Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 2029.6 1043 100.0
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 2027.7 1043 99.9
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1999.2 1043 98.4
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1974.5 1045 96.9
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1964.9 1047 96.5
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1888.6 1044 92.6
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1876.7 1044 92.4
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1870.5 1052 91.3
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1870.5 1052 91.3
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1861.3 1049 91.8
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1858.6 1047 91.4
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1847.8 1047 90.6
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1843.2 1047 90.4
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1835.8 1047 89.9
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1824.3 1046 90.0
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1811.6 1047 89.1
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1715.3 1048 83.7
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1571.2 1058 76.2
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1564.7 1054 76.1
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1562.4 1033 76.6
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1561.2 1057 75.7
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1559.3 1051 75.6
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1557.7 1060 74.6
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1556.6 1058 75.4
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1555.4 1056 75.7
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1555.4 1053 75.8
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 1555.0 1049 75.7
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1553.1 1058 76.3
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1552.7 1056 74.5
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1552.3 1056 75.6
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1549.6 1051 74.5
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1548.9 1047 75.9
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1548.1 1055 75.0
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1548.1 1047 75.1
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1547.3 1057 74.5
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1543.9 1047 75.5
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1541.9 1070 74.2
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1540.4 1058 75.2
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1538.9 1059 75.1
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1538.5 1058 75.3
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1535.0 1059 74.2
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1534.2 1054 75.1
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1534.2 1058 75.0
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1533.1 1059 74.4
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1531.5 1059 74.3
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1530.4 1030 75.7
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1530.0 1054 74.6
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1530.0 1048 75.2
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1529.6 1054 74.8
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1529.2 1048 75.2
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1528.8 1059 74.5
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1527.7 1052 74.4
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1525.8 1053 74.6
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1522.3 1053 74.9
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1522.3 1052 74.0
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1521.5 1048 73.6
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1520.0 1057 74.2
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1519.6 1069 74.1
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1519.6 1058 73.9
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1518.1 1054 74.7
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1515.7 1052 74.1
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1515.7 1047 73.7
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1515.7 1093 72.2
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1515.4 1050 73.9
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1515.4 1066 73.9
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1514.2 1031 74.8
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1510.4 1058 73.3
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1509.6 1055 72.7
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1508.8 1057 73.5
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1506.9 1058 74.3
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1503.0 1058 72.7
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1501.1 1081 72.6
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1498.0 1046 73.1
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1498.0 1061 72.6
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1496.5 1053 72.6
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1496.1 1050 73.2
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1490.3 1056 71.7
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1484.2 1059 72.7
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1481.5 1054 72.8
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1478.4 1046 72.8
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1475.7 1050 72.9
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1474.5 1149 67.4
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1472.6 1040 71.8
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1469.9 1058 72.2
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1468.4 1045 71.8
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1465.7 1094 70.1
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1465.3 1049 71.9
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1461.8 1058 72.3
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1460.7 1058 72.2
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1453.7 1063 70.6
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1452.6 1041 71.6
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1451.0 1037 71.4
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1449.1 1097 69.7
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1445.6 1031 71.3
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1442.9 1100 69.7
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1426.0 1050 70.2
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1419.4 1029 70.4
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1417.5 1052 69.7
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1410.2 1029 69.6
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1405.2 1049 70.2
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1365.9 1031 67.8
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1347.0 1052 67.3
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1330.5 1048 68.2
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1309.7 922 71.6
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1288.5 969 68.3
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1277.7 1032 65.8
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1270.0 1057 64.4
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1266.1 969 66.5
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1243.4 1042 62.3
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1241.9 1015 64.4
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1237.2 1038 63.0
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1171.4 814 72.9
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1088.9 1029 56.1
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 0.0e+00 1088.6 1029 56.9
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 8.9e-305 1050.4 1025 54.1
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 9.2e-302 1040.4 752 72.1
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 3.8e-295 1018.5 1042 53.6
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 1.4e-286 989.9 705 69.9
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 7.1e-286 987.6 706 69.8
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 5.3e-281 971.5 622 80.2
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.7e-276 954.5 1017 52.3
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.5e-259 900.2 969 53.3
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 2.5e-259 899.4 1039 49.8
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 8.2e-258 894.4 612 72.7
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 7.7e-256 887.9 1045 49.6
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 1.4e-249 867.1 1044 48.6
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 3.5e-240 835.9 549 76.5
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 8.5e-231 804.7 480 83.8
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 5.5e-214 748.8 448 83.9
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 1.9e-206 723.8 384 97.1
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 5.6e-198 695.7 1034 42.7
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 7.8e-192 675.2 505 74.1
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 1.8e-188 664.1 437 74.6
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 3.9e-183 646.4 1021 41.0
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 1.5e-179 634.4 399 76.7
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.8e-173 613.6 481 65.3
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 4.6e-168 596.3 520 57.9
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 4.8e-165 586.3 463 66.7
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 8.1e-165 585.5 1093 36.2
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.7e-142 509.6 373 68.4
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.3e-141 506.1 367 68.7
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.3e-141 506.1 367 68.7
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 6.1e-136 489.6 322 74.5
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 1.0e-135 488.8 426 58.7
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.1e-135 486.5 372 67.5
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 2.4e-124 451.1 571 47.1
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 4.2e-121 440.3 588 44.4
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 2.0e-118 431.4 1049 31.5
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 3.5e-115 420.6 657 40.2
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 3.7e-101 374.0 296 64.2
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 2.9e-98 364.4 291 65.3
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 2.7e-91 341.3 195 85.1
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.6e-88 330.9 505 42.4
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 1.8e-79 302.0 296 57.1
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 2.6e-78 298.1 515 37.7
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 2.9e-69 268.1 419 41.5
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 2.4e-68 265.0 410 42.0
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 1.2e-62 246.1 135 88.9
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 2.6e-62 245.0 184 68.5
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.2e-60 238.0 245 55.9
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.5e-57 228.4 296 45.6
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.4e-54 218.0 238 54.6
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 2.7e-51 208.4 162 69.1
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 5.8e-46 190.7 126 74.6
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 2.9e-45 188.3 143 67.8
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 2.4e-44 185.3 192 49.0
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 8.1e-40 170.2 143 65.7
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 5.5e-36 157.5 93 82.8
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 3.5e-35 154.8 176 52.3
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.3e-33 148.3 128 61.7
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 1.5e-30 139.4 253 38.3
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 1.4e-28 132.9 221 39.4
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 2.5e-28 132.1 95 70.5
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 1.4e-18 99.8 276 30.1
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 1.0e-13 83.6 55 76.4
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 9.4e-12 77.0 49 73.5
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 1.6e-11 76.3 71 50.7
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 1.8e-10 72.8 76 51.3
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 3.3e-09 68.6 69 49.3


User provided reference genes

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