Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p31410 Brassica napus HOM05D011861 ORTHO05D032435 4.2e-130 468.0 229 100.0
BolC1t03077H Brassica oleracea HOM05D011861 ORTHO05D032435 4.3e-119 431.4 212 99.1
BcaC09g49909 Brassica carinata HOM05D011861 ORTHO05D032435 8.3e-30 134.8 212 42.0
AL5G10320 Arabidopsis lyrata HOM05D001456 ORTHO05D001571 3.2e-21 106.3 223 36.8
BcaB08g35996 Brassica carinata HOM05D011861 ORTHO05D027663 2.1e-20 103.6 84 63.1
C09p48930 Brassica napus HOM05D011861 ORTHO05D032220 4.6e-20 102.4 120 50.8
BcaC04g20003 Brassica carinata HOM05D011861 ORTHO05D032220 1.3e-19 100.9 112 53.6
BcaB08g35994 Brassica carinata HOM05D011861 ORTHO05D011036 3.3e-18 96.3 74 67.6
C02p25960 Brassica napus HOM05D001636 ORTHO05D009134 8.1e-17 91.7 208 32.2
CARHR113000 Cardamine hirsuta HOM05D001456 ORTHO05D011036 4.4e-15 85.9 73 64.4
C05p29980 Brassica napus HOM05D001636 ORTHO05D027512 5.8e-15 85.5 204 34.3
BolC5t31733H Brassica oleracea HOM05D001636 ORTHO05D027512 5.8e-15 85.5 204 34.3
A03p51560 Brassica napus HOM05D001636 ORTHO05D009134 1.7e-14 84.0 207 32.4
C01p32090 Brassica napus HOM05D011861 ORTHO05D023701 2.2e-14 83.6 47 74.5
BNapus_Darmor_BZH_scaffold_188p00110 Brassica napus HOM05D001636 ORTHO05D018456 2.9e-14 83.2 319 26.0
Carub.0001s4175 Capsella rubella HOM05D001636 ORTHO05D013186 2.9e-14 83.2 276 29.3
C01p32130 Brassica napus HOM05D011861 ORTHO05D023701 3.8e-14 82.8 66 57.6
C04p00350 Brassica napus HOM05D001636 ORTHO05D018456 3.8e-14 82.8 328 25.6
C09p48910 Brassica napus HOM05D011861 ORTHO05D027663 3.8e-14 82.8 95 51.6
BolC4t21677H Brassica oleracea HOM05D001636 ORTHO05D018456 3.8e-14 82.8 328 25.6
Carub.0005s2203 Capsella rubella HOM05D001636 ORTHO05D013186 6.4e-14 82.0 288 27.8
BolSC55t61225H Brassica oleracea HOM05D001636 ORTHO05D018456 8.4e-14 81.6 319 25.7
BolC9t57740H Brassica oleracea HOM05D011861 ORTHO05D027663 1.1e-13 81.3 73 58.9
BolC9t57743H Brassica oleracea HOM05D011861 ORTHO05D032220 1.1e-13 81.3 62 61.3
Carub.0008s0675 Capsella rubella HOM05D001636 ORTHO05D013186 1.1e-13 81.3 285 27.0
C06p41230 Brassica napus HOM05D001636 ORTHO05D009134 2.4e-13 80.1 200 29.5
Thhalv10003587m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 2.4e-13 80.1 218 30.7
BolC1t03141H Brassica oleracea HOM05D011861 ORTHO05D023701 3.2e-13 79.7 49 69.4
BcaC08g46311 Brassica carinata HOM05D001636 ORTHO05D009134 4.2e-13 79.3 202 31.2
Carub.0007s3604 Capsella rubella HOM05D001456 ORTHO05D023701 5.4e-13 79.0 71 62.0
BraA06t25930Z Brassica rapa HOM05D001636 ORTHO05D009134 9.3e-13 78.2 198 27.8
BcaC02g12798 Brassica carinata HOM05D001636 ORTHO05D018456 2.1e-12 77.0 312 25.3
BcaC02g09873 Brassica carinata HOM05D001456 ORTHO05D032772 1.1e-10 71.2 77 51.9
BolC4t25235H Brassica oleracea HOM05D001456 ORTHO05D011036 1.1e-10 71.2 77 51.9
Thhalv10005934m.g Eutrema salsugineum HOM05D001636 ORTHO05D009134 2.5e-10 70.1 305 25.9
BraA05t18996Z Brassica rapa HOM05D001636 ORTHO05D018456 3.3e-10 69.7 80 47.5
CARHR179320 Cardamine hirsuta HOM05D001456 ORTHO05D011036 4.3e-10 69.3 75 45.3
BcaB06g29167 Brassica carinata HOM05D001636 ORTHO05D009134 5.6e-10 68.9 76 50.0
BcaC02g11205 Brassica carinata HOM05D001636 ORTHO05D009134 5.6e-10 68.9 215 27.0
Carub.0007s3606 Capsella rubella HOM05D001456 ORTHO05D011036 1.3e-09 67.8 77 46.8
Carub.0002s0629 Capsella rubella HOM05D001636 ORTHO05D013186 2.1e-09 67.0 79 45.6
C07p50280 Brassica napus HOM05D001636 ORTHO05D009134 2.8e-09 66.6 256 28.9
AL3G38360 Arabidopsis lyrata HOM05D001636 ORTHO05D018456 4.8e-09 65.9 82 46.3
AT5G39640 Arabidopsis thaliana HOM05D001636 ORTHO05D023701 4.8e-09 65.9 64 57.8
BcaNung03075 Brassica carinata HOM05D001636 ORTHO05D009134 6.2e-09 65.5 256 28.9
BolC7t45530H Brassica oleracea HOM05D001636 ORTHO05D009134 6.2e-09 65.5 256 28.9
Thhalv10005803m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 1.4e-08 64.3 116 36.2
Thhalv10017769m.g Eutrema salsugineum HOM05D001456 ORTHO05D011036 1.4e-08 64.3 72 45.8
AL1G45330 Arabidopsis lyrata HOM05D001456 ORTHO05D011036 1.8e-08 63.9 102 35.3
Thhalv10017693m.g Eutrema salsugineum HOM05D001456 ORTHO05D011317 2.4e-08 63.5 78 42.3
AT5G61180 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 3.1e-08 63.2 93 41.9
Carub.0008s0155 Capsella rubella HOM05D001636 ORTHO05D009134 3.1e-08 63.2 70 47.1
Sc05g0000120 Simmondsia chinensis HOM05D001456 ORTHO05D002799 5.3e-08 62.4 74 45.9
BcaNung01309 Brassica carinata HOM05D001456 ORTHO05D031996 6.9e-08 62.0 86 38.4
BolC1t00009H Brassica oleracea HOM05D001456 ORTHO05D031996 6.9e-08 62.0 86 38.4
AL1G16270 Arabidopsis lyrata HOM05D001456 ORTHO05D011036 9.0e-08 61.6 84 46.4
AL7G41400 Arabidopsis lyrata HOM05D008913 ORTHO05D011317 9.0e-08 61.6 80 43.8
A03p46800 Brassica napus HOM05D001456 ORTHO05D002799 9.0e-08 61.6 76 44.7
C01p00030 Brassica napus HOM05D001456 ORTHO05D031996 9.0e-08 61.6 85 38.8
BraA03t13802Z Brassica rapa HOM05D001456 ORTHO05D027445 9.0e-08 61.6 76 44.7
BolC7t45436H Brassica oleracea HOM05D001636 ORTHO05D009134 1.2e-07 61.2 256 25.8
Sp5g22790 Schrenkiella parvula HOM05D001456 ORTHO05D002799 1.2e-07 61.2 85 43.5
AL1G14200 Arabidopsis lyrata HOM05D001636 ORTHO05D013186 1.5e-07 60.8 84 41.7
AL1G17090 Arabidopsis lyrata HOM05D001456 ORTHO05D013186 1.5e-07 60.8 79 41.8
EL10Ac8g19630 Beta vulgaris HOM05D001456 ORTHO05D002799 1.5e-07 60.8 94 39.4
BcaB03g15112 Brassica carinata HOM05D001636 ORTHO05D009134 1.5e-07 60.8 198 26.8
BcaC06g33175 Brassica carinata HOM05D001456 ORTHO05D002799 1.5e-07 60.8 76 44.7
CARHR172550 Cardamine hirsuta HOM05D001456 ORTHO05D002799 1.5e-07 60.8 76 44.7
CARHR274930 Cardamine hirsuta HOM05D001456 ORTHO05D002799 2.0e-07 60.5 80 43.8
Thhalv10019735m.g Eutrema salsugineum HOM05D001456 ORTHO05D009134 2.0e-07 60.5 76 47.4
Oeu036643.2 Olea europaea HOM05D001456 ORTHO05D002799 2.6e-07 60.1 71 49.3
Prupe.3G003800 Prunus persica HOM05D001456 ORTHO05D002799 2.6e-07 60.1 92 38.0
THA.LOC104817439 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 2.6e-07 60.1 74 45.9
AT4G20480 Arabidopsis thaliana HOM05D001636 ORTHO05D018439 3.4e-07 59.7 66 50.0
BcaC06g33212 Brassica carinata HOM05D001456 ORTHO05D027445 3.4e-07 59.7 76 43.4
C07p44860 Brassica napus HOM05D001456 ORTHO05D027445 3.4e-07 59.7 76 43.4
BolC7t45010H Brassica oleracea HOM05D001456 ORTHO05D027445 3.4e-07 59.7 76 43.4
Carub.0007s3262 Capsella rubella HOM05D001636 ORTHO05D011036 3.4e-07 59.7 70 47.1
MBI18_g09644_MAGBIO Magnolia biondii HOM05D001456 ORTHO05D002799 3.4e-07 59.7 80 42.5
Sp5g01180 Schrenkiella parvula HOM05D001456 ORTHO05D002799 4.4e-07 59.3 94 39.4
BcaB04g19226 Brassica carinata HOM05D001636 ORTHO05D009134 5.8e-07 58.9 98 36.7
BcaC06g33211 Brassica carinata HOM05D001456 ORTHO05D002799 5.8e-07 58.9 76 43.4
BcaC07g40712 Brassica carinata HOM05D001456 ORTHO05D002799 5.8e-07 58.9 74 45.9
BcaNung02002 Brassica carinata HOM05D001636 ORTHO05D009134 5.8e-07 58.9 70 42.9
A06p35510 Brassica napus HOM05D001636 ORTHO05D009134 5.8e-07 58.9 70 42.9
C07p43040 Brassica napus HOM05D001636 ORTHO05D009134 5.8e-07 58.9 70 42.9
C07p44850 Brassica napus HOM05D001456 ORTHO05D002799 5.8e-07 58.9 76 43.4
C08p37150 Brassica napus HOM05D001456 ORTHO05D002799 5.8e-07 58.9 74 45.9
BolC7t44832H Brassica oleracea HOM05D001636 ORTHO05D009134 5.8e-07 58.9 70 42.9
BolC7t45008H Brassica oleracea HOM05D001456 ORTHO05D002799 5.8e-07 58.9 76 43.4
BolC8t51292H Brassica oleracea HOM05D001456 ORTHO05D002799 5.8e-07 58.9 74 45.9
BraA03t14241Z Brassica rapa HOM05D001636 ORTHO05D009134 5.8e-07 58.9 256 28.1
BraA06t26475Z Brassica rapa HOM05D001636 ORTHO05D009134 5.8e-07 58.9 70 42.9
THA.LOC104802123 Tarenaya hassleriana HOM05D001456 ORTHO05D002799 5.8e-07 58.9 76 44.7
VMungo1383G0246 Vigna mungo HOM05D001456 ORTHO05D002799 5.8e-07 58.9 74 45.9
C02p62340 Brassica napus HOM05D001636 ORTHO05D009134 7.6e-07 58.5 69 44.9
CARHR005160 Cardamine hirsuta HOM05D001456 ORTHO05D011036 7.6e-07 58.5 92 34.8
Ah.14g086290 Amaranthus hybridus HOM05D001456 ORTHO05D002799 9.9e-07 58.2 90 37.8
AL1G35600 Arabidopsis lyrata HOM05D001636 ORTHO05D013186 9.9e-07 58.2 76 40.8
AL5G23770 Arabidopsis lyrata HOM05D001456 ORTHO05D011036 9.9e-07 58.2 73 39.7
C03p60330 Brassica napus HOM05D001636 ORTHO05D009134 9.9e-07 58.2 74 43.2
BraA02t09188Z Brassica rapa HOM05D001636 ORTHO05D009134 9.9e-07 58.2 71 43.7
Carub.0007s3613 Capsella rubella HOM05D001636 ORTHO05D011036 9.9e-07 58.2 56 53.6
Migut.N00970 Erythranthe guttata HOM05D001456 ORTHO05D002799 9.9e-07 58.2 75 44.0
Oeu000099.1 Olea europaea HOM05D001456 ORTHO05D002799 9.9e-07 58.2 71 47.9
SalBow4G0536 Salvia bowleyana HOM05D001456 ORTHO05D002799 9.9e-07 58.2 88 42.0
SalBow4G1768 Salvia bowleyana HOM05D001456 ORTHO05D002799 9.9e-07 58.2 88 42.0
Sed0015340 Sechium edule HOM05D001456 ORTHO05D002799 9.9e-07 58.2 93 37.6
Sopen02g033570 Solanum pennellii HOM05D001456 ORTHO05D002799 9.9e-07 58.2 81 43.2
BcaC01g02551 Brassica carinata HOM05D001636 ORTHO05D009134 1.3e-06 57.8 95 38.9
BcaC02g12800 Brassica carinata HOM05D001636 ORTHO05D018456 1.3e-06 57.8 77 42.9
A09p54270 Brassica napus HOM05D001456 ORTHO05D002799 1.3e-06 57.8 101 39.6
C03p63560 Brassica napus HOM05D001636 ORTHO05D009134 1.3e-06 57.8 95 38.9
C07p48170 Brassica napus HOM05D001636 ORTHO05D009134 1.3e-06 57.8 74 43.2
C07p49280 Brassica napus HOM05D001636 ORTHO05D009134 1.3e-06 57.8 74 43.2
BolC7t45340H Brassica oleracea HOM05D001636 ORTHO05D009134 1.3e-06 57.8 74 43.2
BraA03t14586Z Brassica rapa HOM05D001636 ORTHO05D009134 1.3e-06 57.8 298 23.5
BraA09t40839Z Brassica rapa HOM05D001456 ORTHO05D002799 1.3e-06 57.8 101 39.6
Carub.0001s0454 Capsella rubella HOM05D001636 ORTHO05D013186 1.3e-06 57.8 91 37.4
CARHR000960 Cardamine hirsuta HOM05D001456 ORTHO05D018439 1.3e-06 57.8 70 47.1
CARHR175440 Cardamine hirsuta HOM05D001636 ORTHO05D009134 1.3e-06 57.8 75 42.7
CiPaw.07G124200 Carya illinoinensis HOM05D001456 ORTHO05D002799 1.3e-06 57.8 82 41.5
Dinv24508 Davidia involucrata HOM05D001456 ORTHO05D002799 1.3e-06 57.8 71 46.5
Solyc02g088860.2 Solanum lycopersicum HOM05D001456 ORTHO05D002799 1.3e-06 57.8 75 45.3
AL5G21850 Arabidopsis lyrata HOM05D001456 ORTHO05D011036 1.7e-06 57.4 103 33.0
BcaC01g02791 Brassica carinata HOM05D001636 ORTHO05D009134 1.7e-06 57.4 69 43.5
BcaC01g02793 Brassica carinata HOM05D001636 ORTHO05D009134 1.7e-06 57.4 69 43.5
C03p60230 Brassica napus HOM05D001636 ORTHO05D009134 1.7e-06 57.4 69 43.5
C03p60300 Brassica napus HOM05D001636 ORTHO05D009134 1.7e-06 57.4 69 43.5
BolC3t18292H Brassica oleracea HOM05D001636 ORTHO05D009134 1.7e-06 57.4 69 43.5
Thhalv10012128m.g Eutrema salsugineum HOM05D001456 ORTHO05D002799 1.7e-06 57.4 76 46.1
BcaB04g19904 Brassica carinata HOM05D001456 ORTHO05D002799 2.2e-06 57.0 76 43.4
BcaC03g14330 Brassica carinata HOM05D001636 ORTHO05D009134 2.2e-06 57.0 69 42.0
BcaC03g18165 Brassica carinata HOM05D001636 ORTHO05D009134 2.2e-06 57.0 104 37.5
BcaC03g18185 Brassica carinata HOM05D001636 ORTHO05D009134 2.2e-06 57.0 69 43.5
BcaC06g33506 Brassica carinata HOM05D001636 ORTHO05D009134 2.2e-06 57.0 69 44.9
C02p17550 Brassica napus HOM05D001636 ORTHO05D009134 2.2e-06 57.0 69 42.0
C02p62510 Brassica napus HOM05D001636 ORTHO05D009134 2.2e-06 57.0 69 43.5
Carub.0002s1385 Capsella rubella HOM05D001636 ORTHO05D009134 2.2e-06 57.0 80 38.8
Nitab4.5_0002485g0050 Nicotiana tabacum HOM05D001456 ORTHO05D002799 2.2e-06 57.0 71 45.1
AL1G10300 Arabidopsis lyrata HOM05D001636 ORTHO05D009134 2.9e-06 56.6 70 41.4
AL4G13470 Arabidopsis lyrata HOM05D001636 ORTHO05D011036 2.9e-06 56.6 68 47.1
AT3G62850 Arabidopsis thaliana HOM05D001636 ORTHO05D009134 2.9e-06 56.6 71 43.7
BcaB07g32631 Brassica carinata HOM05D013484 ORTHO05D094299 2.9e-06 56.6 73 39.7
BcaC04g23180 Brassica carinata HOM05D001636 ORTHO05D009134 2.9e-06 56.6 71 45.1
A02p42600 Brassica napus HOM05D001636 ORTHO05D009134 2.9e-06 56.6 69 43.5
C08p49410 Brassica napus HOM05D001456 ORTHO05D011036 2.9e-06 56.6 74 40.5
BolC3t18612H Brassica oleracea HOM05D001636 ORTHO05D009134 2.9e-06 56.6 69 44.9
BolC8t52477H Brassica oleracea HOM05D001456 ORTHO05D011036 2.9e-06 56.6 74 40.5
BolC9t58608H Brassica oleracea HOM05D001636 ORTHO05D009134 2.9e-06 56.6 69 43.5
Carub.0001s0200 Capsella rubella HOM05D001636 ORTHO05D013186 2.9e-06 56.6 73 45.2
Carub.0033s0006 Capsella rubella HOM05D001636 ORTHO05D013186 2.9e-06 56.6 73 45.2
Ciclev10003599m.g Citrus clementina HOM05D001456 ORTHO05D002799 2.9e-06 56.6 75 45.3
Dinv24507 Davidia involucrata HOM05D001456 ORTHO05D002799 2.9e-06 56.6 71 45.1
Peaxi162Scf00357g00114 Petunia axillaris HOM05D001456 ORTHO05D002799 2.9e-06 56.6 71 43.7
Solyc02g088870.1 Solanum lycopersicum HOM05D001456 ORTHO05D002799 2.9e-06 56.6 75 45.3
Zm00001eb328720 Zea mays HOM05D001456 ORTHO05D002799 2.9e-06 56.6 81 40.7
AL1G11960 Arabidopsis lyrata HOM05D001456 ORTHO05D013186 3.8e-06 56.2 74 44.6
AL3G48630 Arabidopsis lyrata HOM05D001456 ORTHO05D013186 3.8e-06 56.2 72 40.3
C01p02860 Brassica napus HOM05D002637 ORTHO05D016052 3.8e-06 56.2 97 34.0
C02p17520 Brassica napus HOM05D001636 ORTHO05D009134 3.8e-06 56.2 69 42.0
C04p70100 Brassica napus HOM05D001636 ORTHO05D009134 3.8e-06 56.2 68 44.1
BolC4t28509H Brassica oleracea HOM05D001636 ORTHO05D009134 3.8e-06 56.2 68 44.1
Thhalv10000121m.g Eutrema salsugineum HOM05D001636 ORTHO05D009134 3.8e-06 56.2 69 42.0
Thhalv10017671m.g Eutrema salsugineum HOM05D001636 ORTHO05D011317 3.8e-06 56.2 71 42.3
Glyma.03G223251 Glycine max HOM05D001456 ORTHO05D002799 3.8e-06 56.2 71 45.1
Sopen02g033560 Solanum pennellii HOM05D001456 ORTHO05D002799 3.8e-06 56.2 75 45.3
AT5G61190 Arabidopsis thaliana HOM05D001456 ORTHO05D002799 4.9e-06 55.8 76 40.8
BcaB02g09846 Brassica carinata HOM05D001165 ORTHO05D001347 4.9e-06 55.8 81 34.6
BcaC03g14332 Brassica carinata HOM05D001636 ORTHO05D009134 4.9e-06 55.8 69 42.0
C09p57360 Brassica napus HOM05D001636 ORTHO05D009134 4.9e-06 55.8 70 45.7
CARHR002680 Cardamine hirsuta HOM05D001636 ORTHO05D018439 4.9e-06 55.8 84 40.5
DCAR_018246 Daucus carota HOM05D001456 ORTHO05D002799 4.9e-06 55.8 82 41.5
DCAR_018247 Daucus carota HOM05D000103 ORTHO05D002799 4.9e-06 55.8 82 41.5
Manes.01G233600 Manihot esculenta HOM05D001456 ORTHO05D002799 4.9e-06 55.8 88 37.5
CDE09G1275 Ceratophyllum demersum HOM05D001456 ORTHO05D002799 6.4e-06 55.5 74 44.6
GSVIVG01031320001 Vitis vinifera HOM05D001456 ORTHO05D002799 6.4e-06 55.5 74 44.6
BcaC06g33505 Brassica carinata HOM05D001636 ORTHO05D009134 8.4e-06 55.1 70 45.7
BolC1t02221H Brassica oleracea HOM05D001636 ORTHO05D009134 8.4e-06 55.1 78 42.3
BraSC79t46681Z Brassica rapa HOM05D002637 ORTHO05D015500 8.4e-06 55.1 49 49.0
Carub.0002s0630 Capsella rubella HOM05D001456 ORTHO05D013186 8.4e-06 55.1 96 32.3
AUR62011701 Chenopodium quinoa HOM05D001456 ORTHO05D002799 8.4e-06 55.1 91 36.3
AUR62024558 Chenopodium quinoa HOM05D001456 ORTHO05D002799 8.4e-06 55.1 91 36.3
Thhalv10024069m.g Eutrema salsugineum HOM05D001636 ORTHO05D009134 8.4e-06 55.1 101 37.6
PGR031G2409 Punica granatum HOM05D001456 ORTHO05D002799 8.4e-06 55.1 95 36.8
PGR031G2483 Punica granatum HOM05D001456 ORTHO05D002799 8.4e-06 55.1 116 32.8
SEGI_20611 Sequoiadendron giganteum HOM05D001456 ORTHO05D004886 8.4e-06 55.1 74 41.9
Zm00001eb109990 Zea mays HOM05D001456 ORTHO05D002799 8.4e-06 55.1 81 40.7


User provided reference genes

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