Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 2.2e-244 848.6 454 100.0
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 8.9e-209 730.3 568 75.2
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 2.1e-162 576.2 632 58.4
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 2.1e-162 576.2 632 58.4
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 2.1e-162 576.2 632 58.4
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 4.2e-158 562.0 646 56.2
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 7.9e-157 557.8 647 56.4
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 3.0e-156 555.8 644 56.4
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 9.7e-155 550.8 645 55.7
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 6.7e-148 528.1 652 53.7
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 8.8e-148 527.7 632 55.2
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 1.7e-143 513.5 421 70.1
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 4.2e-142 508.8 420 68.8
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 2.1e-141 506.5 640 52.8
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 1.0e-140 504.2 620 52.6
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 6.7e-140 501.5 645 52.2
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 1.1e-137 494.2 421 66.0
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 5.0e-135 485.3 419 65.4
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.6e-133 480.3 647 51.2
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 1.7e-122 443.7 393 65.9
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 8.2e-122 441.4 421 58.7
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 3.5e-120 436.0 417 58.0
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 7.7e-120 434.9 421 58.2
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 1.7e-119 433.7 423 57.9
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.2e-119 433.3 421 58.0
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 2.9e-119 433.0 624 46.0
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 6.5e-119 431.8 425 57.6
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 3.2e-118 429.5 287 80.1
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 3.2e-118 429.5 424 56.8
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 1.8e-116 423.7 421 56.1
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 1.8e-116 423.7 551 49.5
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 2.3e-116 423.3 433 57.0
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 8.8e-116 421.4 631 45.3
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 2.6e-115 419.9 422 55.5
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 3.4e-115 419.5 417 55.9
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 7.5e-115 418.3 629 44.4
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 9.8e-115 417.9 417 55.6
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 1.7e-114 417.2 423 56.0
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 2.8e-114 416.4 393 58.0
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 2.8e-114 416.4 631 45.2
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 3.7e-114 416.0 423 56.3
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 8.3e-114 414.8 422 55.9
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 1.4e-113 414.1 631 47.1
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 2.4e-113 413.3 617 44.4
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 1.6e-112 410.6 415 54.5
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 2.0e-112 410.2 415 53.3
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 2.7e-112 409.8 422 55.5
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.7e-112 409.8 629 43.7
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 3.5e-112 409.5 616 44.3
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 1.0e-111 407.9 423 54.6
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 1.3e-111 407.5 422 55.9
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 1.7e-111 407.1 415 53.7
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 1.7e-111 407.1 423 54.1
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 2.9e-111 406.4 423 54.8
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 3.8e-111 406.0 421 52.7
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 1.1e-110 404.4 415 53.7
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 1.1e-110 404.4 415 53.0
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 3.3e-110 402.9 419 55.6
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 4.2e-110 402.5 640 43.8
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 7.2e-110 401.7 584 49.7
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 7.2e-110 401.7 421 53.0
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 9.5e-110 401.4 420 55.7
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.6e-109 399.4 622 43.9
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 4.7e-109 399.1 415 54.7
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 4.7e-109 399.1 431 52.4
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 1.0e-108 397.9 421 54.4
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.0e-108 397.9 622 43.9
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 3.0e-108 396.4 424 54.5
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 5.2e-108 395.6 451 51.2
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 6.8e-108 395.2 423 54.1
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 5.7e-107 392.1 421 53.2
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 1.3e-106 391.0 626 43.3
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 6.3e-106 388.7 451 49.9
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 1.4e-105 387.5 625 42.9
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 2.4e-105 386.7 615 43.1
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 4.1e-105 386.0 581 43.9
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 5.4e-105 385.6 641 42.1
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 9.2e-105 384.8 618 41.6
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.2e-104 384.4 618 41.6
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.0e-104 383.6 624 42.6
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 1.7e-103 380.6 421 51.1
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 1.7e-103 380.6 431 51.3
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 2.9e-103 379.8 421 50.6
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 2.5e-102 376.7 423 52.0
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 4.3e-102 375.9 628 41.6
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 5.6e-102 375.6 649 40.4
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 9.5e-102 374.8 644 41.8
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 1.2e-101 374.4 415 50.6
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 1.2e-101 374.4 419 50.1
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 1.2e-101 374.4 419 51.3
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 1.2e-101 374.4 423 53.0
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 4.7e-101 372.5 422 51.4
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 6.1e-101 372.1 421 50.8
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 8.0e-101 371.7 422 51.4
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 4.0e-100 369.4 415 49.9
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 1.5e-99 367.5 422 51.4
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.5e-99 367.5 570 43.9
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 3.7e-98 362.8 625 40.6
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 2.4e-97 360.1 627 41.0
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.4e-97 360.1 425 50.6
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 2.7e-96 356.7 426 47.4
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 3.5e-96 356.3 418 50.7
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 4.6e-96 355.9 418 49.8
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 6.0e-96 355.5 421 49.6
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 6.0e-96 355.5 712 37.6
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 1.3e-95 354.4 462 45.9
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 2.3e-95 353.6 418 49.8
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.3e-95 353.6 418 49.8
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 3.0e-95 353.2 418 50.5
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 3.9e-95 352.8 418 49.5
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 5.0e-95 352.4 418 49.5
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 8.0e-93 345.1 317 57.7
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 1.2e-91 341.3 633 39.3
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 2.6e-91 340.1 422 48.1
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 1.7e-90 337.4 429 48.5
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 5.1e-87 325.9 420 46.0
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 1.1e-86 324.7 485 45.8
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 3.4e-83 313.2 318 55.3
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 3.7e-82 309.7 424 47.2
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 8.3e-82 308.5 618 39.2
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 2.8e-77 293.5 525 39.0
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 3.2e-73 280.0 289 52.2
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 2.1e-69 267.3 383 44.4
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 3.6e-69 266.5 419 39.6
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 8.1e-69 265.4 422 39.3
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 2.2e-66 257.3 227 60.4
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 3.8e-66 256.5 269 56.1
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 2.1e-64 250.8 220 60.9
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 2.1e-64 250.8 220 60.9
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 5.3e-60 236.1 414 37.2
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.4e-57 227.3 220 59.5
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 3.1e-52 210.3 284 48.2
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 2.2e-50 204.1 396 36.9
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 5.5e-49 199.5 209 55.5
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 2.1e-48 197.6 193 60.6
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 6.3e-37 159.5 173 54.3
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 4.5e-35 153.3 437 30.0
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 7.2e-33 146.0 113 65.5
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.2e-32 145.2 193 45.1
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 4.3e-30 136.7 153 47.7
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 3.7e-29 133.7 153 47.7
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 7.2e-25 119.4 313 34.8
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.0e-23 115.5 125 48.0
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 3.0e-23 114.0 185 40.0
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 4.8e-21 106.7 485 25.4
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 7.0e-20 102.8 99 58.6
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 4.5e-19 100.1 76 64.5
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 6.5e-18 96.3 309 33.0
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 5.5e-17 93.2 76 61.8
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 5.5e-17 93.2 76 61.8
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 2.7e-16 90.9 56 96.4
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 3.6e-16 90.5 162 38.9
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 1.0e-15 89.0 162 38.3
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 1.4e-15 88.6 77 57.1
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 1.5e-14 85.1 484 25.0
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 4.4e-14 83.6 73 57.5
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 4.8e-13 80.1 59 66.1
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 4.8e-13 80.1 89 50.6
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 4.8e-13 80.1 89 50.6
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 4.8e-13 80.1 89 50.6
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 8.2e-13 79.3 90 48.9
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 1.8e-12 78.2 89 46.1
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 3.1e-12 77.4 72 59.7
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 9.1e-12 75.9 89 48.3
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 9.1e-12 75.9 48 79.2
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 2.0e-11 74.7 56 78.6
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 4.2e-09 67.0 77 45.5
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 1.6e-08 65.1 65 66.2
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 1.4e-07 62.0 43 69.8
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 8.8e-07 59.3 51 54.9
Hma1.2p1_0214F.1_g090690 Hydrangea macrophylla HOM05D003777 ORTHO05D012379 1.2e-06 58.9 48 58.3
MBI11_g46771_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D012379 1.5e-06 58.5 55 56.4
TAR625G1055 Trochodendron aralioides HOM05D003777 ORTHO05D012379 2.6e-06 57.8 47 57.4


User provided reference genes

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