Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p40970 Brassica napus HOM05D006635 ORTHO05D008047 4.8e-35 150.6 75 100.0
C01p40990 Brassica napus HOM05D006635 ORTHO05D008047 1.2e-25 119.4 56 100.0
BcaC09g49245 Brassica carinata HOM05D006635 ORTHO05D008047 3.5e-25 117.9 56 98.2
BolC1t04048H Brassica oleracea HOM05D006635 ORTHO05D008047 3.5e-25 117.9 56 98.2
A01p31980 Brassica napus HOM05D006635 ORTHO05D008047 2.2e-24 115.2 56 96.4
BraA01t03324Z Brassica rapa HOM05D006635 ORTHO05D008047 2.2e-24 115.2 56 96.4
BcaB04g20471 Brassica carinata HOM05D006635 ORTHO05D008047 1.9e-23 112.1 57 93.0
AT3G23100 Arabidopsis thaliana HOM05D006635 ORTHO05D008047 6.1e-22 107.1 56 85.7
Carub.0003s2327 Capsella rubella HOM05D006635 ORTHO05D008047 1.4e-21 105.9 56 85.7
AL3G37550 Arabidopsis lyrata HOM05D006635 ORTHO05D008047 2.3e-21 105.1 56 83.9
Thhalv10022194m.g Eutrema salsugineum HOM05D006635 ORTHO05D008047 8.8e-21 103.2 56 82.1
Sp3g20780 Schrenkiella parvula HOM05D006635 ORTHO05D008047 2.6e-20 101.7 56 82.1
CARHR099010 Cardamine hirsuta HOM05D006635 ORTHO05D008047 7.4e-20 100.1 54 83.3
THA.LOC104808600 Tarenaya hassleriana HOM05D006635 ORTHO05D008047 3.8e-16 87.8 56 66.1
Aa31LG8G9580 Aethionema arabicum HOM05D006635 ORTHO05D008047 6.5e-16 87.0 57 68.4
Thecc.04G246700 Theobroma cacao HOM05D006635 ORTHO05D008047 1.2e-14 82.8 53 67.9
MSTRG.4101 Avicennia marina HOM05D006635 ORTHO05D008047 6.1e-14 80.5 53 66.0
COL.COLO4_15799 Corchorus olitorius HOM05D006635 ORTHO05D008047 3.0e-13 78.2 56 57.1
Gohir.A10G113600 Gossypium hirsutum HOM05D006635 ORTHO05D008047 4.0e-13 77.8 49 65.3
Gohir.D10G153800 Gossypium hirsutum HOM05D006635 ORTHO05D008047 4.0e-13 77.8 49 65.3
Gorai.011G171700 Gossypium raimondii HOM05D006635 ORTHO05D008047 4.0e-13 77.8 49 65.3
Cpa.g.sc58.53 Carica papaya HOM05D006635 ORTHO05D008047 1.2e-12 76.3 55 60.0
CANSAT78G1035 Cannabis sativa HOM05D006635 ORTHO05D008047 1.5e-12 75.9 52 59.6
Ciclev10005690m.g Citrus clementina HOM05D006635 ORTHO05D008047 1.5e-12 75.9 53 62.3
CiPaw.01G189900 Carya illinoinensis HOM05D006635 ORTHO05D008047 2.0e-12 75.5 52 61.5
MD13G1208000 Malus domestica HOM05D006635 ORTHO05D008047 3.4e-12 74.7 56 57.1
Atru.chr4.2211 Acer truncatum HOM05D006635 ORTHO05D008047 4.4e-12 74.3 57 59.6
arahy.Tifrunner.gnm1.ann1.20YP49 Arachis hypogaea HOM05D006635 ORTHO05D008047 4.4e-12 74.3 56 57.1
arahy.Tifrunner.gnm1.ann1.P8HXAC Arachis hypogaea HOM05D006635 ORTHO05D008047 4.4e-12 74.3 56 57.1
PGSC0003DMG400016282 Solanum tuberosum HOM05D006635 ORTHO05D008047 4.4e-12 74.3 53 62.3
vmacro15410 Vaccinium macrocarpon HOM05D006635 ORTHO05D008047 5.7e-12 73.9 58 60.3
Ciclev10005689m.g Citrus clementina HOM05D006635 ORTHO05D008047 7.5e-12 73.6 51 60.8
Migut.G00439 Erythranthe guttata HOM05D006635 ORTHO05D008047 7.5e-12 73.6 57 57.9
Potri.010G075900 Populus trichocarpa HOM05D006635 ORTHO05D008047 7.5e-12 73.6 55 58.2
Sabra10G0032800 Salix brachista HOM05D006635 ORTHO05D008047 9.7e-12 73.2 55 58.2
Solyc06g053770.4 Solanum lycopersicum HOM05D006635 ORTHO05D008047 9.7e-12 73.2 53 62.3
Haze_11307 Corylus avellana HOM05D006635 ORTHO05D008047 1.3e-11 72.8 52 57.7
Medtr1g075330 Medicago truncatula HOM05D006635 ORTHO05D008047 1.7e-11 72.4 52 57.7
QL06p015844 Quercus lobata HOM05D006635 ORTHO05D008047 2.2e-11 72.0 52 53.8
Sopen06g018890 Solanum pennellii HOM05D006635 ORTHO05D008047 2.2e-11 72.0 53 60.4
TWI53G1330 Tripterygium wilfordii HOM05D006635 ORTHO05D008047 2.2e-11 72.0 53 58.5
TWI53G1448 Tripterygium wilfordii HOM05D006635 ORTHO05D008047 2.2e-11 72.0 53 58.5
Haze_11310 Corylus avellana HOM05D006635 ORTHO05D008047 3.7e-11 71.2 52 55.8
Prupe.1G031500 Prunus persica HOM05D006635 ORTHO05D008047 3.7e-11 71.2 56 55.4
CSS0008878 Camellia sinensis var. sinensis HOM05D006635 ORTHO05D008047 4.8e-11 70.9 58 58.6
Cfa008372 Carpinus fangiana HOM05D003636 ORTHO05D005160 4.8e-11 70.9 52 57.7
EL10Ac3g05891 Beta vulgaris HOM05D006635 ORTHO05D008047 6.3e-11 70.5 60 55.0
Cc03_g04920 Coffea canephora HOM05D006635 ORTHO05D008047 8.3e-11 70.1 59 50.8
Eucgr.H03153 Eucalyptus grandis HOM05D006635 ORTHO05D008047 8.3e-11 70.1 58 55.2
Hma1.2p1_0650F.1_g195460 Hydrangea macrophylla HOM05D006635 ORTHO05D008047 8.3e-11 70.1 58 53.4
Hund11856 Selenicereus undatus HOM05D006635 ORTHO05D008047 8.3e-11 70.1 54 57.4
Oeu058885.1 Olea europaea HOM05D006635 ORTHO05D008047 1.1e-10 69.7 58 53.4
HanXRQChr13g0424511 Helianthus annuus HOM05D006635 ORTHO05D008047 1.8e-10 68.9 50 60.0
HPP92_023529 Vanilla planifolia HOM05D006635 ORTHO05D008047 3.1e-10 68.2 59 52.5
ECA240G1129 Erigeron canadensis HOM05D000856 ORTHO05D002253 4.1e-10 67.8 52 57.7
FAN27G3431 Fragaria x ananassa HOM05D006635 ORTHO05D008047 4.1e-10 67.8 49 55.1
Lalb_Chr02g0150381 Lupinus albus HOM05D006635 ORTHO05D008047 4.1e-10 67.8 60 48.3
GSVIVG01018125001 Vitis vinifera HOM05D006635 ORTHO05D008047 4.1e-10 67.8 50 56.0
RcHm_v2.0_Chr1g0323991 Rosa chinensis HOM05D006635 ORTHO05D008047 5.3e-10 67.4 49 55.1
Sed0017322 Sechium edule HOM05D006635 ORTHO05D008047 5.3e-10 67.4 49 57.1
Aqoxy5G00314 Aquilegia oxysepala HOM05D006635 ORTHO05D008047 7.0e-10 67.0 58 53.4
ATR0824G049 Amborella trichopoda HOM05D006635 ORTHO05D008047 9.1e-10 66.6 50 60.0
Sc19g0003750 Simmondsia chinensis HOM05D006635 ORTHO05D008047 9.1e-10 66.6 62 48.4
Sc19g0005210 Simmondsia chinensis HOM05D006635 ORTHO05D008047 9.1e-10 66.6 62 48.4
AUR62002251 Chenopodium quinoa HOM05D006635 ORTHO05D008047 1.2e-09 66.2 65 49.2
Ca_09839_v3 Cicer arietinum L. HOM05D006635 ORTHO05D008047 1.2e-09 66.2 52 50.0
Manes.15G037200 Manihot esculenta HOM05D006635 ORTHO05D008047 1.2e-09 66.2 52 51.9
TPR.G27195 Trifolium pratense HOM05D006635 ORTHO05D008047 1.2e-09 66.2 52 50.0
Actinidia08441 Actinidia chinensis HOM05D006635 ORTHO05D008047 1.6e-09 65.9 56 57.1
Nitab4.5_0008721g0010 Nicotiana tabacum HOM05D006635 ORTHO05D008047 1.6e-09 65.9 56 57.1
DCAR_027282 Daucus carota HOM05D006635 ORTHO05D008047 2.7e-09 65.1 53 50.9
TAR636G2119 Trochodendron aralioides HOM05D006635 ORTHO05D008047 2.7e-09 65.1 58 51.7
FvH4_2g07190 Fragaria vesca HOM05D006635 ORTHO05D008047 4.5e-09 64.3 49 53.1
FAN24G3344 Fragaria x ananassa HOM05D006635 ORTHO05D008047 4.5e-09 64.3 49 53.1
Psat4g107880 Pisum sativum HOM05D006635 ORTHO05D008047 4.5e-09 64.3 53 50.9
Ah.13g066120 Amaranthus hybridus HOM05D006635 ORTHO05D008047 1.0e-08 63.2 58 50.0
FAN20G2319 Fragaria x ananassa HOM05D006635 ORTHO05D008047 1.0e-08 63.2 49 51.0
CAN.G118.6 Capsicum annuum HOM05D006635 ORTHO05D008047 1.3e-08 62.8 54 53.7
Dinv29905 Davidia involucrata HOM05D006635 ORTHO05D008047 1.3e-08 62.8 55 50.9
Lj5g0017333 Lotus japonicus HOM05D006635 ORTHO05D008047 1.7e-08 62.4 53 49.1
CDE04G0173 Ceratophyllum demersum HOM05D006635 ORTHO05D008047 2.9e-08 61.6 54 50.0
Nitab4.5_0000302g0050 Nicotiana tabacum HOM05D006635 ORTHO05D008047 2.9e-08 61.6 56 53.6
PGR004G0922 Punica granatum HOM05D006635 ORTHO05D008047 3.8e-08 61.2 58 46.6
Nn1g02620 Nelumbo nucifera HOM05D006635 ORTHO05D008047 5.0e-08 60.8 58 50.0
MELO3C018624.2 Cucumis melo HOM05D006635 ORTHO05D008047 8.5e-08 60.1 55 54.5
Lj6A657T45 Lonicera japonica HOM05D006635 ORTHO05D008047 8.5e-08 60.1 55 47.3
CsaV3_7G006710 Cucumis sativus L. HOM05D006635 ORTHO05D008047 1.1e-07 59.7 55 54.5
Glyma.20G205600 Glycine max HOM05D006635 ORTHO05D008047 1.9e-07 58.9 55 40.0
PGR083G1020 Punica granatum HOM05D006635 ORTHO05D008047 2.5e-07 58.5 58 44.8
CSS0031458 Camellia sinensis var. sinensis HOM05D006635 ORTHO05D008047 3.2e-07 58.2 49 55.1
Glyma.10G184800 Glycine max HOM05D006635 ORTHO05D008047 3.2e-07 58.2 55 40.0
Peaxi162Scf00325g00713 Petunia axillaris HOM05D006635 ORTHO05D008047 7.2e-07 57.0 64 43.8
PGR004G0241 Punica granatum HOM05D006635 ORTHO05D008047 7.2e-07 57.0 58 43.1
Ciclev10007171m.g Citrus clementina HOM05D006635 ORTHO05D008047 1.2e-06 56.2 37 59.5
Os03g0740800 Oryza sativa ssp. japonica HOM05D006635 ORTHO05D008047 2.1e-06 55.5 56 39.3
PSO832G2723 Papaver somniferum HOM05D006635 ORTHO05D008047 2.7e-06 55.1 54 46.3
unitig_747.g21677 Utricularia gibba HOM05D006635 ORTHO05D008047 2.7e-06 55.1 51 47.1
BcaC05g27974 Brassica carinata HOM05D006635 ORTHO05D008047 3.6e-06 54.7 32 75.0
Phvul.007G125600 Phaseolus vulgaris HOM05D006635 ORTHO05D008047 3.6e-06 54.7 57 40.4
ClCG09G015590 Citrullus lanatus HOM05D006635 ORTHO05D008047 6.1e-06 53.9 61 45.9


User provided reference genes

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