Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p51880 Brassica napus HOM05D003885 ORTHO05D004623 3.7e-110 401.7 232 100.0
BolC1t05136H Brassica oleracea HOM05D003885 ORTHO05D004623 1.1e-109 400.2 232 97.8
A05p36370 Brassica napus HOM05D003885 ORTHO05D004623 3.5e-108 395.2 232 95.3
BraA05t22437Z Brassica rapa HOM05D003885 ORTHO05D004623 3.5e-108 395.2 232 95.3
BcaB06g25479 Brassica carinata HOM05D003885 ORTHO05D004623 4.5e-108 394.8 232 95.3
A01p40350 Brassica napus HOM05D003885 ORTHO05D004623 1.7e-107 392.9 232 96.1
BraA01t04070Z Brassica rapa HOM05D003885 ORTHO05D004623 1.7e-107 392.9 232 96.1
BolC3t16892H Brassica oleracea HOM05D003885 ORTHO05D004623 5.0e-107 391.3 232 95.7
A03p38080 Brassica napus HOM05D003885 ORTHO05D004623 1.1e-106 390.2 232 95.3
BraA03t12961Z Brassica rapa HOM05D003885 ORTHO05D004623 1.1e-106 390.2 232 95.3
C05p54750 Brassica napus HOM05D003885 ORTHO05D004623 1.9e-106 389.4 233 95.3
BolC5t34149H Brassica oleracea HOM05D003885 ORTHO05D004623 1.9e-106 389.4 233 95.3
Thhalv10021450m.g Eutrema salsugineum HOM05D003885 ORTHO05D004623 7.2e-106 387.5 232 93.1
BcaB04g18746 Brassica carinata HOM05D003885 ORTHO05D004623 9.4e-106 387.1 230 94.3
Sp3g11380 Schrenkiella parvula HOM05D003885 ORTHO05D004623 1.6e-105 386.3 232 93.1
Carub.0003s1256 Capsella rubella HOM05D003885 ORTHO05D004623 1.5e-103 379.8 232 93.1
AL3G24950 Arabidopsis lyrata HOM05D003885 ORTHO05D004623 3.4e-103 378.6 232 92.2
CARHR087790 Cardamine hirsuta HOM05D003885 ORTHO05D004623 5.7e-103 377.9 232 92.7
AT3G13200 Arabidopsis thaliana HOM05D003885 ORTHO05D004623 2.2e-102 375.9 232 91.8
BcaC05g29203 Brassica carinata HOM05D003885 ORTHO05D004623 5.4e-101 371.3 233 92.7
Aa31LG8G410 Aethionema arabicum HOM05D003885 ORTHO05D004623 7.0e-101 370.9 232 89.7
THA.LOC104822723 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 1.8e-96 356.3 232 89.2
C03p46210 Brassica napus HOM05D003885 ORTHO05D004623 2.7e-92 342.4 232 87.5
THA.LOC104815689 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 7.8e-92 340.9 236 85.6
THA.LOC104810295 Tarenaya hassleriana HOM05D003885 ORTHO05D004623 3.3e-90 335.5 232 85.3
Potri.001G370366 Populus trichocarpa HOM05D003885 ORTHO05D004623 1.2e-89 333.6 232 81.9
Atru.chr2.3832 Acer truncatum HOM05D003885 ORTHO05D004623 4.0e-88 328.6 232 83.6
Actinidia30379 Actinidia chinensis HOM05D003885 ORTHO05D004623 5.2e-88 328.2 232 80.6
Ah.06g181560 Amaranthus hybridus HOM05D003885 ORTHO05D004623 6.8e-88 327.8 233 79.0
CSS0008032 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 6.8e-88 327.8 232 78.4
CSS0014433 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 6.8e-88 327.8 232 78.4
CANSAT56G2895 Cannabis sativa HOM05D003885 ORTHO05D004623 1.2e-87 327.0 232 81.9
Ah.13g073470 Amaranthus hybridus HOM05D003885 ORTHO05D004623 1.5e-87 326.6 235 78.7
ClCG10G004480 Citrullus lanatus HOM05D003885 ORTHO05D004623 2.0e-87 326.2 232 81.9
Haze_09860 Corylus avellana HOM05D003885 ORTHO05D004623 2.0e-87 326.2 232 79.7
Nn1g07757 Nelumbo nucifera HOM05D003885 ORTHO05D004623 9.8e-87 323.9 232 80.2
Lj4g0022976 Lotus japonicus HOM05D003885 ORTHO05D004623 2.9e-86 322.4 232 79.7
FAN14G2004 Fragaria x ananassa HOM05D003885 ORTHO05D004623 3.7e-86 322.0 234 80.3
Manes.03G143400 Manihot esculenta HOM05D003885 ORTHO05D004623 3.7e-86 322.0 232 80.2
Prupe.6G027200 Prunus persica HOM05D003885 ORTHO05D004623 3.7e-86 322.0 233 79.8
Cfa016929 Carpinus fangiana HOM05D003885 ORTHO05D004623 4.9e-86 321.6 232 78.9
Gohir.D13G134400 Gossypium hirsutum HOM05D003885 ORTHO05D004623 8.3e-86 320.9 232 80.2
Lj1g0011673 Lotus japonicus HOM05D003885 ORTHO05D004623 8.3e-86 320.9 232 79.7
COL.COLO4_07729 Corchorus olitorius HOM05D003885 ORTHO05D004623 1.1e-85 320.5 232 78.4
Gohir.A13G131100 Gossypium hirsutum HOM05D003885 ORTHO05D004623 1.1e-85 320.5 232 80.2
TAR629G2602 Trochodendron aralioides HOM05D003885 ORTHO05D004623 4.1e-85 318.5 232 76.7
TPR.G2621 Trifolium pratense HOM05D003885 ORTHO05D004623 5.4e-85 318.2 232 75.9
Gorai.013G150700 Gossypium raimondii HOM05D003885 ORTHO05D004623 7.0e-85 317.8 233 80.7
Hund01874 Selenicereus undatus HOM05D003885 ORTHO05D004623 7.0e-85 317.8 233 81.5
Hund01875 Selenicereus undatus HOM05D003885 ORTHO05D004623 9.2e-85 317.4 232 81.5
TWI39G1241 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 9.2e-85 317.4 232 77.2
Duzib213G0370 Durio zibethinus HOM05D003885 ORTHO05D004623 1.6e-84 316.6 232 79.7
arahy.Tifrunner.gnm1.ann1.JC0UDE Arachis hypogaea HOM05D003885 ORTHO05D004623 3.5e-84 315.5 232 80.2
Ciclev10009386m.g Citrus clementina HOM05D003885 ORTHO05D004623 3.5e-84 315.5 232 80.2
FAN14G0574 Fragaria x ananassa HOM05D003885 ORTHO05D004623 4.6e-84 315.1 234 81.2
Os06g0106100 Oryza sativa ssp. japonica HOM05D003885 ORTHO05D004623 4.6e-84 315.1 233 76.0
Rhsim06G0232400 Rhododendron simsii HOM05D003885 ORTHO05D004623 4.6e-84 315.1 247 72.5
FAN05G2176 Fragaria x ananassa HOM05D003885 ORTHO05D004623 5.9e-84 314.7 235 80.9
FvH4_6g22570 Fragaria vesca HOM05D003885 ORTHO05D004623 1.0e-83 313.9 234 80.8
Ca_21964_v3 Cicer arietinum L. HOM05D003885 ORTHO05D004623 1.7e-83 313.2 232 80.2
Glyma.05G059200 Glycine max HOM05D003885 ORTHO05D004623 1.7e-83 313.2 232 80.2
TAR627G0008 Trochodendron aralioides HOM05D003885 ORTHO05D004623 1.7e-83 313.2 232 76.3
QL08p003216 Quercus lobata HOM05D003885 ORTHO05D004623 3.9e-83 312.0 232 77.2
FAN09G2902 Fragaria x ananassa HOM05D003885 ORTHO05D004623 6.6e-83 311.2 235 80.4
Sed0017804 Sechium edule HOM05D003885 ORTHO05D004623 6.6e-83 311.2 232 77.6
RcHm_v2.0_Chr3g0480061 Rosa chinensis HOM05D003885 ORTHO05D004623 8.6e-83 310.8 235 79.1
Thecc.07G008300 Theobroma cacao HOM05D003885 ORTHO05D004623 8.6e-83 310.8 232 79.7
Cc05_g15250 Coffea canephora HOM05D003885 ORTHO05D004623 1.1e-82 310.5 232 78.9
VMungo0251G1810 Vigna mungo HOM05D003885 ORTHO05D004623 2.5e-82 309.3 232 79.3
Lalb_Chr16g0386671 Lupinus albus HOM05D003885 ORTHO05D004623 3.3e-82 308.9 232 78.4
Sed0004751 Sechium edule HOM05D003885 ORTHO05D004623 3.3e-82 308.9 232 78.0
CsaV3_3G004310 Cucumis sativus L. HOM05D003885 ORTHO05D004623 5.6e-82 308.1 232 77.2
Psat0s1834g0040 Pisum sativum HOM05D003885 ORTHO05D004623 5.6e-82 308.1 232 75.4
PGR083G1050 Punica granatum HOM05D003885 ORTHO05D004623 5.6e-82 308.1 233 82.0
Zm00001eb338740 Zea mays HOM05D003885 ORTHO05D004623 5.6e-82 308.1 233 76.0
MD03G1032500 Malus domestica HOM05D003885 ORTHO05D004623 9.5e-82 307.4 233 76.0
MD11G1036400 Malus domestica HOM05D003885 ORTHO05D004623 9.5e-82 307.4 233 76.0
Zm00001eb119790 Zea mays HOM05D003885 ORTHO05D004623 9.5e-82 307.4 234 75.6
Glyma.17G141500 Glycine max HOM05D003885 ORTHO05D004623 1.6e-81 306.6 232 77.6
EL10Ac4g07536 Beta vulgaris HOM05D003885 ORTHO05D004623 2.1e-81 306.2 244 75.4
MELO3C014122.2 Cucumis melo HOM05D003885 ORTHO05D004623 3.6e-81 305.4 232 77.2
Medtr4g100970 Medicago truncatula HOM05D003885 ORTHO05D004623 4.7e-81 305.1 232 76.3
Lj1C893G21 Lonicera japonica HOM05D003885 ORTHO05D004623 1.8e-80 303.1 232 72.4
Phvul.003G220300 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 2.0e-79 299.7 232 77.2
DCAR_019010 Daucus carota HOM05D003885 ORTHO05D004623 2.6e-79 299.3 232 75.0
Aqoxy3G02916 Aquilegia oxysepala HOM05D003885 ORTHO05D004623 3.4e-79 298.9 235 74.0
Eucgr.F02030 Eucalyptus grandis HOM05D003885 ORTHO05D004623 3.4e-79 298.9 233 79.4
DCAR_003369 Daucus carota HOM05D003885 ORTHO05D004623 7.5e-79 297.7 232 75.9
HPP92_015188 Vanilla planifolia HOM05D003885 ORTHO05D004623 7.5e-79 297.7 236 72.5
ATR1153G045 Amborella trichopoda HOM05D003885 ORTHO05D004623 2.9e-78 295.8 235 77.0
TWI38G2335 Tripterygium wilfordii HOM05D003885 ORTHO05D004623 2.9e-78 295.8 232 74.6
Lsat_1_v5_gn_5_188801 Lactuca sativa HOM05D003885 ORTHO05D004623 4.9e-78 295.0 233 75.5
CAN.G492.53 Capsicum annuum HOM05D003885 ORTHO05D004623 6.4e-78 294.7 232 75.0
Sopen07g033990 Solanum pennellii HOM05D003885 ORTHO05D004623 4.1e-77 292.0 232 77.6
CiPaw.12G140300 Carya illinoinensis HOM05D003885 ORTHO05D004623 5.4e-77 291.6 232 75.0
PSO210G1946 Papaver somniferum HOM05D003885 ORTHO05D004623 7.0e-77 291.2 232 75.4
ECA246G5298 Erigeron canadensis HOM05D003885 ORTHO05D004623 1.2e-76 290.4 232 74.6
PSO210G5551 Papaver somniferum HOM05D003885 ORTHO05D004623 1.2e-76 290.4 232 75.4
Sabra16G0243800 Salix brachista HOM05D003885 ORTHO05D004623 1.2e-76 290.4 252 65.5
vmacro11612 Vaccinium macrocarpon HOM05D003885 ORTHO05D004623 2.7e-76 289.3 232 68.1
PGSC0003DMG400008684 Solanum tuberosum HOM05D003885 ORTHO05D004623 6.0e-76 288.1 233 73.0
Solyc10g005800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 1.0e-75 287.3 234 74.8
Sopen10g001770 Solanum pennellii HOM05D003885 ORTHO05D004623 1.0e-75 287.3 234 74.8
AUR62017134 Chenopodium quinoa HOM05D003885 ORTHO05D004623 1.7e-75 286.6 238 65.1
GSVIVG01014735001 Vitis vinifera HOM05D003885 ORTHO05D004623 1.7e-75 286.6 232 74.6
Nitab4.5_0010643g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 3.9e-75 285.4 232 73.7
PGSC0003DMG400022160 Solanum tuberosum HOM05D003885 ORTHO05D004623 1.1e-74 283.9 239 75.3
Dinv40883 Davidia involucrata HOM05D003885 ORTHO05D004623 1.9e-74 283.1 232 65.9
Nitab4.5_0005478g0040 Nicotiana tabacum HOM05D003885 ORTHO05D004623 1.9e-74 283.1 234 68.4
Sc03g0011570 Simmondsia chinensis HOM05D003885 ORTHO05D004623 9.5e-74 280.8 233 73.4
MBI11_g04749_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 1.2e-73 280.4 237 73.8
Phvul.008G217400 Phaseolus vulgaris HOM05D003885 ORTHO05D004623 1.2e-73 280.4 232 68.5
MSTRG.14500 Avicennia marina HOM05D003885 ORTHO05D004623 6.2e-73 278.1 232 73.7
Hma1.2p1_0193F.1_g083890 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.1e-72 277.3 286 57.3
Lalb_Chr05g0221281 Lupinus albus HOM05D003885 ORTHO05D004623 5.2e-72 275.0 232 72.4
Peaxi162Scf00139g01026 Petunia axillaris HOM05D003885 ORTHO05D004623 1.2e-71 273.9 232 66.4
SalBow2G3065 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.5e-71 273.5 232 67.7
FAN02G3468 Fragaria x ananassa HOM05D003885 ORTHO05D004623 4.4e-71 271.9 219 78.5
AUR62035674 Chenopodium quinoa HOM05D003885 ORTHO05D004623 1.7e-70 270.0 234 64.5
Oeu039420.1 Olea europaea HOM05D003885 ORTHO05D004623 1.7e-70 270.0 228 73.2
unitig_61.g26133 Utricularia gibba HOM05D003885 ORTHO05D004623 2.2e-70 269.6 232 71.1
Duzib170G0277 Durio zibethinus HOM05D003885 ORTHO05D004623 3.7e-70 268.9 232 69.0
MSTRG.13030 Avicennia marina HOM05D003885 ORTHO05D004623 1.4e-69 266.9 232 71.1
Mapoly0072s0064 Marchantia polymorpha HOM05D003885 ORTHO05D004623 1.4e-69 266.9 235 69.4
Pp3c5_15120 Physcomitrium patens HOM05D003885 ORTHO05D004623 1.4e-69 266.9 236 66.9
SalBow2G0786 Salvia bowleyana HOM05D003885 ORTHO05D004623 2.1e-68 263.1 232 72.0
SalBow2G1425 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.3e-67 260.4 232 71.6
unitig_0.g990 Utricularia gibba HOM05D003885 ORTHO05D004623 1.7e-67 260.0 232 71.1
Migut.M01631 Erythranthe guttata HOM05D003885 ORTHO05D004623 5.1e-67 258.5 232 71.6
SalBow8G3434 Salvia bowleyana HOM05D003885 ORTHO05D004623 6.6e-67 258.1 232 71.1
SalBow2G3218 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.1e-66 257.3 232 70.7
Lsat_1_v5_gn_5_2000 Lactuca sativa HOM05D003885 ORTHO05D004623 1.4e-64 250.4 271 59.4
AagrBONN_evm.TU.Sc2ySwM_228.690 Anthoceros agrestis HOM05D003885 ORTHO05D004623 1.8e-64 250.0 232 64.7
Nitab4.5_0003328g0110 Nicotiana tabacum HOM05D003885 ORTHO05D004623 6.8e-64 248.1 234 68.8
HanXRQChr05g0160321 Helianthus annuus HOM05D003885 ORTHO05D004623 3.2e-61 239.2 232 67.2
CBR_g58788 Chara braunii HOM05D003885 ORTHO05D004623 7.1e-61 238.0 234 64.1
HanXRQChr08g0233271 Helianthus annuus HOM05D003885 ORTHO05D004623 9.2e-61 237.7 232 66.8
SHI27704 Sapria himalayana HOM05D003885 ORTHO05D004623 5.6e-58 228.4 191 75.4
SMO356G0623 Selaginella moellendorffii HOM05D003885 ORTHO05D004623 3.2e-53 212.6 237 59.9
Actinidia10568 Actinidia chinensis HOM05D003885 ORTHO05D004623 2.1e-52 209.9 188 69.1
Nn1g07559 Nelumbo nucifera HOM05D003885 ORTHO05D004623 7.8e-52 208.0 157 77.7
CSS0035354 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 3.0e-51 206.1 232 59.9
CSS0032461 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 2.1e-49 199.9 188 68.6
Nitab4.5_0000152g0340 Nicotiana tabacum HOM05D003885 ORTHO05D004623 8.1e-49 198.0 255 51.8
MCO14G028 Micromonas commoda HOM05D003885 ORTHO05D004623 3.8e-46 189.1 236 55.9
Hma1.2p1_0133F.1_g061250 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 8.4e-46 188.0 120 79.2
SGA_v2.0_scaffold8G04417 Striga asiatica HOM05D003885 ORTHO05D004623 1.6e-44 183.7 156 72.4
TPR.G37597 Trifolium pratense HOM05D003885 ORTHO05D004623 6.0e-44 181.8 120 76.7
BcaC01g04006 Brassica carinata HOM05D003885 ORTHO05D004623 7.9e-44 181.4 98 93.9
CSS0021051 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.8e-43 180.3 119 75.6
Cre24.g755447 Chlamydomonas reinhardtii HOM05D003885 ORTHO05D004623 2.3e-43 179.9 243 52.7
Solyc07g065800.3 Solanum lycopersicum HOM05D003885 ORTHO05D004623 6.2e-41 171.8 157 74.5
SalBow2G2880 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.2e-39 167.5 113 77.0
SalBow2G0143 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.5e-39 167.2 113 76.1
SalBow2G2704 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.7e-38 163.7 113 75.2
CAN.G1427.13 Capsicum annuum HOM05D000822 ORTHO05D004949 2.2e-38 163.3 139 73.4
RcHm_v2.0_Chr1g0318721 Rosa chinensis HOM05D003885 ORTHO05D004623 4.6e-36 155.6 121 70.2
BcaB04g21002 Brassica carinata HOM05D003885 ORTHO05D004623 3.0e-35 152.9 90 86.7
arahy.Tifrunner.gnm1.ann1.BGFV7A Arachis hypogaea HOM05D003885 ORTHO05D004623 6.2e-33 145.2 94 81.9
Hma1.2p1_0133F.1_g061260 Hydrangea macrophylla HOM05D003885 ORTHO05D004623 1.8e-32 143.7 98 75.5
C05p54720 Brassica napus HOM05D003885 ORTHO05D004623 2.4e-32 143.3 98 80.6
MCO14G027 Micromonas commoda HOM05D003885 ORTHO05D004623 9.7e-26 121.3 181 51.9
MBI19_g41323_MAGBIO Magnolia biondii HOM05D003885 ORTHO05D004623 6.3e-25 118.6 88 68.2
TPR.G37600 Trifolium pratense HOM05D003885 ORTHO05D004623 6.3e-25 118.6 70 81.4
PRCOL_00003569 Prasinoderma coloniale HOM05D003885 ORTHO05D004623 1.5e-23 114.0 232 41.4
SalBow8G5188 Salvia bowleyana HOM05D003885 ORTHO05D004623 1.0e-22 111.3 183 46.4
COL.COLO4_09698 Corchorus olitorius HOM05D003885 ORTHO05D004623 1.3e-22 110.9 97 63.9
Zm00001eb157240 Zea mays HOM05D003885 ORTHO05D004623 3.2e-21 106.3 71 76.1
RcHm_v2.0_Chr3g0468911 Rosa chinensis HOM05D003885 ORTHO05D004623 2.3e-19 100.1 229 36.7
ATR0733G199 Amborella trichopoda HOM05D003885 ORTHO05D004623 1.3e-17 94.4 73 71.2
ATR0733G138 Amborella trichopoda HOM05D003885 ORTHO05D004623 8.5e-14 81.6 44 86.4
Lsat_1_v5_gn_8_106160 Lactuca sativa HOM05D003885 ORTHO05D004623 6.1e-12 75.5 56 66.1
PSO384G2596 Papaver somniferum HOM05D003885 ORTHO05D004623 6.1e-12 75.5 72 56.9
Haze_27574 Corylus avellana HOM05D003885 ORTHO05D164292 1.1e-10 71.2 86 45.3
CSS0038981 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 4.1e-08 62.8 90 48.9
CSS0001317 Camellia sinensis var. sinensis HOM05D003885 ORTHO05D004623 1.5e-07 60.8 88 46.6
C07p36730 Brassica napus HOM05D046801 ORTHO05D100950 2.6e-07 60.1 42 76.2
C08p40740 Brassica napus HOM05D046801 ORTHO05D099183 6.5e-06 55.5 42 71.4
Zm00001eb225910 Zea mays HOM05D003885 ORTHO05D444501 8.5e-06 55.1 59 57.6


User provided reference genes

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