Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 4.3e-130 468.0 238 100.0
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 1.1e-128 463.4 238 99.2
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 9.0e-128 460.3 238 98.3
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 4.0e-120 434.9 238 95.0
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 2.2e-110 402.5 241 86.3
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 2.5e-109 399.1 217 94.0
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 3.0e-107 392.1 241 85.1
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 1.1e-106 390.2 238 83.2
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 1.5e-106 389.8 241 83.4
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 8.5e-102 374.0 242 82.6
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 1.4e-101 373.2 242 82.2
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 3.2e-101 372.1 242 82.2
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 4.7e-100 368.2 239 79.9
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 1.3e-97 360.1 267 74.9
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 2.2e-97 359.4 241 78.0
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 2.4e-96 355.9 290 69.3
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 9.4e-85 317.4 239 70.3
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 1.3e-81 307.0 241 69.7
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 2.4e-80 302.8 242 66.5
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 1.5e-77 293.5 151 93.4
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 4.2e-77 292.0 195 73.3
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 9.4e-77 290.8 194 72.7
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 8.0e-76 287.7 194 72.2
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 8.0e-76 287.7 194 72.2
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 8.0e-76 287.7 242 64.0
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 3.0e-75 285.8 247 60.7
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 1.2e-74 283.9 243 61.3
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 2.0e-74 283.1 239 61.5
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 3.4e-74 282.3 248 60.5
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 2.8e-73 279.3 193 70.5
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 3.7e-73 278.9 183 75.4
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 8.3e-73 277.7 193 70.5
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 8.3e-73 277.7 173 76.9
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 8.3e-73 277.7 236 62.7
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 1.1e-72 277.3 173 78.0
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 1.4e-72 276.9 237 61.6
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 2.4e-72 276.2 244 61.1
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 3.1e-72 275.8 182 71.4
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 5.4e-72 275.0 249 61.8
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 9.1e-72 274.2 194 70.1
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 9.1e-72 274.2 245 61.6
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 9.1e-72 274.2 291 53.6
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 1.2e-71 273.9 240 62.9
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 4.5e-71 271.9 173 75.7
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 4.5e-71 271.9 179 72.6
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 5.9e-71 271.6 237 62.0
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 7.7e-71 271.2 235 60.9
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 1.0e-70 270.8 247 59.1
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 1.3e-70 270.4 246 61.8
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 1.7e-70 270.0 241 59.8
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 5.0e-70 268.5 232 59.1
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 8.6e-70 267.7 172 74.4
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 1.5e-69 266.9 244 58.6
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 1.9e-69 266.5 235 59.6
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 2.5e-69 266.2 201 67.7
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 3.3e-69 265.8 253 57.7
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 4.2e-69 265.4 191 71.2
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 1.6e-68 263.5 238 59.7
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 2.8e-68 262.7 160 78.1
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 2.8e-68 262.7 160 78.1
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 6.8e-67 258.1 202 65.3
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 8.9e-67 257.7 156 78.2
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 2.0e-66 256.5 233 60.1
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 1.3e-65 253.8 176 70.5
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 1.7e-65 253.4 156 75.0
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 2.2e-65 253.1 154 77.3
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 2.2e-65 253.1 154 77.3
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 3.7e-65 252.3 154 76.0
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 4.9e-65 251.9 156 75.6
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 6.3e-65 251.5 185 67.0
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 6.3e-65 251.5 202 63.4
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 8.3e-65 251.1 155 75.5
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 1.1e-64 250.8 160 73.8
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 1.4e-64 250.4 154 75.3
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 1.4e-64 250.4 194 64.9
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 2.4e-64 249.6 157 74.5
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 3.1e-64 249.2 234 55.6
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 4.1e-64 248.8 158 74.1
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 1.6e-63 246.9 159 71.7
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 2.0e-63 246.5 188 66.0
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 2.7e-63 246.1 160 73.8
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 2.7e-63 246.1 160 73.8
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 2.7e-63 246.1 182 69.2
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 5.9e-63 245.0 159 73.6
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 5.9e-63 245.0 154 74.0
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 1.0e-62 244.2 154 73.4
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 1.0e-62 244.2 175 69.7
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 1.3e-62 243.8 177 67.2
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 1.3e-62 243.8 161 73.3
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 5.0e-62 241.9 291 49.5
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 3.3e-61 239.2 191 64.4
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 4.3e-61 238.8 172 67.4
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 4.3e-61 238.8 154 71.4
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 5.6e-61 238.4 177 67.2
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 3.6e-60 235.7 230 55.2
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 4.7e-60 235.3 205 59.5
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 1.0e-59 234.2 160 71.9
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 2.3e-59 233.0 154 69.5
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 1.2e-58 230.7 174 64.4
A01p40580 Brassica napus HOM05D006308 ORTHO05D007820 2.4e-56 223.0 129 89.1
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 3.0e-54 216.1 155 67.7
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 3.9e-54 215.7 198 56.6
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 1.5e-53 213.8 152 66.4
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 2.5e-53 213.0 152 66.4
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 1.6e-52 210.3 154 65.6
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 2.8e-52 209.5 202 57.9
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 1.3e-49 200.7 170 57.1
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 2.9e-49 199.5 120 80.0
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 5.4e-48 195.3 213 47.9
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 9.2e-48 194.5 143 66.4
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 1.7e-46 190.3 144 61.1
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 3.7e-41 172.6 153 56.9
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 1.0e-38 164.5 144 60.4
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 4.7e-36 155.6 166 48.8
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 4.0e-35 152.5 87 79.3
Nn3g19990 Nelumbo nucifera HOM05D006308 ORTHO05D007820 1.6e-28 130.6 138 52.2
Nn3g19991 Nelumbo nucifera HOM05D006308 ORTHO05D007820 1.6e-28 130.6 138 52.2
Nn3g18400 Nelumbo nucifera HOM05D006308 ORTHO05D007820 9.0e-27 124.8 85 74.1
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 2.0e-26 123.6 119 47.1
MCO04G467 Micromonas commoda HOM05D006308 ORTHO05D007820 2.1e-23 113.6 116 44.0
CAN.G337.145 Capsicum annuum HOM05D006308 ORTHO05D007820 4.6e-23 112.5 65 80.0
Cre03.g205600 Chlamydomonas reinhardtii HOM05D006308 ORTHO05D007820 1.1e-21 107.8 120 45.0
PRCOL_00002538 Prasinoderma coloniale HOM05D006308 ORTHO05D007820 2.1e-20 103.6 130 40.0
Cpa.g.sc10.49 Carica papaya HOM05D006308 ORTHO05D007820 8.4e-17 91.7 124 47.6
CBR_g48397 Chara braunii HOM05D006308 ORTHO05D007820 3.5e-15 86.3 112 44.6
AUR62039167 Chenopodium quinoa HOM05D007854 ORTHO05D138328 2.0e-10 70.5 37 75.7
Zm00001eb317050 Zea mays HOM05D006308 ORTHO05D007820 1.7e-09 67.4 118 37.3
Actinidia07353 Actinidia chinensis HOM05D006308 ORTHO05D007820 9.3e-08 61.6 43 69.8
Atru.chr11.2245 Acer truncatum HOM05D006725 ORTHO05D008223 2.1e-07 60.5 137 29.9
Atru.chr11.2260 Acer truncatum HOM05D006725 ORTHO05D008223 2.1e-07 60.5 137 29.9
TAR374G1568 Trochodendron aralioides HOM05D006725 ORTHO05D008223 7.9e-07 58.5 114 33.3
Nn4g22406 Nelumbo nucifera HOM05D006725 ORTHO05D008223 6.7e-06 55.5 114 30.7


User provided reference genes

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