Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p39410 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1214.9 606 100.0
BolC1t03890H Brassica oleracea HOM05D003979 ORTHO05D005530 0.0e+00 1214.9 606 100.0
BraA01t03222Z Brassica rapa HOM05D003979 ORTHO05D005530 0.0e+00 1192.9 608 98.5
BcaB04g20393 Brassica carinata HOM05D003979 ORTHO05D005530 0.0e+00 1189.1 609 98.2
A01p30940 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1177.5 610 97.2
A07p08130 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1174.8 612 96.2
BraA07t28596Z Brassica rapa HOM05D003979 ORTHO05D005530 0.0e+00 1174.8 612 96.2
Sp3g22010 Schrenkiella parvula HOM05D003979 ORTHO05D005530 0.0e+00 1172.5 616 96.1
BcaC06g35668 Brassica carinata HOM05D003979 ORTHO05D005530 0.0e+00 1170.2 612 96.1
C07p12270 Brassica napus HOM05D003979 ORTHO05D005530 0.0e+00 1170.2 612 96.1
BcaB06g26604 Brassica carinata HOM05D003979 ORTHO05D005530 0.0e+00 1169.5 613 96.1
BolC7t41694H Brassica oleracea HOM05D003979 ORTHO05D005530 0.0e+00 1159.1 626 93.8
Thhalv10002451m.g Eutrema salsugineum HOM05D003979 ORTHO05D005530 0.0e+00 1157.1 607 95.4
Carub.0003s2458 Capsella rubella HOM05D003979 ORTHO05D005530 0.0e+00 1144.8 612 94.4
AL3G39610 Arabidopsis lyrata HOM05D003979 ORTHO05D005530 0.0e+00 1144.4 612 94.1
CARHR100330 Cardamine hirsuta HOM05D003979 ORTHO05D005530 0.0e+00 1136.3 607 93.9
AT3G23940 Arabidopsis thaliana HOM05D003979 ORTHO05D005530 0.0e+00 1135.9 612 93.5
Aa31LG8G10930 Aethionema arabicum HOM05D003979 ORTHO05D005530 0.0e+00 1112.1 617 90.8
THA.LOC104804817 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 0.0e+00 1085.5 610 89.0
THA.LOC104808724 Tarenaya hassleriana HOM05D003979 ORTHO05D005530 2.4e-310 1068.1 616 87.2
Ciclev10004565m.g Citrus clementina HOM05D003979 ORTHO05D005530 5.7e-296 1020.4 614 83.1
Potri.003G176600 Populus trichocarpa HOM05D003979 ORTHO05D005530 2.8e-295 1018.1 606 83.0
Duzib212G0229 Durio zibethinus HOM05D003979 ORTHO05D005530 2.0e-293 1011.9 610 82.3
Thecc.04G210300 Theobroma cacao HOM05D003979 ORTHO05D005530 5.6e-291 1003.8 610 82.0
Potri.001G051700 Populus trichocarpa HOM05D003979 ORTHO05D005530 1.6e-290 1002.3 612 81.4
CiPaw.02G067900 Carya illinoinensis HOM05D003979 ORTHO05D005530 2.1e-290 1001.9 614 81.9
Cfa014896 Carpinus fangiana HOM05D003979 ORTHO05D005530 3.6e-290 1001.1 616 82.0
Gohir.A02G024400 Gossypium hirsutum HOM05D003979 ORTHO05D005530 8.0e-290 1000.0 607 81.4
Gohir.D02G031700 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.0e-289 999.6 607 81.2
Dinv38268 Davidia involucrata HOM05D003979 ORTHO05D005530 3.1e-289 998.0 617 81.2
HanXRQChr14g0435331 Helianthus annuus HOM05D003979 ORTHO05D005530 3.1e-289 998.0 609 82.1
COL.COLO4_20310 Corchorus olitorius HOM05D003979 ORTHO05D005530 6.8e-289 996.9 611 81.3
Gorai.005G035200 Gossypium raimondii HOM05D003979 ORTHO05D005530 8.9e-289 996.5 607 81.1
Cpa.g.sc59.101 Carica papaya HOM05D003979 ORTHO05D005530 2.0e-288 995.3 597 83.1
CiPaw.01G125500 Carya illinoinensis HOM05D003979 ORTHO05D005530 2.0e-288 995.3 618 80.6
Duzib151G0303 Durio zibethinus HOM05D003979 ORTHO05D005530 3.4e-288 994.6 609 81.0
CSS0040719 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 4.4e-288 994.2 618 79.4
AUR62020350 Chenopodium quinoa HOM05D003979 ORTHO05D005530 5.8e-288 993.8 592 83.1
Cc03_g07310 Coffea canephora HOM05D003979 ORTHO05D005530 5.8e-288 993.8 600 81.8
Sabra01G0036200 Salix brachista HOM05D003979 ORTHO05D005530 7.5e-288 993.4 612 80.9
ClCG05G003530 Citrullus lanatus HOM05D003979 ORTHO05D005530 1.7e-287 992.3 614 81.6
CSS0027237 Camellia sinensis var. sinensis HOM05D003979 ORTHO05D005530 2.2e-287 991.9 618 79.3
Solyc12g043020.2 Solanum lycopersicum HOM05D003979 ORTHO05D005530 2.9e-287 991.5 619 80.9
Actinidia34623 Actinidia chinensis HOM05D003979 ORTHO05D005530 4.9e-287 990.7 622 80.5
MSTRG.24631 Avicennia marina HOM05D003979 ORTHO05D005530 8.3e-287 989.9 596 81.2
Actinidia35951 Actinidia chinensis HOM05D003979 ORTHO05D005530 1.1e-286 989.6 594 83.3
AUR62015873 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.4e-286 989.2 558 86.2
Hma1.2p1_0691F.1_g204250 Hydrangea macrophylla HOM05D003979 ORTHO05D005530 1.4e-286 989.2 599 82.3
Prupe.1G003100 Prunus persica HOM05D003979 ORTHO05D005530 2.4e-286 988.4 618 81.1
Sopen12g022260 Solanum pennellii HOM05D003979 ORTHO05D005530 2.4e-286 988.4 598 82.8
Migut.N00344 Erythranthe guttata HOM05D003979 ORTHO05D005530 3.2e-286 988.0 613 80.6
Sed0009934 Sechium edule HOM05D003979 ORTHO05D005530 1.2e-285 986.1 614 80.9
Lsat_1_v5_gn_6_63381 Lactuca sativa HOM05D003979 ORTHO05D005530 1.6e-285 985.7 559 85.7
Medtr2g089340 Medicago truncatula HOM05D003979 ORTHO05D005530 2.0e-285 985.3 607 80.6
Phvul.006G152700 Phaseolus vulgaris HOM05D003979 ORTHO05D005530 2.0e-285 985.3 606 80.0
PGSC0003DMG400019163 Solanum tuberosum HOM05D003979 ORTHO05D005530 2.0e-285 985.3 614 80.6
HanXRQChr02g0059571 Helianthus annuus HOM05D003979 ORTHO05D005530 2.7e-285 984.9 608 80.6
Duzib268G0146 Durio zibethinus HOM05D003979 ORTHO05D005530 4.6e-285 984.2 610 80.7
Solyc05g053540.3 Solanum lycopersicum HOM05D003979 ORTHO05D005530 7.8e-285 983.4 614 80.5
MELO3C006331.2 Cucumis melo HOM05D003979 ORTHO05D005530 1.0e-284 983.0 622 80.1
Manes.15G050825 Manihot esculenta HOM05D003979 ORTHO05D005530 1.3e-284 982.6 572 85.0
Hund24848 Selenicereus undatus HOM05D003979 ORTHO05D005530 2.3e-284 981.9 587 81.6
Glyma.13G207900 Glycine max HOM05D003979 ORTHO05D005530 3.0e-284 981.5 606 79.9
Cc02_g25590 Coffea canephora HOM05D003979 ORTHO05D005530 5.0e-284 980.7 615 79.3
MD04G1003600 Malus domestica HOM05D003979 ORTHO05D005530 6.6e-284 980.3 602 81.2
Sopen05g032060 Solanum pennellii HOM05D003979 ORTHO05D005530 8.6e-284 979.9 614 80.3
CsaV3_3G011200 Cucumis sativus L. HOM05D003979 ORTHO05D005530 1.1e-283 979.5 608 80.4
VMungo0540G1831 Vigna mungo HOM05D003979 ORTHO05D005530 1.9e-283 978.8 606 80.4
CANSAT78G1204 Cannabis sativa HOM05D003979 ORTHO05D005530 2.5e-283 978.4 597 81.6
PGR031G0232 Punica granatum HOM05D003979 ORTHO05D005530 2.5e-283 978.4 606 80.9
TAR365G0531 Trochodendron aralioides HOM05D003979 ORTHO05D005530 3.3e-283 978.0 567 84.7
arahy.Tifrunner.gnm1.ann1.ZGF32Z Arachis hypogaea HOM05D003979 ORTHO05D005530 5.6e-283 977.2 607 80.7
RcHm_v2.0_Chr1g0328531 Rosa chinensis HOM05D003979 ORTHO05D005530 9.5e-283 976.5 561 84.5
Haze_11573 Corylus avellana HOM05D003979 ORTHO05D005530 1.2e-282 976.1 653 77.3
ECA233G3228 Erigeron canadensis HOM05D003979 ORTHO05D005530 1.6e-282 975.7 609 80.1
Ca_00636_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 3.6e-282 974.5 607 79.9
Ca_29705_v3 Cicer arietinum L. HOM05D003979 ORTHO05D005530 3.6e-282 974.5 607 79.9
FvH4_7g04190 Fragaria vesca HOM05D003979 ORTHO05D005530 8.0e-282 973.4 561 84.0
FAN06G4745 Fragaria x ananassa HOM05D003979 ORTHO05D005530 8.0e-282 973.4 561 84.0
Peaxi162Scf00073g02029 Petunia axillaris HOM05D003979 ORTHO05D005530 1.4e-281 972.6 616 79.4
PSO063G3024 Papaver somniferum HOM05D003979 ORTHO05D005530 1.8e-281 972.2 591 81.4
PSO017G0981 Papaver somniferum HOM05D003979 ORTHO05D005530 3.1e-281 971.5 584 82.0
Nn1g03146 Nelumbo nucifera HOM05D003979 ORTHO05D005530 4.0e-281 971.1 558 85.1
QL07p012465 Quercus lobata HOM05D003979 ORTHO05D005530 5.2e-281 970.7 604 80.5
FAN01G2046 Fragaria x ananassa HOM05D003979 ORTHO05D005530 8.9e-281 969.9 590 80.7
Psat1g182280 Pisum sativum HOM05D003979 ORTHO05D005530 3.4e-280 968.0 606 78.9
FAN10G0585 Fragaria x ananassa HOM05D003979 ORTHO05D005530 1.3e-279 966.1 561 83.4
Sc25g0005860 Simmondsia chinensis HOM05D003979 ORTHO05D005530 2.2e-279 965.3 582 81.1
EL10Ac4g07703 Beta vulgaris HOM05D003979 ORTHO05D005530 2.9e-279 964.9 612 78.4
Lj6g0025731 Lotus japonicus HOM05D003979 ORTHO05D005530 2.9e-279 964.9 606 78.7
Lalb_Chr18g0056121 Lupinus albus HOM05D003979 ORTHO05D005530 6.4e-279 963.8 611 78.2
DCAR_031519 Daucus carota HOM05D003979 ORTHO05D005530 1.1e-278 963.0 595 80.8
ATR0787G169 Amborella trichopoda HOM05D003979 ORTHO05D005530 1.9e-278 962.2 587 80.6
CAN.G765.2 Capsicum annuum HOM05D003979 ORTHO05D005530 3.2e-278 961.4 608 78.6
Ah.04g166150 Amaranthus hybridus HOM05D003979 ORTHO05D005530 1.2e-277 959.5 583 80.8
Aqoxy2G03779 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 2.3e-276 955.3 586 80.9
Aqoxy5G02610 Aquilegia oxysepala HOM05D003979 ORTHO05D005530 2.1e-274 948.7 601 78.9
TAR624G0299 Trochodendron aralioides HOM05D003979 ORTHO05D005530 3.6e-274 948.0 560 83.2
Zm00001eb175970 Zea mays HOM05D003979 ORTHO05D005530 5.2e-273 944.1 563 81.7
MBI07_g21060_MAGBIO Magnolia biondii HOM05D003979 ORTHO05D005530 8.9e-273 943.3 656 73.6
Os08g0559600 Oryza sativa ssp. japonica HOM05D003979 ORTHO05D005530 8.9e-273 943.3 563 81.9
Zm00001eb039310 Zea mays HOM05D003979 ORTHO05D005530 1.5e-272 942.6 563 81.5
Oeu022336.1 Olea europaea HOM05D003979 ORTHO05D005530 4.4e-272 941.0 620 77.7
RhsimUnG0135800 Rhododendron simsii HOM05D003979 ORTHO05D005530 4.9e-271 937.6 641 74.4
Nitab4.5_0001769g0010 Nicotiana tabacum HOM05D003979 ORTHO05D005530 6.4e-271 937.2 626 75.7
arahy.Tifrunner.gnm1.ann1.NX1XST Arachis hypogaea HOM05D003979 ORTHO05D005530 3.0e-268 928.3 587 79.7
GSVIVG01029073001 Vitis vinifera HOM05D003979 ORTHO05D005530 7.3e-267 923.7 525 85.1
AUR62017196 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.2e-266 922.9 574 78.4
Pp3c11_18700 Physcomitrium patens HOM05D003979 ORTHO05D005530 1.2e-266 922.9 591 75.8
RhsimUnG0180900 Rhododendron simsii HOM05D003979 ORTHO05D005530 1.2e-264 916.4 685 69.6
Gohir.D10G144500 Gossypium hirsutum HOM05D003979 ORTHO05D005530 1.5e-264 916.0 558 82.1
Mapoly0044s0128 Marchantia polymorpha HOM05D003979 ORTHO05D005530 1.7e-263 912.5 586 75.4
SMO361G0245 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 8.4e-263 910.2 594 75.9
Hund11465 Selenicereus undatus HOM05D003979 ORTHO05D005530 1.4e-262 909.4 561 78.3
CBR_g16971 Chara braunii HOM05D003979 ORTHO05D005530 1.3e-260 902.9 600 74.2
Peaxi162Scf00536g00915 Petunia axillaris HOM05D003979 ORTHO05D005530 7.6e-256 887.1 571 78.5
AUR62010687 Chenopodium quinoa HOM05D003979 ORTHO05D005530 1.2e-253 879.8 558 77.1
Nitab4.5_0001066g0080 Nicotiana tabacum HOM05D003979 ORTHO05D005530 5.1e-252 874.4 622 72.3
SGA_v2.0_scaffold31G12595 Striga asiatica HOM05D003979 ORTHO05D005530 3.3e-251 871.7 537 80.3
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 5.4e-246 854.4 630 71.0
HPP92_025762 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.1e-245 852.4 525 79.0
Gorai.011G161400 Gossypium raimondii HOM05D003979 ORTHO05D005530 9.0e-241 837.0 614 70.7
TWI09G0393 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 1.4e-238 829.7 624 68.4
Cre03.g206600 Chlamydomonas reinhardtii HOM05D003979 ORTHO05D005530 3.9e-236 821.6 591 68.2
MCO11G076 Micromonas commoda HOM05D003979 ORTHO05D005530 3.2e-230 802.0 557 69.3
SMO361G0819 Selaginella moellendorffii HOM05D003979 ORTHO05D005530 2.2e-223 779.2 490 78.8
AagrBONN_evm.TU.Sc2ySwM_228.3337 Anthoceros agrestis HOM05D003979 ORTHO05D005530 9.4e-222 773.9 479 78.9
unitig_899.g15534 Utricularia gibba HOM05D003979 ORTHO05D005530 1.8e-217 759.6 490 77.6
QL06p023475 Quercus lobata HOM05D003979 ORTHO05D005530 8.5e-215 750.7 482 79.9
PRCOL_00005867 Prasinoderma coloniale HOM05D003979 ORTHO05D005530 4.2e-214 748.4 549 66.5
Gohir.A10G121600 Gossypium hirsutum HOM05D003979 ORTHO05D005530 4.1e-209 731.9 426 83.6
CDE04G1626 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 8.5e-207 724.2 433 81.5
HPP92_025735 Vanilla planifolia HOM05D003979 ORTHO05D005530 2.1e-205 719.5 490 74.9
SEGI_04002 Sequoiadendron giganteum HOM05D003979 ORTHO05D005530 6.7e-204 714.5 433 79.9
Cfa024863 Carpinus fangiana HOM05D003979 ORTHO05D005530 1.1e-203 713.8 561 62.2
HPP92_025731 Vanilla planifolia HOM05D003979 ORTHO05D005530 7.2e-198 694.5 429 79.3
vmacro00507 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 4.5e-184 648.7 403 80.4
Atru.chr4.1774 Acer truncatum HOM05D003979 ORTHO05D005530 5.6e-174 615.1 433 73.2
Cfa023757 Carpinus fangiana HOM05D003979 ORTHO05D005530 2.6e-171 606.3 575 54.1
Eucgr.H02826 Eucalyptus grandis HOM05D003979 ORTHO05D005530 1.8e-156 557.0 313 87.5
QL07p030448 Quercus lobata HOM05D003979 ORTHO05D000106 3.5e-144 516.2 386 71.0
Eucgr.C02488 Eucalyptus grandis HOM05D003979 ORTHO05D005530 5.3e-124 449.1 340 70.3
HanXRQChr14g0435341 Helianthus annuus HOM05D003979 ORTHO05D005530 9.6e-118 428.3 279 77.8
Manes.03G150102 Manihot esculenta HOM05D003979 ORTHO05D005530 2.1e-104 384.0 277 67.9
TPR.G30672 Trifolium pratense HOM05D003979 ORTHO05D005530 6.1e-88 329.3 216 74.5
CAN.G12.22 Capsicum annuum HOM05D003979 ORTHO05D005530 9.8e-78 295.4 206 73.8
Cfa023448 Carpinus fangiana HOM05D003979 ORTHO05D123299 7.7e-75 285.8 557 33.6
vmacro00506 Vaccinium macrocarpon HOM05D003979 ORTHO05D005530 1.9e-73 281.2 151 88.7
Eucgr.H02825 Eucalyptus grandis HOM05D003979 ORTHO05D015566 5.0e-66 256.5 150 82.0
Cfa020039 Carpinus fangiana HOM05D003979 ORTHO05D015566 4.6e-59 233.4 131 84.7
Duzib268G0265 Durio zibethinus HOM05D003979 ORTHO05D015566 2.3e-55 221.1 133 75.2
QL07p012436 Quercus lobata HOM05D003979 ORTHO05D005530 3.1e-55 220.7 126 84.9
THA.LOC104809102 Tarenaya hassleriana HOM05D003979 ORTHO05D049433 4.9e-53 213.4 116 93.1
Oeu022341.1 Olea europaea HOM05D003979 ORTHO05D049433 6.6e-50 203.0 178 61.2
Lsat_1_v5_gn_4_162440 Lactuca sativa HOM05D003979 ORTHO05D015566 8.6e-50 202.6 144 72.2
PGSC0003DMG400028636 Solanum tuberosum HOM05D003979 ORTHO05D015566 2.5e-49 201.1 115 83.5
QL06p023466 Quercus lobata HOM05D003979 ORTHO05D015566 7.3e-49 199.5 114 80.7
Gorai.005G140500 Gossypium raimondii HOM05D003979 ORTHO05D005530 2.8e-48 197.6 140 70.7
Gohir.D02G124900 Gossypium hirsutum HOM05D003979 ORTHO05D005530 6.8e-47 193.0 105 84.8
Eucgr.C02482 Eucalyptus grandis HOM05D003979 ORTHO05D015566 7.8e-43 179.5 115 73.9
Oeu006718.2 Olea europaea HOM05D003979 ORTHO05D005530 3.6e-40 170.6 250 45.2
CDE04G0146 Ceratophyllum demersum HOM05D003979 ORTHO05D005530 6.2e-40 169.9 146 61.6
TPR.G30661 Trifolium pratense HOM05D003979 ORTHO05D005530 4.4e-38 163.7 214 48.6
TWI36G0080 Tripterygium wilfordii HOM05D003979 ORTHO05D005530 2.3e-34 151.4 112 72.3
Lsat_1_v5_gn_5_133441 Lactuca sativa HOM05D003979 ORTHO05D015566 4.6e-27 127.1 116 60.3
CAN.G12.21 Capsicum annuum HOM05D003979 ORTHO05D015566 5.6e-25 120.2 61 91.8
CAN.G12.20 Capsicum annuum HOM05D003979 ORTHO05D015566 9.0e-23 112.8 70 74.3
TPR.G35859 Trifolium pratense HOM05D003979 ORTHO05D015566 2.4e-20 104.8 56 89.3
HPP92_025734 Vanilla planifolia HOM05D003979 ORTHO05D005530 1.8e-18 98.6 91 62.6
SMO361G0618 Selaginella moellendorffii HOM05D003979 ORTHO05D015566 1.3e-16 92.4 212 33.0
Aqoxy226s001 Aquilegia oxysepala HOM05D004107 ORTHO05D004738 4.8e-16 90.5 183 31.7
TAR362G1054 Trochodendron aralioides HOM05D000447 ORTHO05D000315 4.9e-13 80.5 67 55.2
unitig_899.g15535 Utricularia gibba HOM05D003979 ORTHO05D005530 6.4e-13 80.1 85 56.5


User provided reference genes

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