Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p32170 Brassica napus HOM05D006589 ORTHO05D008350 0.0e+00 1372.8 676 100.0
BcaC09g49867 Brassica carinata HOM05D006589 ORTHO05D008350 0.0e+00 1370.1 676 99.7
BolC1t03137H Brassica oleracea HOM05D006589 ORTHO05D008350 0.0e+00 1363.6 676 99.3
BraA01t02452Z Brassica rapa HOM05D006589 ORTHO05D008350 0.0e+00 1350.1 676 98.1
A01p25610 Brassica napus HOM05D006589 ORTHO05D008350 0.0e+00 1347.8 676 97.9
BcaB05g23014 Brassica carinata HOM05D006589 ORTHO05D008350 0.0e+00 1332.8 676 96.7
Sp5g13530 Schrenkiella parvula HOM05D006589 ORTHO05D008350 0.0e+00 1292.7 676 93.2
CARHR157250 Cardamine hirsuta HOM05D006589 ORTHO05D008350 0.0e+00 1280.0 679 92.6
Thhalv10010171m.g Eutrema salsugineum HOM05D006589 ORTHO05D008350 0.0e+00 1276.5 678 93.1
AL5G27930 Arabidopsis lyrata HOM05D006589 ORTHO05D008350 0.0e+00 1268.4 678 91.7
Carub.0005s1468 Capsella rubella HOM05D006589 ORTHO05D008350 0.0e+00 1258.8 678 90.4
AT3G48500 Arabidopsis thaliana HOM05D006589 ORTHO05D008350 0.0e+00 1216.1 676 88.8
Aa31LG4G17110 Aethionema arabicum HOM05D006589 ORTHO05D008350 0.0e+00 1176.0 678 84.2
THA.LOC104798952 Tarenaya hassleriana HOM05D006589 ORTHO05D008350 0.0e+00 1141.7 673 82.0
Thecc.03G124600 Theobroma cacao HOM05D006589 ORTHO05D008350 1.5e-289 999.2 680 73.1
Gohir.D07G057600 Gossypium hirsutum HOM05D006589 ORTHO05D008350 1.9e-287 992.3 683 73.1
Gohir.A07G053200 Gossypium hirsutum HOM05D006589 ORTHO05D008350 7.1e-287 990.3 683 72.0
COL.COLO4_16830 Corchorus olitorius HOM05D006589 ORTHO05D008350 1.3e-285 986.1 681 73.7
Gorai.001G061100 Gossypium raimondii HOM05D006589 ORTHO05D008350 1.3e-285 986.1 621 76.7
Eucgr.B00143 Eucalyptus grandis HOM05D006589 ORTHO05D008350 2.6e-281 971.8 641 73.5
Potri.015G091700 Populus trichocarpa HOM05D006589 ORTHO05D008350 2.6e-281 971.8 669 72.0
Sabra15G0113500 Salix brachista HOM05D006589 ORTHO05D008350 1.9e-279 965.7 667 71.2
PGR083G2113 Punica granatum HOM05D006589 ORTHO05D008350 2.4e-279 965.3 678 70.8
Atru.chr9.1023 Acer truncatum HOM05D006589 ORTHO05D008350 5.4e-279 964.1 629 73.8
Cfa018872 Carpinus fangiana HOM05D006589 ORTHO05D008350 3.5e-278 961.4 680 71.0
Haze_07256 Corylus avellana HOM05D006589 ORTHO05D008350 1.0e-277 959.9 686 70.8
Dinv04849 Davidia involucrata HOM05D006589 ORTHO05D008350 1.3e-277 959.5 684 71.1
CSS0007976 Camellia sinensis var. sinensis HOM05D006589 ORTHO05D008350 2.5e-276 955.3 677 70.6
Ciclev10019152m.g Citrus clementina HOM05D006589 ORTHO05D008350 2.8e-275 951.8 681 71.1
Manes.14G054400 Manihot esculenta HOM05D006589 ORTHO05D008350 9.9e-273 943.3 682 69.6
CsaV3_1G000740 Cucumis sativus L. HOM05D006589 ORTHO05D008350 9.3e-271 936.8 669 69.5
Actinidia36794 Actinidia chinensis HOM05D006589 ORTHO05D008350 6.0e-270 934.1 685 69.1
CANSAT80G0035 Cannabis sativa HOM05D006589 ORTHO05D008350 6.0e-270 934.1 684 68.9
TAR622G1334 Trochodendron aralioides HOM05D006589 ORTHO05D008350 8.7e-269 930.2 632 72.8
TWI23G0930 Tripterygium wilfordii HOM05D006589 ORTHO05D008350 4.3e-268 927.9 671 68.4
QL10p004744 Quercus lobata HOM05D006589 ORTHO05D008350 5.6e-268 927.5 626 72.7
Cpa.g.sc4.99 Carica papaya HOM05D006589 ORTHO05D008350 1.6e-267 926.0 676 68.3
FvH4_5g07670 Fragaria vesca HOM05D006589 ORTHO05D008350 2.8e-267 925.2 671 68.1
Nitab4.5_0005327g0070 Nicotiana tabacum HOM05D006589 ORTHO05D008350 2.8e-267 925.2 681 69.3
Duzib205G1155 Durio zibethinus HOM05D006589 ORTHO05D008350 8.2e-267 923.7 684 69.2
Glyma.04G193700 Glycine max HOM05D006589 ORTHO05D008350 8.2e-267 923.7 678 69.2
Prupe.5G155500 Prunus persica HOM05D006589 ORTHO05D008350 1.4e-266 922.9 663 68.9
Ca_15262_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 1.2e-265 919.8 619 72.7
Nitab4.5_0001664g0100 Nicotiana tabacum HOM05D006589 ORTHO05D008350 1.2e-265 919.8 681 69.2
FAN18G3475 Fragaria x ananassa HOM05D006589 ORTHO05D008350 1.5e-265 919.5 671 67.8
Nn4g22414 Nelumbo nucifera HOM05D006589 ORTHO05D008350 1.5e-265 919.5 675 68.9
RcHm_v2.0_Chr7g0190801 Rosa chinensis HOM05D006589 ORTHO05D008350 1.5e-265 919.5 639 70.7
EL10As4g23464 Beta vulgaris HOM05D006589 ORTHO05D008350 2.0e-265 919.1 633 70.3
Glyma.06G172400 Glycine max HOM05D006589 ORTHO05D008350 7.6e-265 917.1 614 72.5
MD14G1162400 Malus domestica HOM05D006589 ORTHO05D008350 7.6e-265 917.1 666 69.2
Peaxi162Scf00089g00326 Petunia axillaris HOM05D006589 ORTHO05D008350 2.2e-264 915.6 677 70.2
FAN04G1748 Fragaria x ananassa HOM05D006589 ORTHO05D008350 2.9e-264 915.2 627 71.0
FAN13G0522 Fragaria x ananassa HOM05D006589 ORTHO05D008350 2.9e-264 915.2 615 72.0
Psat5g140160 Pisum sativum HOM05D006589 ORTHO05D008350 1.1e-263 913.3 682 66.4
Medtr3g075050 Medicago truncatula HOM05D006589 ORTHO05D008350 1.4e-263 912.9 676 67.5
PSO782G1921 Papaver somniferum HOM05D006589 ORTHO05D008350 2.7e-262 908.7 669 68.5
FAN08G0518 Fragaria x ananassa HOM05D006589 ORTHO05D008350 3.5e-262 908.3 630 69.8
arahy.Tifrunner.gnm1.ann1.RTQA9M Arachis hypogaea HOM05D006589 ORTHO05D008350 4.6e-262 907.9 608 71.9
arahy.Tifrunner.gnm1.ann1.DGQ22E Arachis hypogaea HOM05D006589 ORTHO05D008350 6.0e-262 907.5 608 71.5
Migut.I00491 Erythranthe guttata HOM05D006589 ORTHO05D008350 6.7e-261 904.0 680 67.9
Sc22g0004160 Simmondsia chinensis HOM05D006589 ORTHO05D008350 5.7e-260 901.0 649 70.7
PSO063G3222 Papaver somniferum HOM05D006589 ORTHO05D008350 7.4e-260 900.6 678 68.3
SalBow5G0933 Salvia bowleyana HOM05D006589 ORTHO05D008350 1.8e-258 896.0 654 69.4
Aqoxy5G03523 Aquilegia oxysepala HOM05D006589 ORTHO05D008350 3.1e-258 895.2 630 69.8
SalBow5G1883 Salvia bowleyana HOM05D006589 ORTHO05D008350 4.1e-258 894.8 654 69.0
Sed0022036 Sechium edule HOM05D006589 ORTHO05D008350 1.5e-257 892.9 607 71.2
PGSC0003DMG400015251 Solanum tuberosum HOM05D006589 ORTHO05D008350 2.0e-257 892.5 630 71.7
Sopen03g030220 Solanum pennellii HOM05D006589 ORTHO05D008350 1.3e-256 889.8 630 71.7
Solyc03g111050.3 Solanum lycopersicum HOM05D006589 ORTHO05D008350 1.7e-256 889.4 630 71.7
TPR.G26148 Trifolium pratense HOM05D006589 ORTHO05D008350 4.2e-255 884.8 690 64.6
Lsat_1_v5_gn_5_13320 Lactuca sativa HOM05D006589 ORTHO05D008350 9.4e-255 883.6 637 67.8
Lalb_Chr11g0069681 Lupinus albus HOM05D006589 ORTHO05D008350 2.1e-254 882.5 671 67.5
DCAR_007473 Daucus carota HOM05D006589 ORTHO05D008350 2.7e-254 882.1 646 67.5
Lj1g0010015 Lotus japonicus HOM05D006589 ORTHO05D008350 6.1e-254 880.9 679 66.0
Phvul.009G168200 Phaseolus vulgaris HOM05D006589 ORTHO05D008350 8.8e-253 877.1 684 65.4
Hund02417 Selenicereus undatus HOM05D006589 ORTHO05D008350 2.0e-252 875.9 586 71.5
ClCG06G017720 Citrullus lanatus HOM05D006589 ORTHO05D008350 7.4e-252 874.0 669 66.7
Lj5A99T74 Lonicera japonica HOM05D006589 ORTHO05D008350 3.1e-250 868.6 686 65.9
HanXRQChr05g0158451 Helianthus annuus HOM05D006589 ORTHO05D008350 2.6e-249 865.5 667 64.9
ECA246G1540 Erigeron canadensis HOM05D006589 ORTHO05D008350 3.9e-245 851.7 626 66.6
CDE02G2664 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 1.7e-240 836.3 630 66.3
Rhsim12G0172500 Rhododendron simsii HOM05D006589 ORTHO05D008350 4.1e-234 815.1 634 65.1
GSVIVG01008490001 Vitis vinifera HOM05D006589 ORTHO05D008350 1.2e-228 797.0 555 72.8
MBI08_g33782_MAGBIO Magnolia biondii HOM05D006589 ORTHO05D008350 5.7e-228 794.7 658 62.9
AUR62025863 Chenopodium quinoa HOM05D006589 ORTHO05D008350 1.1e-226 790.4 648 62.0
HPP92_003572 Vanilla planifolia HOM05D006589 ORTHO05D008350 1.1e-226 790.4 585 64.8
Cc04_g10160 Coffea canephora HOM05D006589 ORTHO05D008350 1.4e-226 790.0 555 72.3
MELO3C026221.2 Cucumis melo HOM05D006589 ORTHO05D008350 4.1e-226 788.5 797 54.2
AUR62029828 Chenopodium quinoa HOM05D006589 ORTHO05D008350 1.5e-223 780.0 555 69.2
CAN.G352.47 Capsicum annuum HOM05D006589 ORTHO05D008350 5.5e-223 778.1 556 71.0
vmacro16654 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 8.8e-221 770.8 776 54.9
Ah.02g115320 Amaranthus hybridus HOM05D006589 ORTHO05D008350 2.8e-214 749.2 670 59.6
SGA_v2.0_scaffold161G37820 Striga asiatica HOM05D006589 ORTHO05D008350 1.4e-210 736.9 597 64.5
Zm00001eb365570 Zea mays HOM05D006589 ORTHO05D008350 8.9e-197 691.0 574 59.2
CiPaw.12G036500 Carya illinoinensis HOM05D006589 ORTHO05D008350 3.9e-192 675.6 467 70.2
vmacro16714 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 8.6e-184 647.9 787 48.7
Oeu006374.4 Olea europaea HOM05D006589 ORTHO05D000550 1.1e-162 577.8 431 65.9
Os01g0901900 Oryza sativa ssp. japonica HOM05D006589 ORTHO05D008350 8.2e-142 508.4 452 57.1
unitig_0.g1070 Utricularia gibba HOM05D006589 ORTHO05D008350 2.8e-134 483.4 371 65.5
Mapoly0120s0021 Marchantia polymorpha HOM05D006589 ORTHO05D008350 2.5e-122 443.7 531 46.9
Pp3c18_13570 Physcomitrium patens HOM05D006589 ORTHO05D008350 3.8e-115 419.9 555 45.0
Ca_15265_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 4.2e-106 389.8 284 69.0
ATR0060G001 Amborella trichopoda HOM05D006589 ORTHO05D008350 6.1e-105 386.0 345 58.0
FAN21G1369 Fragaria x ananassa HOM05D006589 ORTHO05D008350 1.4e-96 358.2 326 58.6
FAN21G3066 Fragaria x ananassa HOM05D006589 ORTHO05D008350 1.4e-96 358.2 326 58.6
unitig_0.g1069 Utricularia gibba HOM05D006589 ORTHO05D008350 1.8e-96 357.8 294 62.2
SMO356G0597 Selaginella moellendorffii HOM05D006589 ORTHO05D008350 1.3e-83 315.1 561 36.7
ATR0686G112 Amborella trichopoda HOM05D006589 ORTHO05D008350 7.1e-77 292.7 241 59.8
RcHm_v2.0_Chr1g0380381 Rosa chinensis HOM05D006589 ORTHO05D008350 4.7e-73 280.0 235 62.1
CBR_g31403 Chara braunii HOM05D006589 ORTHO05D008350 6.0e-60 236.5 570 30.7
SEGI_40144 Sequoiadendron giganteum HOM05D006589 ORTHO05D008350 1.0e-51 209.1 256 45.7
HPP92_003575 Vanilla planifolia HOM05D006589 ORTHO05D008350 1.3e-51 208.8 246 51.2
CDE09G0508 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 5.3e-40 170.2 184 49.5
arahy.Tifrunner.gnm1.ann1.85RMBE Arachis hypogaea HOM05D006589 ORTHO05D008350 6.3e-33 146.7 142 53.5
arahy.Tifrunner.gnm1.ann1.Q1JBFY Arachis hypogaea HOM05D006589 ORTHO05D008350 1.1e-32 146.0 124 56.5
FAN25G1587 Fragaria x ananassa HOM05D006589 ORTHO05D008350 1.5e-31 142.1 140 53.6
MCO14G318 Micromonas commoda HOM05D006589 ORTHO05D008350 2.8e-09 68.2 120 36.7


User provided reference genes

Program Settings