Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 5.6e-239 830.9 523 100.0
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 3.1e-141 506.1 325 93.2
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 5.4e-117 425.6 586 54.6
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 5.4e-117 425.6 586 54.6
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 1.6e-116 424.1 586 54.4
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 1.1e-114 417.9 570 53.5
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 9.5e-114 414.8 540 59.1
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 8.9e-112 408.3 588 53.6
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 2.0e-111 407.1 586 53.2
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 2.0e-111 407.1 530 57.0
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 7.1e-109 398.7 586 53.1
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 4.6e-100 369.4 588 51.0
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 3.2e-93 346.7 593 49.2
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 1.9e-90 337.4 554 51.6
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 6.2e-81 305.8 537 49.2
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 1.3e-78 298.1 522 49.2
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.7e-78 297.7 482 48.1
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 2.9e-78 297.0 513 49.3
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 6.4e-78 295.8 452 48.5
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 6.4e-78 295.8 530 48.7
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.1e-76 290.8 437 49.0
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 2.7e-76 290.4 330 62.1
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 3.0e-75 287.0 517 48.5
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 3.9e-75 286.6 437 48.5
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 5.1e-75 286.2 437 48.5
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 1.1e-74 285.0 523 48.6
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.6e-73 281.2 525 48.0
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 2.1e-73 280.8 516 42.8
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 8.2e-73 278.9 429 47.8
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 1.4e-72 278.1 586 44.7
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 1.8e-72 277.7 453 47.7
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 1.8e-72 277.7 443 45.8
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 2.4e-72 277.3 438 47.3
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 3.1e-72 276.9 435 48.0
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 6.9e-72 275.8 522 47.3
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 6.9e-72 275.8 440 47.3
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 3.4e-71 273.5 443 45.6
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 5.8e-71 272.7 445 45.6
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 7.6e-71 272.3 435 47.6
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 7.6e-71 272.3 444 48.2
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 1.7e-70 271.2 453 45.3
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 3.8e-70 270.0 444 46.6
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 1.4e-69 268.1 209 81.8
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 1.9e-69 267.7 445 44.9
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 2.5e-69 267.3 438 46.1
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 4.2e-69 266.5 446 46.4
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 4.2e-69 266.5 569 43.9
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 9.3e-69 265.4 523 44.4
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 1.2e-68 265.0 419 46.3
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 1.6e-68 264.6 434 46.8
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 2.1e-68 264.2 586 44.7
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 2.1e-68 264.2 545 44.8
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 3.5e-68 263.5 436 45.6
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 7.9e-68 262.3 432 47.5
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 1.3e-67 261.5 428 45.8
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 2.3e-67 260.8 578 42.9
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 8.7e-67 258.8 521 43.8
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 1.1e-66 258.5 458 44.8
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 1.1e-66 258.5 445 46.1
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 2.5e-66 257.3 442 45.2
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 1.3e-65 255.0 526 45.6
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 1.6e-65 254.6 446 46.0
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 1.6e-65 254.6 444 44.6
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 1.4e-64 251.5 378 50.5
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 2.6e-63 247.3 434 45.2
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 3.4e-63 246.9 530 44.2
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 3.4e-63 246.9 521 45.7
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 3.4e-63 246.9 499 42.7
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 1.0e-62 245.4 436 43.8
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 1.0e-62 245.4 457 42.5
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.7e-62 244.6 442 44.1
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 2.2e-62 244.2 506 44.7
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 2.9e-62 243.8 508 44.3
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 3.8e-62 243.4 442 43.9
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 3.8e-62 243.4 442 43.9
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 3.8e-62 243.4 442 44.1
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 8.5e-62 242.3 436 43.8
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 8.5e-62 242.3 442 43.2
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 8.5e-62 242.3 440 43.4
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 1.1e-61 241.9 497 42.9
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 1.9e-61 241.1 530 42.8
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 1.6e-60 238.0 425 44.0
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 3.6e-60 236.9 437 43.5
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 4.6e-60 236.5 516 40.1
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 1.4e-59 235.0 233 65.7
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 3.0e-59 233.8 530 42.3
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 5.1e-59 233.0 442 43.0
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 3.3e-58 230.3 251 58.6
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 9.7e-58 228.8 437 42.3
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 1.1e-56 225.3 443 41.1
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 1.8e-56 224.6 426 42.5
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 6.9e-56 222.6 437 41.9
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 4.5e-55 219.9 442 40.7
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 5.9e-55 219.5 546 39.9
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 7.7e-55 219.2 437 41.4
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 7.7e-55 219.2 427 40.7
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 1.0e-54 218.8 500 40.6
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 4.7e-52 209.9 448 39.7
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 3.0e-51 207.2 452 39.6
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 4.8e-49 199.9 527 39.5
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 4.8e-49 199.9 446 40.4
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 2.4e-48 197.6 533 37.3
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 2.6e-47 194.1 208 60.1
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 2.3e-43 181.0 435 39.5
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 5.2e-43 179.9 456 37.1
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 8.8e-43 179.1 446 38.1
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 1.3e-41 175.3 456 36.6
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 8.2e-41 172.6 315 50.5
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 5.3e-40 169.9 254 53.5
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 5.9e-39 166.4 180 59.4
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 1.0e-38 165.6 329 44.7
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 3.1e-32 144.1 398 36.2
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 3.8e-30 137.1 496 35.5
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 2.3e-22 111.3 301 40.2
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 1.5e-21 108.6 499 28.1
C02p34840 Brassica napus HOM05D005307 ORTHO05D027550 6.1e-20 103.2 306 39.2
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 6.8e-19 99.8 389 30.1
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 8.9e-19 99.4 382 31.2
BraA01t03245Z Brassica rapa HOM05D005307 ORTHO05D006695 2.4e-16 91.3 79 75.9
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 3.2e-16 90.9 268 34.3
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 1.6e-15 88.6 61 70.5
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 3.9e-14 84.0 61 73.8
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 2.5e-13 81.3 227 34.4
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 1.6e-12 78.6 67 65.7
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 8.9e-11 72.8 148 43.9
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 4.9e-09 67.0 218 34.4
BolC2t09504H Brassica oleracea HOM05D005307 ORTHO05D027550 2.4e-08 64.7 136 44.9
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 4.6e-07 60.5 73 50.7
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 7.8e-07 59.7 36 75.0
BcaC03g15750 Brassica carinata HOM05D005307 ORTHO05D027550 2.3e-06 58.2 131 43.5
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 3.0e-06 57.8 163 33.7
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 5.0e-06 57.0 46 65.2


User provided reference genes

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