Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 0.0e+00 1119.8 616 100.0
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 6.6e-308 1060.1 616 93.7
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 1.1e-297 1026.2 624 90.1
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 8.5e-279 963.4 618 86.9
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 2.0e-251 872.5 624 81.2
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 2.3e-228 795.8 616 74.2
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 5.2e-228 794.7 626 74.1
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 5.8e-227 791.2 621 74.1
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.0e-223 780.4 554 77.1
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 3.3e-222 775.4 565 73.1
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 3.2e-185 652.5 565 66.2
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 6.3e-173 611.7 459 75.4
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 6.1e-152 542.0 542 54.4
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 7.5e-142 508.4 366 72.1
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 1.6e-128 464.2 571 48.3
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 3.4e-126 456.4 564 51.6
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 9.8e-126 454.9 552 50.9
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 9.2e-124 448.4 546 51.6
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 2.3e-122 443.7 553 48.1
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 2.9e-122 443.4 521 46.6
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.5e-121 441.0 585 48.0
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 3.3e-121 439.9 545 45.5
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 3.6e-120 436.4 564 47.5
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 8.0e-120 435.3 545 51.9
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 6.8e-119 432.2 551 46.6
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 6.8e-119 432.2 566 47.3
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 6.8e-119 432.2 528 47.3
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 3.4e-118 429.9 548 49.8
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 5.7e-118 429.1 566 44.3
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 9.8e-118 428.3 548 44.9
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 1.3e-117 427.9 551 44.5
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.7e-117 427.6 548 44.9
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 1.7e-117 427.6 539 43.8
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 2.2e-117 427.2 561 47.8
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.2e-117 427.2 548 44.7
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 2.2e-117 427.2 548 49.6
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 4.9e-117 426.0 571 43.1
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 8.3e-117 425.2 567 43.6
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 1.8e-116 424.1 548 44.7
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 5.4e-116 422.5 550 45.5
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 1.2e-115 421.4 566 48.8
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 1.2e-115 421.4 574 45.5
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 3.0e-114 416.8 541 42.9
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 1.9e-113 414.1 554 45.1
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 1.9e-113 414.1 557 42.4
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 3.3e-113 413.3 516 45.3
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 6.2e-112 409.1 554 44.6
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 8.0e-112 408.7 533 48.6
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 2.3e-111 407.1 526 43.2
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 4.0e-111 406.4 554 44.2
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 5.2e-111 406.0 581 41.0
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 1.5e-110 404.4 564 44.9
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.0e-110 404.1 548 45.6
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 4.4e-110 402.9 547 45.9
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 2.4e-108 397.1 541 45.5
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 2.7e-107 393.7 543 43.6
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 3.5e-107 393.3 587 43.1
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 1.3e-106 391.3 563 40.7
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 1.7e-106 391.0 541 40.3
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 2.3e-106 390.6 548 44.3
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 5.6e-105 386.0 566 39.8
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 3.6e-104 383.3 529 45.0
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 8.1e-104 382.1 548 45.3
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 3.4e-102 376.7 551 43.0
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 9.8e-102 375.2 511 41.1
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 4.9e-101 372.9 575 42.3
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 8.3e-101 372.1 526 42.0
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 3.2e-100 370.2 576 44.4
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 1.2e-99 368.2 544 46.1
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 2.7e-99 367.1 510 42.2
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 6.2e-96 355.9 544 38.8
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.1e-95 355.1 530 39.4
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 5.8e-94 349.4 363 52.3
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 1.9e-92 344.4 557 38.6
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 2.4e-92 344.0 539 39.7
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 2.7e-91 340.5 467 46.5
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 2.1e-88 330.9 561 39.8
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 6.2e-88 329.3 545 38.3
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 2.7e-83 313.9 401 51.6
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 9.6e-81 305.4 394 48.5
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 2.8e-80 303.9 561 40.1
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 6.9e-79 299.3 487 37.0
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 2.6e-78 297.4 493 37.3
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 2.6e-78 297.4 538 39.8
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 5.8e-78 296.2 364 53.6
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 1.3e-77 295.0 346 46.2
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 1.7e-77 294.7 503 37.6
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 1.7e-77 294.7 555 34.1
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 1.9e-76 291.2 549 33.9
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 2.3e-74 284.3 368 44.3
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 1.6e-72 278.1 507 35.1
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 3.1e-71 273.9 548 36.3
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 1.2e-70 271.9 510 35.9
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 3.4e-70 270.4 463 37.6
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 3.2e-68 263.8 342 43.6
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 1.1e-65 255.4 509 36.0
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 5.8e-62 243.0 606 30.2
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 1.5e-54 218.4 245 49.8
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 4.5e-54 216.9 645 27.4
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 1.2e-51 208.8 300 43.0
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 4.6e-51 206.8 240 47.9
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 1.7e-48 198.4 316 37.7
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 1.2e-46 192.2 360 32.8
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 7.2e-44 183.0 254 41.7
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 9.1e-39 166.0 316 39.6
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 1.9e-36 158.3 127 59.8
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 2.6e-33 147.9 134 53.0
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 2.4e-31 141.4 113 52.2
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 1.2e-30 139.0 267 34.5
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 1.0e-29 136.0 132 50.0
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 1.9e-28 131.7 121 48.8
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 2.5e-28 131.3 130 46.2
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 1.4e-26 125.6 124 47.6
C01p11360 Brassica napus HOM05D004644 ORTHO05D041344 1.8e-26 125.2 78 80.8
BolC1t01105H Brassica oleracea HOM05D004644 ORTHO05D041344 1.8e-26 125.2 78 80.8
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 1.8e-26 125.2 90 55.6
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.8e-26 125.2 134 46.3
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 2.3e-26 124.8 110 49.1
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 3.0e-26 124.4 120 50.0
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 5.2e-26 123.6 116 50.9
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 5.2e-26 123.6 92 51.1
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 2.6e-25 121.3 246 36.2
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 2.8e-24 117.9 100 54.0
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 7.0e-23 113.2 120 45.8
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 7.7e-22 109.8 72 54.2
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 2.2e-21 108.2 195 39.5
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 3.2e-20 104.4 109 46.8
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 5.5e-20 103.6 89 48.3
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.0e-17 95.1 124 34.7
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 3.4e-17 94.4 89 37.1
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 1.4e-15 89.0 94 51.1
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 5.4e-15 87.0 95 48.4
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 5.4e-15 87.0 146 36.3
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 2.7e-14 84.7 70 51.4
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 5.9e-14 83.6 73 46.6
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 5.9e-14 83.6 86 52.3
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 5.0e-13 80.5 69 44.9
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 6.5e-13 80.1 85 45.9
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.5e-12 79.0 68 45.6
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 1.2e-11 75.9 64 48.4
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 2.1e-11 75.1 100 39.0
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 4.7e-11 73.9 77 41.6
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 6.1e-11 73.6 104 37.5
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 6.1e-11 73.6 104 37.5
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 1.8e-10 72.0 113 38.1
Glyma.07G162100 Glycine max HOM05D003568 ORTHO05D004104 2.6e-09 68.2 66 51.5
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 2.6e-09 68.2 56 60.7
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 3.4e-09 67.8 59 50.8
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 5.7e-09 67.0 63 42.9
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 9.8e-09 66.2 38 63.2
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 2.4e-07 61.6 57 43.9
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 4.5e-06 57.4 62 43.5


User provided reference genes

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