Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p09750 Brassica napus HOM05D003172 ORTHO05D003708 7.1e-130 467.2 231 100.0
BolC2t06884H Brassica oleracea HOM05D003172 ORTHO05D003708 4.6e-52 208.8 219 55.7
A10p21290 Brassica napus HOM05D003172 ORTHO05D003708 5.4e-37 158.7 254 44.5
BcaB08g36694 Brassica carinata HOM05D003172 ORTHO05D003708 7.1e-37 158.3 254 44.1
BraA10t44192Z Brassica rapa HOM05D003172 ORTHO05D003708 7.1e-37 158.3 252 45.6
Sp6g26090 Schrenkiella parvula HOM05D003172 ORTHO05D003708 7.1e-37 158.3 253 45.1
BcaC04g18714 Brassica carinata HOM05D003172 ORTHO05D003708 2.1e-36 156.8 252 44.8
C09p58750 Brassica napus HOM05D003172 ORTHO05D003708 2.1e-36 156.8 252 44.8
BolC9t58717H Brassica oleracea HOM05D003172 ORTHO05D003708 1.3e-35 154.1 252 44.4
Thhalv10012672m.g Eutrema salsugineum HOM05D003172 ORTHO05D003708 1.3e-35 154.1 255 43.5
CARHR194830 Cardamine hirsuta HOM05D003172 ORTHO05D003708 3.9e-35 152.5 262 41.6
AL6G29440 Arabidopsis lyrata HOM05D003172 ORTHO05D003708 1.5e-34 150.6 253 42.7
A03p08720 Brassica napus HOM05D003172 ORTHO05D003708 1.5e-34 150.6 269 40.9
BcaB01g05182 Brassica carinata HOM05D003172 ORTHO05D003708 1.9e-34 150.2 269 40.9
BcaNung04946 Brassica carinata HOM05D003172 ORTHO05D003708 1.9e-34 150.2 274 40.5
C03p10170 Brassica napus HOM05D003172 ORTHO05D003708 1.9e-34 150.2 269 40.9
BolC3t13502H Brassica oleracea HOM05D003172 ORTHO05D003708 1.9e-34 150.2 269 40.9
BraA03t10195Z Brassica rapa HOM05D003172 ORTHO05D003708 1.9e-34 150.2 269 40.9
Carub.0006s1651 Capsella rubella HOM05D003172 ORTHO05D003708 7.3e-34 148.3 252 44.0
AT5G18230 Arabidopsis thaliana HOM05D003172 ORTHO05D003708 9.6e-34 147.9 252 43.7
Cpa.g.sc51.92 Carica papaya HOM05D003172 ORTHO05D003708 1.1e-29 134.4 67 88.1
Manes.08G149400 Manihot esculenta HOM05D003172 ORTHO05D003708 1.1e-29 134.4 66 89.4
Manes.09G142400 Manihot esculenta HOM05D003172 ORTHO05D003708 1.1e-29 134.4 66 89.4
Atru.chr2.1318 Acer truncatum HOM05D003172 ORTHO05D003708 1.4e-29 134.0 68 86.8
Atru.chr2.1341 Acer truncatum HOM05D003172 ORTHO05D003708 1.4e-29 134.0 68 86.8
Phvul.001G109300 Phaseolus vulgaris HOM05D003172 ORTHO05D003708 2.4e-29 133.3 67 88.1
TWI34G0902 Tripterygium wilfordii HOM05D003172 ORTHO05D003708 2.4e-29 133.3 68 86.8
Rhsim04G0086600 Rhododendron simsii HOM05D003172 ORTHO05D003708 3.2e-29 132.9 66 87.9
vmacro09149 Vaccinium macrocarpon HOM05D003172 ORTHO05D003708 3.2e-29 132.9 66 87.9
MD06G1237800 Malus domestica HOM05D003172 ORTHO05D003708 5.4e-29 132.1 66 87.9
MD14G1244600 Malus domestica HOM05D003172 ORTHO05D003708 5.4e-29 132.1 66 87.9
Prupe.5G242100 Prunus persica HOM05D003172 ORTHO05D003708 5.4e-29 132.1 66 87.9
Ciclev10018788m.g Citrus clementina HOM05D003172 ORTHO05D003708 7.1e-29 131.7 68 85.3
Cc06_g21440 Coffea canephora HOM05D003172 ORTHO05D003708 7.1e-29 131.7 66 89.4
TWI32G0690 Tripterygium wilfordii HOM05D003172 ORTHO05D003708 7.1e-29 131.7 68 85.3
CSS0035842 Camellia sinensis var. sinensis HOM05D003172 ORTHO05D003708 9.3e-29 131.3 66 86.4
Glyma.02G071300 Glycine max HOM05D003172 ORTHO05D003708 9.3e-29 131.3 66 86.4
Glyma.16G152500 Glycine max HOM05D003172 ORTHO05D003708 9.3e-29 131.3 66 86.4
Psat3g089480 Pisum sativum HOM05D003172 ORTHO05D003708 9.3e-29 131.3 66 86.4
Potri.013G059800 Populus trichocarpa HOM05D003172 ORTHO05D003708 9.3e-29 131.3 68 85.3
VMungo0464G1094 Vigna mungo HOM05D003172 ORTHO05D003708 9.3e-29 131.3 66 86.4
CANSAT78G1302 Cannabis sativa HOM05D003172 ORTHO05D003708 1.2e-28 131.0 66 86.4
Glyma.19G109500 Glycine max HOM05D003172 ORTHO05D003708 1.2e-28 131.0 66 87.9
Oeu026879.1 Olea europaea HOM05D003172 ORTHO05D003708 1.2e-28 131.0 67 85.1
Potri.019G032800 Populus trichocarpa HOM05D003172 ORTHO05D003708 1.2e-28 131.0 68 85.3
GSVIVG01033382001 Vitis vinifera HOM05D003172 ORTHO05D003708 1.2e-28 131.0 66 86.4
Glyma.16G042600 Glycine max HOM05D003172 ORTHO05D003708 1.6e-28 130.6 66 86.4
Lalb_Chr14g0364401 Lupinus albus HOM05D003172 ORTHO05D003708 1.6e-28 130.6 66 86.4
TPR.G5918 Trifolium pratense HOM05D003172 ORTHO05D003708 1.6e-28 130.6 66 86.4
VMungo1383G1523 Vigna mungo HOM05D003172 ORTHO05D003708 1.6e-28 130.6 66 86.4
Aa31LG11G11360 Aethionema arabicum HOM05D003172 ORTHO05D003708 2.1e-28 130.2 249 40.2
FvH4_5g18220 Fragaria vesca HOM05D003172 ORTHO05D003708 2.1e-28 130.2 67 85.1
FAN04G3171 Fragaria x ananassa HOM05D003172 ORTHO05D003708 2.1e-28 130.2 67 85.1
FAN08G0762 Fragaria x ananassa HOM05D003172 ORTHO05D003708 2.1e-28 130.2 67 85.1
FAN13G1822 Fragaria x ananassa HOM05D003172 ORTHO05D003708 2.1e-28 130.2 67 85.1
FAN18G2753 Fragaria x ananassa HOM05D003172 ORTHO05D003708 2.1e-28 130.2 67 85.1
Hma1.2p1_0183F.1_g080920 Hydrangea macrophylla HOM05D003172 ORTHO05D003708 2.1e-28 130.2 66 86.4
Phvul.004G079000 Phaseolus vulgaris HOM05D003172 ORTHO05D003708 2.1e-28 130.2 66 84.8
RcHm_v2.0_Chr7g0177371 Rosa chinensis HOM05D003172 ORTHO05D003708 2.1e-28 130.2 67 85.1
SGA_v2.0_scaffold94G28397 Striga asiatica HOM05D003172 ORTHO05D003708 2.1e-28 130.2 66 84.8
THA.LOC104802864 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 2.1e-28 130.2 69 82.6
THA.LOC104820736 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 2.1e-28 130.2 69 82.6
Actinidia22095 Actinidia chinensis HOM05D003172 ORTHO05D003708 2.7e-28 129.8 66 84.8
Dinv14587 Davidia involucrata HOM05D003172 ORTHO05D003708 2.7e-28 129.8 66 86.4
Ca_08256_v3 Cicer arietinum L. HOM05D003172 ORTHO05D003708 3.5e-28 129.4 66 84.8
DCAR_013693 Daucus carota HOM05D003172 ORTHO05D003708 3.5e-28 129.4 66 84.8
Lj2C357G5 Lonicera japonica HOM05D003172 ORTHO05D003708 3.5e-28 129.4 66 84.8
Lalb_Chr21g0317121 Lupinus albus HOM05D003172 ORTHO05D003708 3.5e-28 129.4 66 84.8
Medtr7g085350 Medicago truncatula HOM05D003172 ORTHO05D003708 3.5e-28 129.4 66 84.8
COL.COLO4_13621 Corchorus olitorius HOM05D003172 ORTHO05D003708 4.6e-28 129.0 71 83.1
DCAR_016860 Daucus carota HOM05D003172 ORTHO05D003708 4.6e-28 129.0 66 84.8
SGA_v2.0_scaffold274G46522 Striga asiatica HOM05D003172 ORTHO05D003708 4.6e-28 129.0 66 83.3
Duzib106G1828 Durio zibethinus HOM05D003172 ORTHO05D003708 6.0e-28 128.6 70 85.7
Duzib177G0131 Durio zibethinus HOM05D003172 ORTHO05D003708 6.0e-28 128.6 70 85.7
Gohir.A11G257900 Gossypium hirsutum HOM05D003172 ORTHO05D003708 6.0e-28 128.6 70 85.7
Gohir.D11G267900 Gossypium hirsutum HOM05D003172 ORTHO05D003708 6.0e-28 128.6 70 85.7
Gorai.007G287600 Gossypium raimondii HOM05D003172 ORTHO05D003708 6.0e-28 128.6 70 85.7
Oeu035612.2 Olea europaea HOM05D003172 ORTHO05D003708 6.0e-28 128.6 67 82.1
Thecc.05G292800 Theobroma cacao HOM05D003172 ORTHO05D003708 6.0e-28 128.6 70 85.7
Actinidia30565 Actinidia chinensis HOM05D003172 ORTHO05D003708 7.9e-28 128.3 66 83.3
arahy.Tifrunner.gnm1.ann1.1H4ABR Arachis hypogaea HOM05D003172 ORTHO05D003708 7.9e-28 128.3 66 83.3
arahy.Tifrunner.gnm1.ann1.74GIZX Arachis hypogaea HOM05D003172 ORTHO05D003708 7.9e-28 128.3 66 83.3
arahy.Tifrunner.gnm1.ann1.TX5S28 Arachis hypogaea HOM05D003172 ORTHO05D003708 7.9e-28 128.3 66 83.3
arahy.Tifrunner.gnm1.ann1.WX09DK Arachis hypogaea HOM05D003172 ORTHO05D003708 7.9e-28 128.3 66 83.3
EL10Ac3g06798 Beta vulgaris HOM05D003172 ORTHO05D003708 7.9e-28 128.3 66 86.4
CAN.G662.2 Capsicum annuum HOM05D003172 ORTHO05D003708 7.9e-28 128.3 66 84.8
Nitab4.5_0003153g0030 Nicotiana tabacum HOM05D003172 ORTHO05D003708 7.9e-28 128.3 66 84.8
Peaxi162Scf00076g00918 Petunia axillaris HOM05D003172 ORTHO05D003708 7.9e-28 128.3 66 84.8
QL07p020343 Quercus lobata HOM05D003172 ORTHO05D003708 7.9e-28 128.3 66 84.8
Solyc12g019860.2 Solanum lycopersicum HOM05D003172 ORTHO05D003708 7.9e-28 128.3 66 84.8
Sopen12g010260 Solanum pennellii HOM05D003172 ORTHO05D003708 7.9e-28 128.3 66 84.8
TAR623G0379 Trochodendron aralioides HOM05D003172 ORTHO05D003708 7.9e-28 128.3 66 84.8
MSTRG.26061 Avicennia marina HOM05D003172 ORTHO05D003708 1.0e-27 127.9 66 83.3
Cfa016432 Carpinus fangiana HOM05D003172 ORTHO05D003708 1.0e-27 127.9 63 88.9
Haze_19406 Corylus avellana HOM05D003172 ORTHO05D003708 1.0e-27 127.9 63 88.9
Dinv37006 Davidia involucrata HOM05D003172 ORTHO05D003708 1.0e-27 127.9 66 83.3
Lalb_Chr06g0173911 Lupinus albus HOM05D003172 ORTHO05D003708 1.0e-27 127.9 68 83.8
MBI11_g10542_MAGBIO Magnolia biondii HOM05D003172 ORTHO05D003708 1.0e-27 127.9 66 84.8
CiPaw.09G000900 Carya illinoinensis HOM05D003172 ORTHO05D003708 1.3e-27 127.5 63 88.9
Lsat_1_v5_gn_6_36740 Lactuca sativa HOM05D003172 ORTHO05D003708 1.3e-27 127.5 67 85.1
Sabra13G0053000 Salix brachista HOM05D003172 ORTHO05D003708 1.3e-27 127.5 68 80.9
Aqoxy2G00568 Aquilegia oxysepala HOM05D003172 ORTHO05D003708 1.8e-27 127.1 65 84.6
ECA238G3293 Erigeron canadensis HOM05D003172 ORTHO05D003708 1.8e-27 127.1 67 83.6
Migut.N01517 Erythranthe guttata HOM05D003172 ORTHO05D003708 1.8e-27 127.1 66 83.3
Lsat_1_v5_gn_2_57861 Lactuca sativa HOM05D003172 ORTHO05D003708 1.8e-27 127.1 67 83.6
ClCG10G013300 Citrullus lanatus HOM05D003172 ORTHO05D003708 2.3e-27 126.7 66 83.3
MELO3C026894.2 Cucumis melo HOM05D003172 ORTHO05D003708 2.3e-27 126.7 66 83.3
CsaV3_3G043330 Cucumis sativus L. HOM05D003172 ORTHO05D003708 2.3e-27 126.7 66 83.3
Sed0019950 Sechium edule HOM05D003172 ORTHO05D003708 2.3e-27 126.7 68 82.4
TAR369G0048 Trochodendron aralioides HOM05D003172 ORTHO05D003708 2.3e-27 126.7 66 83.3
Gohir.A13G105600 Gossypium hirsutum HOM05D003172 ORTHO05D003708 3.0e-27 126.3 70 84.3
Gohir.D13G109400 Gossypium hirsutum HOM05D003172 ORTHO05D003708 3.0e-27 126.3 70 84.3
Gorai.013G123000 Gossypium raimondii HOM05D003172 ORTHO05D003708 3.0e-27 126.3 70 84.3
HanXRQChr07g0193171 Helianthus annuus HOM05D003172 ORTHO05D003708 3.0e-27 126.3 67 83.6
PSO339G0422 Papaver somniferum HOM05D003172 ORTHO05D003708 3.0e-27 126.3 66 83.3
PSO384G1776 Papaver somniferum HOM05D003172 ORTHO05D003708 3.0e-27 126.3 66 83.3
PGR142G1025 Punica granatum HOM05D003172 ORTHO05D003708 3.9e-27 125.9 66 81.8
Hund24843 Selenicereus undatus HOM05D003172 ORTHO05D003708 3.9e-27 125.9 66 84.8
Migut.K00002 Erythranthe guttata HOM05D003172 ORTHO05D003708 5.1e-27 125.6 66 81.8
HanXRQChr09g0266331 Helianthus annuus HOM05D003172 ORTHO05D003708 5.1e-27 125.6 67 82.1
Sabra19G0041100 Salix brachista HOM05D003172 ORTHO05D003708 5.1e-27 125.6 67 83.6
HanXRQChr09g0252941 Helianthus annuus HOM05D003172 ORTHO05D003708 8.7e-27 124.8 67 80.6
Lj1g0020713 Lotus japonicus HOM05D003172 ORTHO05D003708 8.7e-27 124.8 66 80.3
Lj5g0018859 Lotus japonicus HOM05D003172 ORTHO05D003708 8.7e-27 124.8 66 80.3
SHI23389 Sapria himalayana HOM05D003172 ORTHO05D003708 8.7e-27 124.8 68 80.9
Sed0012949 Sechium edule HOM05D003172 ORTHO05D003708 8.7e-27 124.8 67 80.6
Sc19g0006520 Simmondsia chinensis HOM05D003172 ORTHO05D003708 1.1e-26 124.4 66 83.3
SEGI_16964 Sequoiadendron giganteum HOM05D003172 ORTHO05D003708 1.5e-26 124.0 62 87.1
unitig_26.g9324 Utricularia gibba HOM05D003172 ORTHO05D003708 1.9e-26 123.6 62 87.1
HPP92_013954 Vanilla planifolia HOM05D003172 ORTHO05D003708 2.5e-26 123.2 68 77.9
Eucgr.A02083 Eucalyptus grandis HOM05D003172 ORTHO05D003708 3.3e-26 122.9 63 85.7
Nn7g35818 Nelumbo nucifera HOM05D003172 ORTHO05D003708 4.3e-26 122.5 66 81.8
CDE07G1719 Ceratophyllum demersum HOM05D003172 ORTHO05D003708 7.4e-26 121.7 65 80.0
AUR62032669 Chenopodium quinoa HOM05D003172 ORTHO05D003708 7.4e-26 121.7 66 81.8
AUR62035298 Chenopodium quinoa HOM05D003172 ORTHO05D003708 7.4e-26 121.7 66 81.8
ECA233G5856 Erigeron canadensis HOM05D003172 ORTHO05D003708 7.4e-26 121.7 63 84.1
THA.LOC104805751 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 7.4e-26 121.7 74 74.3
THA.LOC104805989 Tarenaya hassleriana HOM05D003172 ORTHO05D003708 7.4e-26 121.7 74 74.3
CDE04G2412 Ceratophyllum demersum HOM05D003172 ORTHO05D003708 1.3e-25 120.9 77 70.1
Nn2g15889 Nelumbo nucifera HOM05D003172 ORTHO05D003708 3.7e-25 119.4 66 78.8
Ah.04g153270 Amaranthus hybridus HOM05D003172 ORTHO05D003708 4.8e-25 119.0 66 80.3
unitig_736.g22311 Utricularia gibba HOM05D003172 ORTHO05D003708 1.4e-24 117.5 66 77.3
Zm00001eb218410 Zea mays HOM05D003172 ORTHO05D003708 1.4e-24 117.5 67 74.6
CARHR217110 Cardamine hirsuta HOM05D003172 ORTHO05D003708 1.8e-24 117.1 84 65.5
Zm00001eb052870 Zea mays HOM05D003172 ORTHO05D003708 2.4e-24 116.7 67 73.1
Rhsim03G0000400 Rhododendron simsii HOM05D003172 ORTHO05D003708 3.1e-24 116.3 63 79.4
Os03g0652100 Oryza sativa ssp. japonica HOM05D003172 ORTHO05D003708 4.0e-24 115.9 66 74.2
A02p04790 Brassica napus HOM05D003172 ORTHO05D003708 6.9e-24 115.2 70 82.9
Mapoly0027s0010 Marchantia polymorpha HOM05D003172 ORTHO05D003708 6.9e-24 115.2 62 80.6
ATR0697G199 Amborella trichopoda HOM05D003172 ORTHO05D003708 9.0e-24 114.8 62 79.0
AagrBONN_evm.TU.Sc2ySwM_362.2336 Anthoceros agrestis HOM05D003172 ORTHO05D003708 9.0e-24 114.8 65 76.9
vmacro12578 Vaccinium macrocarpon HOM05D003172 ORTHO05D003708 9.0e-24 114.8 61 82.0
Pp3c8_22460 Physcomitrium patens HOM05D003172 ORTHO05D003708 2.6e-23 113.2 61 80.3
Pp3c24_19770 Physcomitrium patens HOM05D003172 ORTHO05D003708 3.4e-23 112.8 61 78.7
Mapoly0036s0115 Marchantia polymorpha HOM05D003172 ORTHO05D003708 4.5e-23 112.5 66 72.7
CBR_g17178 Chara braunii HOM05D003172 ORTHO05D003708 5.8e-23 112.1 63 77.8
ATR0559G169 Amborella trichopoda HOM05D003172 ORTHO05D003708 9.9e-23 111.3 62 77.4
SMO115G0330 Selaginella moellendorffii HOM05D003172 ORTHO05D003708 1.3e-22 110.9 66 69.7
Oeu062136.1 Olea europaea HOM05D003172 ORTHO05D003708 2.2e-22 110.2 58 81.0
HPP92_012145 Vanilla planifolia HOM05D003172 ORTHO05D003708 5.5e-21 105.5 68 67.6
MCO08G071 Micromonas commoda HOM05D003172 ORTHO05D003708 8.7e-19 98.2 61 65.6
Cre04.g227350 Chlamydomonas reinhardtii HOM05D003172 ORTHO05D003708 4.3e-18 95.9 61 68.9
Cfa022625 Carpinus fangiana HOM05D003172 ORTHO05D003708 7.4e-18 95.1 79 49.4
CBR_g48492 Chara braunii HOM05D003172 ORTHO05D003708 7.9e-12 75.1 51 58.8
BcaC03g13584 Brassica carinata HOM05D003172 ORTHO05D003708 1.1e-08 64.7 54 59.3
SEGI_19635 Sequoiadendron giganteum HOM05D002621 ORTHO05D002929 1.3e-06 57.8 93 36.6
SEGI_33920 Sequoiadendron giganteum HOM05D002621 ORTHO05D002929 1.3e-06 57.8 93 36.6
TWI75G1204 Tripterygium wilfordii HOM05D002621 ORTHO05D002929 1.3e-06 57.8 63 41.3
BcaB05g23297 Brassica carinata HOM05D003172 ORTHO05D003708 6.5e-06 55.5 53 60.4
Thhalv10007092m.g Eutrema salsugineum HOM05D002621 ORTHO05D002929 8.5e-06 55.1 60 41.7
RcHm_v2.0_Chr5g0052311 Rosa chinensis HOM05D003172 ORTHO05D003708 8.5e-06 55.1 31 77.4


User provided reference genes

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