Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p39540 Brassica napus HOM05D003334 ORTHO05D004076 2.2e-23 111.3 52 100.0
CDE08G0778 Ceratophyllum demersum HOM05D003334 ORTHO05D004076 6.3e-10 66.6 34 82.4
Glyma.13G008200 Glycine max HOM05D003334 ORTHO05D004076 8.3e-10 66.2 37 75.7
Phvul.010G046300 Phaseolus vulgaris HOM05D003334 ORTHO05D004076 8.3e-10 66.2 37 75.7
VMungo0331G0230 Vigna mungo HOM05D003334 ORTHO05D004076 8.3e-10 66.2 37 75.7
Thhalv10003092m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 1.4e-09 65.5 35 82.9
Glyma.03G108900 Glycine max HOM05D003334 ORTHO05D004076 1.4e-09 65.5 34 79.4
Ca_14800_v3 Cicer arietinum L. HOM05D003334 ORTHO05D004076 1.8e-09 65.1 34 79.4
arahy.Tifrunner.gnm1.ann1.GB3JX0 Arachis hypogaea HOM05D003334 ORTHO05D004076 2.4e-09 64.7 37 73.0
arahy.Tifrunner.gnm1.ann1.L2SHRD Arachis hypogaea HOM05D003334 ORTHO05D004076 2.4e-09 64.7 37 73.0
TPR.G5320 Trifolium pratense HOM05D003334 ORTHO05D004076 2.4e-09 64.7 37 73.0
BcaB04g21381 Brassica carinata HOM05D003334 ORTHO05D004076 3.1e-09 64.3 34 82.4
QL06p038393 Quercus lobata HOM05D003334 ORTHO05D004076 3.1e-09 64.3 37 73.0
Psat2g164840 Pisum sativum HOM05D003334 ORTHO05D004076 4.1e-09 63.9 34 76.5
Psat4g222840 Pisum sativum HOM05D003334 ORTHO05D004076 4.1e-09 63.9 34 76.5
AL3G14620 Arabidopsis lyrata HOM05D003334 ORTHO05D004076 7.0e-09 63.2 34 82.4
AT3G04600 Arabidopsis thaliana HOM05D003334 ORTHO05D004076 7.0e-09 63.2 34 82.4
BcaB04g19317 Brassica carinata HOM05D003334 ORTHO05D004076 7.0e-09 63.2 34 82.4
BcaB04g21362 Brassica carinata HOM05D003334 ORTHO05D004076 7.0e-09 63.2 34 82.4
BcaB06g25549 Brassica carinata HOM05D003334 ORTHO05D004076 7.0e-09 63.2 34 85.3
BcaC01g04365 Brassica carinata HOM05D003334 ORTHO05D004076 7.0e-09 63.2 34 82.4
BcaC01g04366 Brassica carinata HOM05D003334 ORTHO05D004076 7.0e-09 63.2 34 82.4
BcaC09g47791 Brassica carinata HOM05D003334 ORTHO05D004076 7.0e-09 63.2 34 82.4
A01p40810 Brassica napus HOM05D003334 ORTHO05D004076 7.0e-09 63.2 34 82.4
A03p33670 Brassica napus HOM05D003334 ORTHO05D004076 7.0e-09 63.2 34 82.4
BNapus_Darmor_BZH_scaffold_78p00900 Brassica napus HOM05D003334 ORTHO05D004076 7.0e-09 63.2 34 82.4
C03p40860 Brassica napus HOM05D003334 ORTHO05D004076 7.0e-09 63.2 34 82.4
BolC1t05738H Brassica oleracea HOM05D003334 ORTHO05D004076 7.0e-09 63.2 34 82.4
BolC3t16357H Brassica oleracea HOM05D003334 ORTHO05D004076 7.0e-09 63.2 34 82.4
BolC3t16365H Brassica oleracea HOM05D003334 ORTHO05D004076 7.0e-09 63.2 34 82.4
BraA01t04517Z Brassica rapa HOM05D003334 ORTHO05D004076 7.0e-09 63.2 34 82.4
BraA03t12541Z Brassica rapa HOM05D003334 ORTHO05D004076 7.0e-09 63.2 34 82.4
Carub.0003s0375 Capsella rubella HOM05D003334 ORTHO05D004076 7.0e-09 63.2 34 82.4
CARHR078780 Cardamine hirsuta HOM05D003334 ORTHO05D004076 7.0e-09 63.2 35 80.0
Ciclev10008518m.g Citrus clementina HOM05D003334 ORTHO05D004076 7.0e-09 63.2 34 82.4
Thhalv10020864m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 7.0e-09 63.2 34 82.4
Lj7A725T58 Lonicera japonica HOM05D003334 ORTHO05D004076 7.0e-09 63.2 34 82.4
Sp3g03440 Schrenkiella parvula HOM05D003334 ORTHO05D004076 7.0e-09 63.2 34 82.4
TWI34G0756 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 7.0e-09 63.2 34 79.4
Atru.chr7.238 Acer truncatum HOM05D003334 ORTHO05D004076 9.1e-09 62.8 34 79.4
Aqoxy7G02117 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 9.1e-09 62.8 34 76.5
CSS0022391 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 9.1e-09 62.8 34 79.4
CSS0036286 Camellia sinensis var. sinensis HOM05D003334 ORTHO05D004076 9.1e-09 62.8 34 79.4
HanXRQChr11g0333651 Helianthus annuus HOM05D003334 ORTHO05D004076 9.1e-09 62.8 37 75.7
HanXRQChr17g0559071 Helianthus annuus HOM05D003334 ORTHO05D004076 9.1e-09 62.8 37 75.7
Medtr8g007305 Medicago truncatula HOM05D003334 ORTHO05D004076 9.1e-09 62.8 37 75.7
Nn1g02302 Nelumbo nucifera HOM05D003334 ORTHO05D004076 9.1e-09 62.8 34 79.4
Os07g0278400 Oryza sativa ssp. japonica HOM05D003334 ORTHO05D004076 9.1e-09 62.8 37 70.3
Prupe.7G057000 Prunus persica HOM05D003334 ORTHO05D004076 9.1e-09 62.8 37 75.7
Prupe.7G057800 Prunus persica HOM05D003334 ORTHO05D004076 9.1e-09 62.8 37 75.7
RcHm_v2.0_Chr7g0223011 Rosa chinensis HOM05D003334 ORTHO05D004076 9.1e-09 62.8 37 75.7
Sp6g11650 Schrenkiella parvula HOM05D003334 ORTHO05D004076 9.1e-09 62.8 34 82.4
TAR365G0738 Trochodendron aralioides HOM05D003334 ORTHO05D004076 9.1e-09 62.8 34 79.4
TAR636G1778 Trochodendron aralioides HOM05D003334 ORTHO05D004076 9.1e-09 62.8 34 79.4
Cpa.g.sc1142.2 Carica papaya HOM05D003334 ORTHO05D004076 1.2e-08 62.4 37 73.0
Lsat_1_v5_gn_2_16301 Lactuca sativa HOM05D003334 ORTHO05D004076 1.2e-08 62.4 37 73.0
Lalb_Chr21g0312861 Lupinus albus HOM05D003334 ORTHO05D004076 1.2e-08 62.4 37 75.7
Potri.009G159300 Populus trichocarpa HOM05D003334 ORTHO05D004076 1.2e-08 62.4 37 73.0
RcHm_v2.0_Chr3g0493481 Rosa chinensis HOM05D003334 ORTHO05D004076 1.2e-08 62.4 37 73.0
Sabra09G0124600 Salix brachista HOM05D003334 ORTHO05D004076 1.2e-08 62.4 37 73.0
TWI15G0949 Tripterygium wilfordii HOM05D003334 ORTHO05D004076 1.2e-08 62.4 34 82.4
ATR0743G002 Amborella trichopoda HOM05D003334 ORTHO05D004076 1.6e-08 62.0 34 79.4
BcaC09g47814 Brassica carinata HOM05D003334 ORTHO05D004076 1.6e-08 62.0 36 77.8
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 1.6e-08 62.0 36 77.8
BolC1t05722H Brassica oleracea HOM05D003334 ORTHO05D004076 1.6e-08 62.0 36 77.8
DCAR_018748 Daucus carota HOM05D003334 ORTHO05D004076 1.6e-08 62.0 37 73.0
Eucgr.B01376 Eucalyptus grandis HOM05D003334 ORTHO05D004076 1.6e-08 62.0 34 79.4
Eucgr.B01628 Eucalyptus grandis HOM05D003334 ORTHO05D004076 1.6e-08 62.0 34 79.4
FvH4_4g11950 Fragaria vesca HOM05D003334 ORTHO05D004076 1.6e-08 62.0 34 79.4
FAN07G2734 Fragaria x ananassa HOM05D003334 ORTHO05D004076 1.6e-08 62.0 34 79.4
FAN12G4063 Fragaria x ananassa HOM05D003334 ORTHO05D004076 1.6e-08 62.0 34 79.4
FAN17G0794 Fragaria x ananassa HOM05D003334 ORTHO05D004076 1.6e-08 62.0 34 79.4
FAN22G0185 Fragaria x ananassa HOM05D003334 ORTHO05D004076 1.6e-08 62.0 34 79.4
Hma1.2p1_0123F.1_g058080 Hydrangea macrophylla HOM05D003334 ORTHO05D004076 1.6e-08 62.0 34 79.4
MBI07_g42069_MAGBIO Magnolia biondii HOM05D003334 ORTHO05D004076 1.6e-08 62.0 34 79.4
Os12g0540900 Oryza sativa ssp. japonica HOM05D003334 ORTHO05D004076 1.6e-08 62.0 37 75.7
PGR119G1638 Punica granatum HOM05D003334 ORTHO05D004076 1.6e-08 62.0 34 79.4
BolC3t16362H Brassica oleracea HOM05D003334 ORTHO05D004076 2.0e-08 61.6 32 84.4
Dinv27617 Davidia involucrata HOM05D003334 ORTHO05D004076 2.0e-08 61.6 34 79.4
Nitab4.5_0006136g0020 Nicotiana tabacum HOM05D003334 ORTHO05D004076 2.0e-08 61.6 34 79.4
Nitab4.5_0009273g0030 Nicotiana tabacum HOM05D003334 ORTHO05D004076 2.0e-08 61.6 34 79.4
PSO063G6945 Papaver somniferum HOM05D003334 ORTHO05D004076 2.0e-08 61.6 34 76.5
PSO170G1996 Papaver somniferum HOM05D003334 ORTHO05D004076 2.0e-08 61.6 34 76.5
Peaxi162Scf00213g01416 Petunia axillaris HOM05D003334 ORTHO05D004076 2.0e-08 61.6 34 79.4
Pp3c2_27540 Physcomitrium patens HOM05D003334 ORTHO05D004076 2.0e-08 61.6 34 76.5
Rhsim12G0003500 Rhododendron simsii HOM05D003334 ORTHO05D004076 2.0e-08 61.6 34 76.5
vmacro00932 Vaccinium macrocarpon HOM05D003334 ORTHO05D004076 2.0e-08 61.6 34 76.5
Zm00001eb054210 Zea mays HOM05D003334 ORTHO05D004076 2.0e-08 61.6 37 70.3
Actinidia29400 Actinidia chinensis HOM05D003334 ORTHO05D004076 2.7e-08 61.2 34 76.5
Aa31LG5G20570 Aethionema arabicum HOM05D003334 ORTHO05D004076 2.7e-08 61.2 34 79.4
CAN.G195.16 Capsicum annuum HOM05D003334 ORTHO05D004076 2.7e-08 61.2 34 76.5
Cre12.g522350 Chlamydomonas reinhardtii HOM05D003334 ORTHO05D004076 2.7e-08 61.2 34 76.5
ClCG09G011880 Citrullus lanatus HOM05D003334 ORTHO05D004076 2.7e-08 61.2 34 76.5
COL.COLO4_25317 Corchorus olitorius HOM05D003334 ORTHO05D004076 2.7e-08 61.2 34 76.5
MELO3C016671.2 Cucumis melo HOM05D003334 ORTHO05D004076 2.7e-08 61.2 34 76.5
CsaV3_5G014480 Cucumis sativus L. HOM05D003334 ORTHO05D004076 2.7e-08 61.2 34 76.5
Dinv04743 Davidia involucrata HOM05D003334 ORTHO05D004076 2.7e-08 61.2 34 76.5
Duzib170G0367 Durio zibethinus HOM05D003334 ORTHO05D004076 2.7e-08 61.2 34 76.5
ECA238G1984 Erigeron canadensis HOM05D003334 ORTHO05D004076 2.7e-08 61.2 37 73.0
Migut.E01397 Erythranthe guttata HOM05D003334 ORTHO05D004076 2.7e-08 61.2 37 73.0
Gohir.A09G104500 Gossypium hirsutum HOM05D003334 ORTHO05D004076 2.7e-08 61.2 34 76.5
Gohir.D09G101200 Gossypium hirsutum HOM05D003334 ORTHO05D004076 2.7e-08 61.2 34 76.5
Gorai.006G118600 Gossypium raimondii HOM05D003334 ORTHO05D004076 2.7e-08 61.2 34 76.5
Manes.12G077800 Manihot esculenta HOM05D003334 ORTHO05D004076 2.7e-08 61.2 34 76.5
Oeu028097.1 Olea europaea HOM05D003334 ORTHO05D004076 2.7e-08 61.2 37 73.0
SalBow8G4285 Salvia bowleyana HOM05D003334 ORTHO05D004076 2.7e-08 61.2 37 73.0
Sed0014785 Sechium edule HOM05D003334 ORTHO05D004076 2.7e-08 61.2 34 76.5
Sed0023632 Sechium edule HOM05D003334 ORTHO05D004076 2.7e-08 61.2 34 76.5
Solyc08g074410.4 Solanum lycopersicum HOM05D003334 ORTHO05D004076 2.7e-08 61.2 34 76.5
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 2.7e-08 61.2 34 76.5
PGSC0003DMG400029565 Solanum tuberosum HOM05D003334 ORTHO05D004076 2.7e-08 61.2 34 76.5
SGA_v2.0_scaffold269G46296 Striga asiatica HOM05D003334 ORTHO05D004076 2.7e-08 61.2 37 73.0
SGA_v2.0_scaffold447G51751 Striga asiatica HOM05D003334 ORTHO05D004076 2.7e-08 61.2 37 73.0
Thecc.09G264900 Theobroma cacao HOM05D003334 ORTHO05D004076 2.7e-08 61.2 34 76.5
CARHR060040 Cardamine hirsuta HOM05D003334 ORTHO05D004076 3.5e-08 60.8 34 73.5
Thhalv10004344m.g Eutrema salsugineum HOM05D003334 ORTHO05D004076 3.5e-08 60.8 34 79.4
Lj3g0011249 Lotus japonicus HOM05D003334 ORTHO05D004076 3.5e-08 60.8 36 72.2
Oeu044972.2 Olea europaea HOM05D003334 ORTHO05D004076 3.5e-08 60.8 37 73.0
SEGI_21996 Sequoiadendron giganteum HOM05D003334 ORTHO05D004076 3.5e-08 60.8 37 70.3
unitig_32.g11639 Utricularia gibba HOM05D003334 ORTHO05D004076 3.5e-08 60.8 37 70.3
HPP92_011708 Vanilla planifolia HOM05D003334 ORTHO05D004076 3.5e-08 60.8 34 73.5
CiPaw.07G196900 Carya illinoinensis HOM05D003334 ORTHO05D004076 4.5e-08 60.5 37 70.3
MD04G1236500 Malus domestica HOM05D003334 ORTHO05D004076 4.5e-08 60.5 37 70.3
MD12G1255800 Malus domestica HOM05D003334 ORTHO05D004076 4.5e-08 60.5 37 70.3
QL01p002114 Quercus lobata HOM05D003334 ORTHO05D004076 4.5e-08 60.5 37 70.3
RcHm_v2.0_Chr7g0219221 Rosa chinensis HOM05D003334 ORTHO05D004076 4.5e-08 60.5 37 70.3
THA.LOC104802839 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 4.5e-08 60.5 34 76.5
CANSAT54G0453 Cannabis sativa HOM05D003334 ORTHO05D004076 5.9e-08 60.1 34 73.5
Haze_07729 Corylus avellana HOM05D003334 ORTHO05D004076 5.9e-08 60.1 34 76.5
Duzib168G1687 Durio zibethinus HOM05D003334 ORTHO05D004076 5.9e-08 60.1 34 73.5
GSVIVG01020576001 Vitis vinifera HOM05D003334 ORTHO05D004076 5.9e-08 60.1 34 73.5
Cfa013451 Carpinus fangiana HOM05D003334 ORTHO05D004076 7.7e-08 59.7 34 73.5
Nitab4.5_0003036g0010 Nicotiana tabacum HOM05D003334 ORTHO05D004076 7.7e-08 59.7 34 76.5
Oeu028126.2 Olea europaea HOM05D003334 ORTHO05D004076 7.7e-08 59.7 38 73.7
SMO143G0103 Selaginella moellendorffii HOM05D003334 ORTHO05D004076 7.7e-08 59.7 33 75.8
THA.LOC104821663 Tarenaya hassleriana HOM05D003334 ORTHO05D004076 7.7e-08 59.7 34 76.5
BcaC09g48536 Brassica carinata HOM05D003334 ORTHO05D004076 1.0e-07 59.3 32 81.2
CBR_g37637 Chara braunii HOM05D003334 ORTHO05D004076 1.0e-07 59.3 34 73.5
Sc06g0005180 Simmondsia chinensis HOM05D003334 ORTHO05D004076 1.0e-07 59.3 34 73.5
Aqoxy7G03650 Aquilegia oxysepala HOM05D003334 ORTHO05D004076 1.3e-07 58.9 34 70.6
MSTRG.11832 Avicennia marina HOM05D003334 ORTHO05D004076 1.3e-07 58.9 37 67.6
Oeu028438.1 Olea europaea HOM05D003334 ORTHO05D004076 1.3e-07 58.9 37 70.3
SHI16564 Sapria himalayana HOM05D003334 ORTHO05D004076 1.3e-07 58.9 37 67.6
Peaxi162Scf00020g00242 Petunia axillaris HOM05D003334 ORTHO05D004076 1.7e-07 58.5 37 64.9
Atru.chr5.3183 Acer truncatum HOM05D003334 ORTHO05D004076 2.9e-07 57.8 32 78.1
Ah.15g091810 Amaranthus hybridus HOM05D003334 ORTHO05D004076 2.9e-07 57.8 34 73.5
EL10Ac4g09810 Beta vulgaris HOM05D003334 ORTHO05D004076 2.9e-07 57.8 34 73.5
AUR62005286 Chenopodium quinoa HOM05D003334 ORTHO05D004076 3.8e-07 57.4 34 73.5
Hund21749 Selenicereus undatus HOM05D003334 ORTHO05D004076 3.8e-07 57.4 34 73.5
Mapoly0053s0020 Marchantia polymorpha HOM05D003334 ORTHO05D004076 5.0e-07 57.0 37 64.9
Aa31LG5G15020 Aethionema arabicum HOM05D003334 ORTHO05D004076 1.5e-06 55.5 32 71.9
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 1.5e-06 55.5 36 66.7
PRCOL_00004976 Prasinoderma coloniale HOM05D003334 ORTHO05D004076 4.2e-06 53.9 34 67.6
A07p01960 Brassica napus HOM05D003334 ORTHO05D004076 5.5e-06 53.5 33 69.7
C07p04090 Brassica napus HOM05D003334 ORTHO05D004076 5.5e-06 53.5 33 69.7
BolC7t40804H Brassica oleracea HOM05D003334 ORTHO05D004076 5.5e-06 53.5 33 69.7
BraA07t27995Z Brassica rapa HOM05D003334 ORTHO05D004076 5.5e-06 53.5 33 69.7
SMO352G0088 Selaginella moellendorffii HOM05D003334 ORTHO05D004076 5.5e-06 53.5 37 59.5


User provided reference genes

Program Settings