Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g18447 Brassica carinata HOM05D004464 ORTHO05D005135 6.1e-100 367.5 183 100.0
C02p07950 Brassica napus HOM05D004464 ORTHO05D005135 6.1e-100 367.5 183 100.0
BolC2t06718H Brassica oleracea HOM05D004464 ORTHO05D005135 6.1e-100 367.5 183 100.0
A02p03200 Brassica napus HOM05D004464 ORTHO05D005135 3.0e-99 365.2 183 99.5
BraA02t05291Z Brassica rapa HOM05D004464 ORTHO05D005135 3.0e-99 365.2 183 99.5
BcaNung02202 Brassica carinata HOM05D004464 ORTHO05D005135 5.7e-98 360.9 183 98.4
C03p08530 Brassica napus HOM05D004464 ORTHO05D005135 1.0e-94 350.1 183 94.5
Sp6g28370 Schrenkiella parvula HOM05D004464 ORTHO05D005135 2.2e-94 349.0 183 94.5
BcaB01g05028 Brassica carinata HOM05D004464 ORTHO05D005135 2.9e-94 348.6 183 93.4
BraA03t10058Z Brassica rapa HOM05D004464 ORTHO05D005135 1.1e-93 346.7 183 93.4
A03p07340 Brassica napus HOM05D004464 ORTHO05D005135 2.5e-93 345.5 183 93.4
Carub.0006s1390 Capsella rubella HOM05D004464 ORTHO05D005135 1.1e-88 330.1 183 89.1
CARHR197580 Cardamine hirsuta HOM05D004464 ORTHO05D005135 1.4e-88 329.7 183 89.1
Carub.0004s0609 Capsella rubella HOM05D004464 ORTHO05D005135 1.8e-88 329.3 183 88.5
AL6G26590 Arabidopsis lyrata HOM05D004464 ORTHO05D005135 3.1e-88 328.6 183 89.1
AT5G15750 Arabidopsis thaliana HOM05D004464 ORTHO05D005135 7.0e-88 327.4 183 88.0
Aa31LG11G13830 Aethionema arabicum HOM05D004464 ORTHO05D005135 9.1e-88 327.0 183 87.4
Aa31LG2G910 Aethionema arabicum HOM05D004464 ORTHO05D005135 1.6e-87 326.2 183 87.4
Gohir.A05G003100 Gossypium hirsutum HOM05D004464 ORTHO05D005135 2.3e-86 322.4 181 86.7
THA.LOC104820981 Tarenaya hassleriana HOM05D004464 ORTHO05D005135 5.0e-86 321.2 183 86.9
Duzib150G0689 Durio zibethinus HOM05D004464 ORTHO05D005135 1.5e-85 319.7 181 85.6
Gohir.D05G003500 Gossypium hirsutum HOM05D004464 ORTHO05D005135 1.5e-85 319.7 181 85.6
Gorai.009G003100 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.5e-85 319.7 181 85.6
Phvul.007G072900 Phaseolus vulgaris HOM05D004464 ORTHO05D005135 7.2e-85 317.4 181 84.5
PGR042G1328 Punica granatum HOM05D004464 ORTHO05D005135 2.1e-84 315.8 181 85.1
Thecc.01G298100 Theobroma cacao HOM05D004464 ORTHO05D005135 2.1e-84 315.8 181 84.5
GSVIVG01036537001 Vitis vinifera HOM05D004464 ORTHO05D005135 2.1e-84 315.8 181 84.5
Glyma.10G232700 Glycine max HOM05D004464 ORTHO05D005135 2.8e-84 315.5 181 84.0
Glyma.20G161600 Glycine max HOM05D004464 ORTHO05D005135 2.8e-84 315.5 181 84.0
CDE10G0456 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 4.7e-84 314.7 181 83.4
Atru.chr12.814 Acer truncatum HOM05D004464 ORTHO05D005135 2.3e-83 312.4 181 84.0
TAR371G0146 Trochodendron aralioides HOM05D004464 ORTHO05D005135 3.0e-83 312.0 181 84.0
Eucgr.J01412 Eucalyptus grandis HOM05D004464 ORTHO05D005135 5.2e-83 311.2 181 82.9
Dinv33871 Davidia involucrata HOM05D004464 ORTHO05D005135 6.8e-83 310.8 181 83.4
Cc07_g04530 Coffea canephora HOM05D004464 ORTHO05D005135 8.9e-83 310.5 181 82.9
Ciclev10012892m.g Citrus clementina HOM05D004464 ORTHO05D005135 1.2e-82 310.1 181 82.9
VMungo0720G0545 Vigna mungo HOM05D004464 ORTHO05D005135 1.2e-82 310.1 181 84.0
Actinidia26272 Actinidia chinensis HOM05D004464 ORTHO05D005135 1.5e-82 309.7 181 82.9
MSTRG.15432 Avicennia marina HOM05D004464 ORTHO05D005135 1.5e-82 309.7 181 82.3
CDE10G0562 Ceratophyllum demersum HOM05D004464 ORTHO05D005135 1.5e-82 309.7 181 84.0
HanXRQChr15g0490131 Helianthus annuus HOM05D004464 ORTHO05D005135 1.5e-82 309.7 183 82.0
SGA_v2.0_scaffold148G36455 Striga asiatica HOM05D004464 ORTHO05D005135 2.6e-82 308.9 181 82.3
Dinv34904 Davidia involucrata HOM05D004464 ORTHO05D005135 3.4e-82 308.5 181 83.4
Prupe.3G248300 Prunus persica HOM05D004464 ORTHO05D005135 5.7e-82 307.8 181 81.2
SalBow1G0807 Salvia bowleyana HOM05D004464 ORTHO05D005135 5.7e-82 307.8 181 82.9
Nn4g23543 Nelumbo nucifera HOM05D004464 ORTHO05D005135 9.8e-82 307.0 181 82.3
Manes.01G100100 Manihot esculenta HOM05D004464 ORTHO05D005135 1.3e-81 306.6 181 81.8
Peaxi162Scf01039g00131 Petunia axillaris HOM05D004464 ORTHO05D005135 1.3e-81 306.6 181 80.7
Actinidia17608 Actinidia chinensis HOM05D004464 ORTHO05D005135 2.2e-81 305.8 181 81.8
Migut.K00882 Erythranthe guttata HOM05D004464 ORTHO05D005135 2.8e-81 305.4 181 80.1
Hma1.2p1_1837F.1_g304810 Hydrangea macrophylla HOM05D004464 ORTHO05D005135 2.8e-81 305.4 181 82.3
CANSAT11G0238 Cannabis sativa HOM05D004464 ORTHO05D005135 4.9e-81 304.7 181 81.8
PGSC0003DMG400001469 Solanum tuberosum HOM05D004464 ORTHO05D005135 1.1e-80 303.5 181 80.1
TPR.G29907 Trifolium pratense HOM05D004464 ORTHO05D005135 1.1e-80 303.5 181 80.7
ClCG07G016070 Citrullus lanatus HOM05D004464 ORTHO05D005135 1.4e-80 303.1 181 81.8
Sopen02g034060 Solanum pennellii HOM05D004464 ORTHO05D005135 1.4e-80 303.1 181 80.1
Solyc02g089280.3 Solanum lycopersicum HOM05D004464 ORTHO05D005135 2.4e-80 302.4 181 80.1
CANSAT64G2552 Cannabis sativa HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 80.1
MBI15_g04989_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 80.7
MBI15_g11301_MAGBIO Magnolia biondii HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 80.7
MD09G1075700 Malus domestica HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 80.1
Nitab4.5_0001339g0030 Nicotiana tabacum HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 79.6
TWI36G0525 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 78.5
TWI36G0787 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 3.1e-80 302.0 181 78.5
Ah.16g101000 Amaranthus hybridus HOM05D004464 ORTHO05D005135 5.4e-80 301.2 181 79.6
COL.COLO4_21291 Corchorus olitorius HOM05D004464 ORTHO05D005135 5.4e-80 301.2 181 80.1
Lj3g0020854 Lotus japonicus HOM05D004464 ORTHO05D005135 5.4e-80 301.2 181 79.6
Lj4g0017621 Lotus japonicus HOM05D004464 ORTHO05D005135 5.4e-80 301.2 181 79.6
MD17G1066400 Malus domestica HOM05D004464 ORTHO05D005135 5.4e-80 301.2 181 80.1
Sabra17G0087000 Salix brachista HOM05D004464 ORTHO05D005135 5.4e-80 301.2 181 79.6
SGA_v2.0_scaffold163G37992 Striga asiatica HOM05D004464 ORTHO05D005135 5.4e-80 301.2 181 80.1
Psat7g017000 Pisum sativum HOM05D004464 ORTHO05D005135 7.0e-80 300.8 181 80.7
TWI75G1858 Tripterygium wilfordii HOM05D004464 ORTHO05D005135 7.0e-80 300.8 181 78.5
Medtr8g102530 Medicago truncatula HOM05D004464 ORTHO05D005135 9.2e-80 300.4 181 78.5
Hund16239 Selenicereus undatus HOM05D004464 ORTHO05D005135 9.2e-80 300.4 181 78.5
Potri.017G101200 Populus trichocarpa HOM05D004464 ORTHO05D005135 1.2e-79 300.1 181 79.6
TPR.G23462 Trifolium pratense HOM05D004464 ORTHO05D005135 1.6e-79 299.7 181 80.1
CsaV3_4G010040 Cucumis sativus L. HOM05D004464 ORTHO05D005135 2.7e-79 298.9 181 80.1
unitig_0.g1789 Utricularia gibba HOM05D004464 ORTHO05D005135 1.3e-78 296.6 181 79.0
arahy.Tifrunner.gnm1.ann1.6V5APJ Arachis hypogaea HOM05D004464 ORTHO05D005135 2.3e-78 295.8 181 77.9
arahy.Tifrunner.gnm1.ann1.AQQ1ZC Arachis hypogaea HOM05D004464 ORTHO05D005135 2.3e-78 295.8 181 77.9
ATR0743G033 Amborella trichopoda HOM05D004464 ORTHO05D005135 2.9e-78 295.4 181 77.9
Potri.004G113600 Populus trichocarpa HOM05D004464 ORTHO05D005135 5.0e-78 294.7 181 77.3
Sabra10G0012000 Salix brachista HOM05D004464 ORTHO05D005135 6.6e-78 294.3 188 76.6
FvH4_6g46310 Fragaria vesca HOM05D004464 ORTHO05D005135 1.1e-77 293.5 181 77.3
FAN02G0274 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.1e-77 293.5 181 77.3
FAN14G2017 Fragaria x ananassa HOM05D004464 ORTHO05D005135 1.1e-77 293.5 181 77.3
EL10Ac2g04433 Beta vulgaris HOM05D004464 ORTHO05D005135 1.5e-77 293.1 181 76.8
Sed0009719 Sechium edule HOM05D004464 ORTHO05D005135 1.5e-77 293.1 181 78.5
Lalb_Chr16g0389591 Lupinus albus HOM05D004464 ORTHO05D005135 2.5e-77 292.4 181 77.9
FAN05G3637 Fragaria x ananassa HOM05D004464 ORTHO05D005135 3.3e-77 292.0 181 76.8
Sc07g0002150 Simmondsia chinensis HOM05D004464 ORTHO05D005135 3.3e-77 292.0 181 77.9
CSS0016516 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 4.3e-77 291.6 181 77.3
FAN09G0031 Fragaria x ananassa HOM05D004464 ORTHO05D005135 4.3e-77 291.6 181 76.8
CSS0037173 Camellia sinensis var. sinensis HOM05D004464 ORTHO05D005135 5.6e-77 291.2 181 76.8
RcHm_v2.0_Chr2g0164761 Rosa chinensis HOM05D004464 ORTHO05D005135 5.6e-77 291.2 181 77.3
DCAR_016093 Daucus carota HOM05D004464 ORTHO05D005135 9.5e-77 290.4 181 75.7
Ah.10g038200 Amaranthus hybridus HOM05D004464 ORTHO05D005135 1.6e-76 289.7 181 76.8
AUR62009474 Chenopodium quinoa HOM05D004464 ORTHO05D005135 2.1e-76 289.3 181 76.8
CAN.G497.54 Capsicum annuum HOM05D004464 ORTHO05D005135 1.0e-75 287.0 181 76.2
AUR62023152 Chenopodium quinoa HOM05D004464 ORTHO05D005135 1.0e-75 287.0 181 76.2
Aqoxy3G02935 Aquilegia oxysepala HOM05D004464 ORTHO05D005135 2.0e-74 282.7 181 75.7
Oeu033412.2 Olea europaea HOM05D004464 ORTHO05D005135 2.6e-74 282.3 226 65.5
PSO198G0095 Papaver somniferum HOM05D004464 ORTHO05D005135 7.5e-74 280.8 181 74.0
CiPaw.15G080600 Carya illinoinensis HOM05D004464 ORTHO05D005135 9.8e-74 280.4 184 73.4
PSO782G4050 Papaver somniferum HOM05D004464 ORTHO05D005135 1.3e-73 280.0 181 74.0
QL09p044371 Quercus lobata HOM05D004464 ORTHO05D005135 1.3e-73 280.0 184 73.4
Cfa007699 Carpinus fangiana HOM05D004464 ORTHO05D005135 1.1e-72 276.9 186 73.1
PSO017G3712 Papaver somniferum HOM05D004464 ORTHO05D005135 1.1e-72 276.9 181 73.5
CiPaw.06G059900 Carya illinoinensis HOM05D004464 ORTHO05D005135 5.4e-72 274.6 184 71.2
QL02p065152 Quercus lobata HOM05D004464 ORTHO05D005135 5.4e-72 274.6 184 72.3
Mapoly0007s0196 Marchantia polymorpha HOM05D004464 ORTHO05D005135 1.6e-71 273.1 181 70.7
vmacro18124 Vaccinium macrocarpon HOM05D004464 ORTHO05D005135 6.0e-71 271.2 180 74.4
ECA285G0012 Erigeron canadensis HOM05D004464 ORTHO05D005135 1.0e-70 270.4 187 72.2
Thhalv10014794m.g Eutrema salsugineum HOM05D004464 ORTHO05D005135 5.0e-70 268.1 140 93.6
Ca_17363_v3 Cicer arietinum L. HOM05D002451 ORTHO05D007901 8.6e-70 267.3 155 82.6
SMO089G0012 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 8.6e-70 267.3 183 69.9
MCO12G368 Micromonas commoda HOM05D004464 ORTHO05D005135 1.9e-69 266.2 181 70.2
SHI12226 Sapria himalayana HOM05D004464 ORTHO05D005135 4.7e-68 261.5 182 68.7
Pp3c13_7750 Physcomitrium patens HOM05D004464 ORTHO05D005135 1.4e-67 260.0 181 68.0
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 1.4e-67 260.0 155 80.6
DCAR_010215 Daucus carota HOM05D004464 ORTHO05D005135 2.3e-67 259.2 217 61.3
Duzib170G0747 Durio zibethinus HOM05D004464 ORTHO05D005135 5.2e-67 258.1 181 72.4
Nitab4.5_0009887g0020 Nicotiana tabacum HOM05D004464 ORTHO05D005135 8.9e-67 257.3 148 81.8
Cre03.g170750 Chlamydomonas reinhardtii HOM05D004464 ORTHO05D005135 1.1e-64 250.4 181 65.7
Glyma.16G058000 Glycine max HOM05D004464 ORTHO05D005135 1.4e-64 250.0 148 81.8
Atru.chr5.3325 Acer truncatum HOM05D004464 ORTHO05D005135 2.4e-64 249.2 181 69.1
Zm00001eb280020 Zea mays HOM05D004464 ORTHO05D005135 7.3e-61 237.7 181 65.7
Haze_14377 Corylus avellana HOM05D004464 ORTHO05D005135 4.7e-60 235.0 190 65.8
BcaNung00660 Brassica carinata HOM05D004464 ORTHO05D005135 8.1e-60 234.2 158 74.7
Lsat_1_v5_gn_3_96881 Lactuca sativa HOM05D004464 ORTHO05D005135 1.1e-59 233.8 181 66.9
PSO478G4867 Papaver somniferum HOM05D004464 ORTHO05D005135 9.2e-56 220.7 181 61.9
SEGI_12415 Sequoiadendron giganteum HOM05D004464 ORTHO05D005135 3.9e-54 215.3 136 73.5
HPP92_025702 Vanilla planifolia HOM05D004464 ORTHO05D005135 8.6e-54 214.2 155 69.0
BcaNung00661 Brassica carinata HOM05D004464 ORTHO05D005135 1.8e-51 206.5 158 69.0
SMO302G0020 Selaginella moellendorffii HOM05D004464 ORTHO05D005135 2.4e-51 206.1 182 59.9
Gorai.007G357000 Gossypium raimondii HOM05D004464 ORTHO05D005135 3.1e-51 205.7 176 64.2
Nn3g17540 Nelumbo nucifera HOM05D004464 ORTHO05D005135 3.4e-50 202.2 181 60.2
BolC3t13358H Brassica oleracea HOM05D004464 ORTHO05D005135 8.4e-49 197.6 106 90.6
AagrBONN_evm.TU.Sc2ySwM_362.1773 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.4e-48 196.8 148 63.5
Cpa.g.sc14.239 Carica papaya HOM05D004464 ORTHO05D005135 2.3e-46 189.5 100 92.0
MELO3C000036.2 Cucumis melo HOM05D004464 ORTHO05D005135 3.0e-46 189.1 148 64.2
Cfa025099 Carpinus fangiana HOM05D002539 ORTHO05D005135 1.1e-43 180.6 186 47.3
Rhsim08G0077600 Rhododendron simsii HOM05D004464 ORTHO05D005135 1.5e-42 176.8 100 84.0
Gorai.007G356600 Gossypium raimondii HOM05D004464 ORTHO05D005135 1.7e-41 173.3 98 84.7
Gorai.007G357200 Gossypium raimondii HOM05D004464 ORTHO05D005135 2.9e-41 172.6 97 83.5
BolC1t00394H Brassica oleracea HOM05D004464 ORTHO05D005135 1.4e-40 170.2 99 82.8
Lju361C7T5 Lonicera japonica HOM05D004464 ORTHO05D005135 5.4e-40 168.3 98 79.6
CBR_g26031 Chara braunii HOM05D004464 ORTHO05D005135 6.0e-39 164.9 132 60.6
ECA246G0747 Erigeron canadensis HOM05D004464 ORTHO05D005135 2.4e-35 152.9 112 68.8
AagrBONN_evm.TU.Sc2ySwM_344.90 Anthoceros agrestis HOM05D004464 ORTHO05D005135 1.5e-34 150.2 134 58.2
Lju361A7T16 Lonicera japonica HOM05D004464 ORTHO05D005135 6.7e-30 134.8 81 79.0
Oeu003765.1 Olea europaea HOM05D007961 ORTHO05D005135 1.9e-29 133.3 76 82.9
AagrBONN_evm.TU.Sc2ySwM_368.3154 Anthoceros agrestis HOM05D004464 ORTHO05D005135 2.0e-26 123.2 99 60.6
MELO3C001556.2 Cucumis melo HOM05D004464 ORTHO05D005135 4.9e-25 118.6 81 70.4
SHI12394 Sapria himalayana HOM05D004464 ORTHO05D005135 1.6e-23 113.6 106 60.4
C09p61360 Brassica napus HOM05D004464 ORTHO05D005135 7.4e-21 104.8 189 42.3
SHI40216 Sapria himalayana HOM05D004464 ORTHO05D005135 1.8e-19 100.1 68 63.2
Thecc.01G298200 Theobroma cacao HOM05D004464 ORTHO05D005135 2.9e-17 92.8 106 51.9
MELO3C000032.2 Cucumis melo HOM05D004464 ORTHO05D005135 1.1e-16 90.9 52 88.5
BcaC04g18941 Brassica carinata HOM05D004464 ORTHO05D005135 1.1e-11 74.3 183 35.5
BolC9t58977H Brassica oleracea HOM05D004464 ORTHO05D005135 1.1e-08 64.3 81 49.4
Os04g0662100 Oryza sativa ssp. japonica HOM05D004464 ORTHO05D005135 3.0e-06 56.2 37 62.2
MCO09G009 Micromonas commoda HOM05D001645 ORTHO05D001749 8.8e-06 54.7 140 25.7


User provided reference genes

Program Settings