Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p36140 Brassica napus HOM05D014577 ORTHO05D016763 1.0e-93 346.7 169 100.0
C06p18670 Brassica napus HOM05D014577 ORTHO05D016763 1.0e-93 346.7 169 100.0
C01p36180 Brassica napus HOM05D014577 ORTHO05D016763 1.5e-92 342.8 169 99.4
BolC1t03572H Brassica oleracea HOM05D014577 ORTHO05D016763 1.5e-76 289.7 140 100.0
A09p36240 Brassica napus HOM05D014577 ORTHO05D016763 2.6e-73 278.9 140 95.7
BcaC09g49465 Brassica carinata HOM05D014577 ORTHO05D016763 2.9e-64 248.8 118 100.0
BolC1t03577H Brassica oleracea HOM05D014577 ORTHO05D016763 1.4e-61 240.0 113 100.0
BraA09t39150Z Brassica rapa HOM05D014577 ORTHO05D016763 4.9e-27 125.2 67 92.5
BNapus_Darmor_BZH_scaffold_188p00140 Brassica napus HOM05D014577 ORTHO05D016763 9.2e-26 120.9 70 88.6
BcaC09g49464 Brassica carinata HOM05D014577 ORTHO05D016763 8.9e-13 77.8 40 100.0
BcaB05g22769 Brassica carinata HOM05D000234 ORTHO05D001258 4.6e-09 65.5 51 60.8
BNapus_Darmor_BZH_scaffold_38p01070 Brassica napus HOM05D000234 ORTHO05D001258 4.6e-09 65.5 51 60.8
BolC2t07102H Brassica oleracea HOM05D000234 ORTHO05D001258 4.6e-09 65.5 51 60.8
BraA02t05621Z Brassica rapa HOM05D000234 ORTHO05D001258 4.6e-09 65.5 51 60.8
AL6G32580 Arabidopsis lyrata HOM05D000234 ORTHO05D001258 6.0e-09 65.1 45 64.4
BcaC03g13836 Brassica carinata HOM05D000234 ORTHO05D001258 6.0e-09 65.1 51 60.8
Aa31LG1G13630 Aethionema arabicum HOM05D000234 ORTHO05D001258 7.8e-09 64.7 51 58.8
Carub.0006s1933 Capsella rubella HOM05D000234 ORTHO05D001258 3.0e-08 62.8 45 62.2
Sp6g23510 Schrenkiella parvula HOM05D000234 ORTHO05D001258 5.1e-08 62.0 45 62.2
AT5G21150 Arabidopsis thaliana HOM05D000234 ORTHO05D001258 1.5e-07 60.5 51 52.9
A10p18930 Brassica napus HOM05D000234 ORTHO05D001258 1.5e-07 60.5 51 54.9
BraA10t43970Z Brassica rapa HOM05D000234 ORTHO05D001258 1.5e-07 60.5 51 54.9
A10p19040 Brassica napus HOM05D000234 ORTHO05D001258 1.9e-07 60.1 51 54.9
C09p55050 Brassica napus HOM05D000234 ORTHO05D001258 3.3e-07 59.3 45 55.6
C09p56650 Brassica napus HOM05D000234 ORTHO05D001258 3.3e-07 59.3 45 55.6
BolC9t58368H Brassica oleracea HOM05D000234 ORTHO05D001258 3.3e-07 59.3 45 55.6
AL6G32770 Arabidopsis lyrata HOM05D000234 ORTHO05D001258 4.3e-07 58.9 51 52.9
Thhalv10001902m.g Eutrema salsugineum HOM05D000234 ORTHO05D001258 4.3e-07 58.9 51 54.9
Hund01351 Selenicereus undatus HOM05D000234 ORTHO05D001258 4.3e-07 58.9 46 58.7
TPR.G27312 Trifolium pratense HOM05D000234 ORTHO05D001258 4.3e-07 58.9 46 56.5
BcaC04g19498 Brassica carinata HOM05D000234 ORTHO05D001258 5.6e-07 58.5 45 55.6
PSO541G2228 Papaver somniferum HOM05D000234 ORTHO05D001258 5.6e-07 58.5 46 58.7
PSO675G0189 Papaver somniferum HOM05D000234 ORTHO05D001258 5.6e-07 58.5 46 58.7
arahy.Tifrunner.gnm1.ann1.FWIM6U Arachis hypogaea HOM05D000234 ORTHO05D001258 7.3e-07 58.2 56 48.2
A10p18940 Brassica napus HOM05D000234 ORTHO05D001258 7.3e-07 58.2 51 52.9
CARHR191720 Cardamine hirsuta HOM05D000234 ORTHO05D001258 7.3e-07 58.2 51 52.9
CDE05G3280 Ceratophyllum demersum HOM05D000234 ORTHO05D001258 7.3e-07 58.2 51 51.0
Thhalv10012624m.g Eutrema salsugineum HOM05D000234 ORTHO05D001258 7.3e-07 58.2 51 56.9
Sc15g0007310 Simmondsia chinensis HOM05D000234 ORTHO05D001258 7.3e-07 58.2 46 58.7
Lj1C248T1 Lonicera japonica HOM05D000234 ORTHO05D001258 9.5e-07 57.8 46 58.7
Lj1C272T5 Lonicera japonica HOM05D000234 ORTHO05D001258 9.5e-07 57.8 46 58.7
Lalb_Chr04g0249631 Lupinus albus HOM05D000234 ORTHO05D001258 9.5e-07 57.8 56 48.2
Lalb_Chr17g0347571 Lupinus albus HOM05D000234 ORTHO05D001258 9.5e-07 57.8 56 48.2
Peaxi162Scf00220g00110 Petunia axillaris HOM05D000234 ORTHO05D001258 9.5e-07 57.8 42 59.5
VMungo0540G1957 Vigna mungo HOM05D000234 ORTHO05D001258 9.5e-07 57.8 46 56.5
arahy.Tifrunner.gnm1.ann1.60DDY8 Arachis hypogaea HOM05D000234 ORTHO05D001258 1.2e-06 57.4 56 46.4
arahy.Tifrunner.gnm1.ann1.B15C0D Arachis hypogaea HOM05D000234 ORTHO05D001258 1.2e-06 57.4 56 46.4
Ca_06159_v3 Cicer arietinum L. HOM05D000234 ORTHO05D001258 1.2e-06 57.4 46 56.5
SGA_v2.0_scaffold29G12168 Striga asiatica HOM05D000234 ORTHO05D001258 1.2e-06 57.4 46 56.5
Migut.N01871 Erythranthe guttata HOM05D000234 ORTHO05D001258 1.6e-06 57.0 53 52.8
Medtr5g087890 Medicago truncatula HOM05D000234 ORTHO05D001258 1.6e-06 57.0 46 54.3
Os04g0151800 Oryza sativa ssp. japonica HOM05D000234 ORTHO05D001258 1.6e-06 57.0 46 54.3
PSO339G0407 Papaver somniferum HOM05D000234 ORTHO05D001258 1.6e-06 57.0 46 56.5
Prupe.2G056600 Prunus persica HOM05D000234 ORTHO05D001258 1.6e-06 57.0 46 58.7
Atru.chr3.2883 Acer truncatum HOM05D000234 ORTHO05D001258 2.1e-06 56.6 51 51.0
BcaB08g36476 Brassica carinata HOM05D000234 ORTHO05D001258 2.1e-06 56.6 51 51.0
BcaB08g36478 Brassica carinata HOM05D000234 ORTHO05D001258 2.1e-06 56.6 51 52.9
BolC9t58352H Brassica oleracea HOM05D000234 ORTHO05D001258 2.1e-06 56.6 42 59.5
CSS0028151 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D001258 2.1e-06 56.6 46 56.5
CDE11G1164 Ceratophyllum demersum HOM05D000234 ORTHO05D001258 2.1e-06 56.6 51 49.0
MD03G1164000 Malus domestica HOM05D000234 ORTHO05D001258 2.1e-06 56.6 46 58.7
Prupe.6G154800 Prunus persica HOM05D000234 ORTHO05D001258 2.1e-06 56.6 46 58.7
Rhsim01G0201700 Rhododendron simsii HOM05D002527 ORTHO05D002865 2.1e-06 56.6 62 45.2
Sed0026403 Sechium edule HOM05D000234 ORTHO05D001258 2.1e-06 56.6 46 56.5
Zm00001eb297760 Zea mays HOM05D000234 ORTHO05D001258 2.1e-06 56.6 46 56.5
Cpa.g.sc26.59 Carica papaya HOM05D000234 ORTHO05D001258 2.8e-06 56.2 46 56.5
Ca_16219_v3 Cicer arietinum L. HOM05D000234 ORTHO05D001258 2.8e-06 56.2 46 56.5
Ciclev10014186m.g Citrus clementina HOM05D000234 ORTHO05D001258 2.8e-06 56.2 46 54.3
Dinv24001 Davidia involucrata HOM05D000234 ORTHO05D001258 2.8e-06 56.2 46 56.5
Hma1.2p1_0765F.1_g215080 Hydrangea macrophylla HOM05D000234 ORTHO05D001258 2.8e-06 56.2 46 54.3
MBI13_g00565_MAGBIO Magnolia biondii HOM05D000234 ORTHO05D001258 2.8e-06 56.2 37 64.9
MD07G1052200 Malus domestica HOM05D000234 ORTHO05D001258 2.8e-06 56.2 46 56.5
Phvul.008G206500 Phaseolus vulgaris HOM05D000234 ORTHO05D001258 2.8e-06 56.2 46 54.3
Sabra16G0124600 Salix brachista HOM05D000234 ORTHO05D001258 2.8e-06 56.2 51 51.0
Sed0016540 Sechium edule HOM05D000234 ORTHO05D001258 2.8e-06 56.2 46 56.5
Sed0026464 Sechium edule HOM05D000234 ORTHO05D001258 2.8e-06 56.2 46 56.5
Hund08088 Selenicereus undatus HOM05D000234 ORTHO05D001258 2.8e-06 56.2 46 54.3
TAR633G1821 Trochodendron aralioides HOM05D000234 ORTHO05D001258 2.8e-06 56.2 46 54.3
BcaB02g10065 Brassica carinata HOM05D000234 ORTHO05D001258 3.6e-06 55.8 46 54.3
BcaC02g10853 Brassica carinata HOM05D000234 ORTHO05D001258 3.6e-06 55.8 46 54.3
A07p17960 Brassica napus HOM05D000234 ORTHO05D001258 3.6e-06 55.8 46 54.3
C04p24480 Brassica napus HOM05D000234 ORTHO05D001258 3.6e-06 55.8 46 54.3
BolC4t23947H Brassica oleracea HOM05D000234 ORTHO05D001258 3.6e-06 55.8 46 54.3
BraA07t29514Z Brassica rapa HOM05D000234 ORTHO05D001258 3.6e-06 55.8 46 54.3
CSS0000297 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D001258 3.6e-06 55.8 46 56.5
CSS0039674 Camellia sinensis var. sinensis HOM05D000234 ORTHO05D001258 3.6e-06 55.8 46 56.5
Carub.0006s1946 Capsella rubella HOM05D000234 ORTHO05D001258 3.6e-06 55.8 51 49.0
CiPaw.13G121000 Carya illinoinensis HOM05D000234 ORTHO05D001258 3.6e-06 55.8 46 56.5
Eucgr.B03780 Eucalyptus grandis HOM05D000234 ORTHO05D001258 3.6e-06 55.8 46 56.5
Glyma.20G052500 Glycine max HOM05D000234 ORTHO05D001258 3.6e-06 55.8 46 54.3
Lj9C704G17 Lonicera japonica HOM05D000234 ORTHO05D001258 3.6e-06 55.8 44 54.5
Manes.18G121900 Manihot esculenta HOM05D000234 ORTHO05D001258 3.6e-06 55.8 46 54.3
Nitab4.5_0002915g0040 Nicotiana tabacum HOM05D000234 ORTHO05D001258 3.6e-06 55.8 46 58.7
Potri.001G219700 Populus trichocarpa HOM05D000234 ORTHO05D001258 3.6e-06 55.8 46 56.5
Actinidia12279 Actinidia chinensis HOM05D003250 ORTHO05D003678 4.7e-06 55.5 46 54.3
AUR62018467 Chenopodium quinoa HOM05D000234 ORTHO05D001258 4.7e-06 55.5 53 52.8
DCAR_018978 Daucus carota HOM05D000234 ORTHO05D001258 4.7e-06 55.5 134 35.8
Duzib170G1140 Durio zibethinus HOM05D000234 ORTHO05D001258 4.7e-06 55.5 51 51.0
Glyma.02G274900 Glycine max HOM05D000234 ORTHO05D001258 4.7e-06 55.5 46 54.3
Glyma.14G041100 Glycine max HOM05D000234 ORTHO05D001258 4.7e-06 55.5 46 54.3
Gohir.A08G196800 Gossypium hirsutum HOM05D000234 ORTHO05D001258 4.7e-06 55.5 51 51.0
Gohir.D08G214000 Gossypium hirsutum HOM05D000234 ORTHO05D001258 4.7e-06 55.5 51 51.0
Gorai.004G228100 Gossypium raimondii HOM05D000234 ORTHO05D001258 4.7e-06 55.5 51 51.0
MD11G1182100 Malus domestica HOM05D000234 ORTHO05D001258 4.7e-06 55.5 46 56.5
Medtr3g078647 Medicago truncatula HOM05D000234 ORTHO05D001258 4.7e-06 55.5 46 54.3
Medtr5g087870 Medicago truncatula HOM05D000234 ORTHO05D001258 4.7e-06 55.5 46 54.3
Nitab4.5_0000428g0010 Nicotiana tabacum HOM05D000234 ORTHO05D001258 4.7e-06 55.5 46 56.5
PGSC0003DMG400027002 Solanum tuberosum HOM05D000234 ORTHO05D001258 4.7e-06 55.5 139 34.5
THA.LOC104799583 Tarenaya hassleriana HOM05D000234 ORTHO05D001258 4.7e-06 55.5 51 51.0
HPP92_006665 Vanilla planifolia HOM05D000234 ORTHO05D001258 4.7e-06 55.5 47 57.4
Carub.0004s0753 Capsella rubella HOM05D000234 ORTHO05D001258 6.2e-06 55.1 46 54.3
Lj2C935T1 Lonicera japonica HOM05D000234 ORTHO05D001258 6.2e-06 55.1 133 34.6
Phvul.008G206600 Phaseolus vulgaris HOM05D000234 ORTHO05D001258 6.2e-06 55.1 46 54.3
Potri.006G025900 Populus trichocarpa HOM05D000234 ORTHO05D001258 6.2e-06 55.1 37 64.9
Potri.016G024200 Populus trichocarpa HOM05D000234 ORTHO05D001258 6.2e-06 55.1 37 64.9
Sabra06G0019100 Salix brachista HOM05D000234 ORTHO05D001258 6.2e-06 55.1 37 64.9
Sabra16G0030100 Salix brachista HOM05D000234 ORTHO05D001258 6.2e-06 55.1 37 64.9
Sp6g23370 Schrenkiella parvula HOM05D000234 ORTHO05D001258 6.2e-06 55.1 46 58.7
THA.LOC104800485 Tarenaya hassleriana HOM05D000234 ORTHO05D001258 6.2e-06 55.1 51 51.0
Thecc.09G338500 Theobroma cacao HOM05D000234 ORTHO05D001258 6.2e-06 55.1 46 54.3
TWI79G0571 Tripterygium wilfordii HOM05D000234 ORTHO05D001258 6.2e-06 55.1 46 56.5
vmacro14287 Vaccinium macrocarpon HOM05D000234 ORTHO05D001258 6.2e-06 55.1 134 35.1
GSVIVG01037488001 Vitis vinifera HOM05D000234 ORTHO05D001258 6.2e-06 55.1 46 54.3
CANSAT54G2498 Cannabis sativa HOM05D000234 ORTHO05D001258 8.1e-06 54.7 46 56.5
CAN.G714.11 Capsicum annuum HOM05D000234 ORTHO05D001258 8.1e-06 54.7 46 54.3
ClCG02G024220 Citrullus lanatus HOM05D000234 ORTHO05D001258 8.1e-06 54.7 44 56.8
Cc01_g06780 Coffea canephora HOM05D000234 ORTHO05D001258 8.1e-06 54.7 46 54.3
MELO3C014706.2 Cucumis melo HOM05D000234 ORTHO05D001258 8.1e-06 54.7 44 56.8
CsaV3_4G017350 Cucumis sativus L. HOM05D000234 ORTHO05D001258 8.1e-06 54.7 44 56.8
FvH4_3g27260 Fragaria vesca HOM05D000234 ORTHO05D001258 8.1e-06 54.7 46 56.5
FAN11G2923 Fragaria x ananassa HOM05D000234 ORTHO05D001258 8.1e-06 54.7 46 56.5
FAN16G3417 Fragaria x ananassa HOM05D000234 ORTHO05D001258 8.1e-06 54.7 46 56.5
LjContig00564g0023857 Lotus japonicus HOM05D000234 ORTHO05D001258 8.1e-06 54.7 46 54.3
Phvul.006G021200 Phaseolus vulgaris HOM05D000234 ORTHO05D001258 8.1e-06 54.7 46 52.2
Psat5g110040 Pisum sativum HOM05D000234 ORTHO05D001258 8.1e-06 54.7 46 52.2
QL01p020174 Quercus lobata HOM05D000234 ORTHO05D001258 8.1e-06 54.7 44 54.5
Rhsim01G0196200 Rhododendron simsii HOM05D000234 ORTHO05D001258 8.1e-06 54.7 134 35.1
RcHm_v2.0_Chr5g0049901 Rosa chinensis HOM05D000234 ORTHO05D001258 8.1e-06 54.7 46 56.5
Sabra08G0006300 Salix brachista HOM05D000234 ORTHO05D001258 8.1e-06 54.7 46 56.5
TPR.G22223 Trifolium pratense HOM05D000234 ORTHO05D001258 8.1e-06 54.7 46 54.3
TPR.G24744 Trifolium pratense HOM05D000234 ORTHO05D001258 8.1e-06 54.7 46 54.3
GSVIVG01025868001 Vitis vinifera HOM05D000234 ORTHO05D001258 8.1e-06 54.7 46 54.3


User provided reference genes

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