Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 3.5e-109 398.3 200 100.0
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 1.5e-104 382.9 217 90.8
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 2.6e-96 355.5 182 97.8
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 1.2e-93 346.7 215 85.1
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 3.0e-92 342.0 233 78.5
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 8.7e-92 340.5 236 78.8
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 1.5e-91 339.7 234 78.6
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 1.9e-91 339.3 233 78.1
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 2.5e-91 339.0 235 78.3
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 4.3e-91 338.2 235 77.4
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 9.7e-91 337.0 235 77.0
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 1.6e-90 336.3 230 79.1
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 5.3e-89 331.3 234 76.1
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 5.9e-88 327.8 235 76.6
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 2.2e-87 325.9 192 88.0
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 6.5e-87 324.3 233 76.4
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 5.5e-86 321.2 235 75.3
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 2.7e-85 318.9 227 74.4
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 2.8e-82 308.9 235 69.4
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 1.2e-77 293.5 230 67.8
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 4.4e-75 285.0 228 65.8
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 6.3e-74 281.2 233 65.2
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 2.4e-73 279.3 228 65.8
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 2.4e-73 279.3 231 63.6
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 1.5e-72 276.6 229 64.2
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 1.5e-72 276.6 231 63.6
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 4.5e-72 275.0 237 62.9
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 5.9e-72 274.6 229 64.6
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 5.9e-72 274.6 240 64.2
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 5.9e-72 274.6 231 65.4
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 1.0e-71 273.9 233 62.2
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.3e-71 273.5 230 62.2
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 1.7e-71 273.1 237 64.1
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 2.2e-71 272.7 234 61.1
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 5.0e-71 271.6 233 61.8
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 5.0e-71 271.6 231 65.4
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 5.0e-71 271.6 230 63.5
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 5.0e-71 271.6 234 60.7
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 6.5e-71 271.2 230 62.2
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 8.5e-71 270.8 230 63.5
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 1.1e-70 270.4 230 63.5
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 1.1e-70 270.4 230 63.9
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 2.5e-70 269.2 230 62.6
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 5.5e-70 268.1 235 63.0
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 1.6e-69 266.5 230 63.5
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 4.7e-69 265.0 230 60.4
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 6.1e-69 264.6 219 63.5
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 6.1e-69 264.6 231 60.6
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 6.1e-69 264.6 232 62.5
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 1.0e-68 263.8 231 62.3
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 3.0e-68 262.3 237 59.5
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 3.0e-68 262.3 231 62.8
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 1.1e-67 260.4 233 60.1
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 2.0e-67 259.6 225 61.8
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 2.0e-67 259.6 218 70.2
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 2.0e-67 259.6 232 58.6
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 3.3e-67 258.8 235 59.6
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 4.4e-67 258.5 235 59.1
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 4.4e-67 258.5 236 59.3
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 5.7e-67 258.1 231 61.0
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 5.7e-67 258.1 236 58.9
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 2.8e-66 255.8 229 60.3
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 4.8e-66 255.0 216 61.1
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 4.8e-66 255.0 231 58.9
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 6.3e-66 254.6 235 57.9
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 1.1e-65 253.8 222 59.0
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 1.8e-65 253.1 235 58.3
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 1.8e-65 253.1 237 57.4
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 1.8e-65 253.1 234 58.1
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 2.4e-65 252.7 230 58.3
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 2.4e-65 252.7 236 58.9
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 3.1e-65 252.3 220 58.2
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 3.1e-65 252.3 231 58.4
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 7.0e-65 251.1 232 57.3
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 9.1e-65 250.8 231 60.2
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 9.1e-65 250.8 232 59.9
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 9.1e-65 250.8 240 60.8
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.2e-64 250.4 222 59.9
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 1.6e-64 250.0 215 61.4
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.6e-64 250.0 230 57.8
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 1.6e-64 250.0 238 58.4
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 2.6e-64 249.2 228 58.3
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 3.5e-64 248.8 216 61.1
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 4.5e-64 248.4 230 58.3
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 4.5e-64 248.4 230 59.1
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 4.5e-64 248.4 227 58.6
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 4.5e-64 248.4 216 60.6
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 7.7e-64 247.7 228 58.8
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 1.3e-63 246.9 236 58.1
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 3.8e-63 245.4 231 60.6
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 7.2e-62 241.1 207 62.3
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 9.4e-62 240.7 227 57.3
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 1.6e-61 240.0 223 56.5
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 2.7e-61 239.2 225 56.0
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 3.6e-61 238.8 232 58.2
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 6.1e-61 238.0 226 56.2
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 1.4e-60 236.9 191 69.1
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 1.4e-60 236.9 191 69.1
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 1.4e-60 236.9 228 54.4
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 3.0e-60 235.7 241 52.7
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 4.0e-60 235.3 230 54.8
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 4.0e-60 235.3 228 56.1
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 7.5e-59 231.1 220 55.0
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 3.5e-56 222.2 123 92.7
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 3.5e-56 222.2 220 54.1
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 4.5e-56 221.9 241 54.4
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 1.0e-55 220.7 223 51.1
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 6.5e-55 218.0 238 47.5
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 4.2e-54 215.3 210 54.3
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 3.4e-51 205.7 216 53.2
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 4.4e-51 205.3 214 51.9
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.4e-49 200.3 208 52.9
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.4e-49 200.3 206 52.9
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 3.1e-49 199.1 212 49.5
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 4.1e-49 198.7 219 48.9
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 2.5e-46 189.5 203 48.8
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 3.3e-38 162.5 179 55.9
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 4.7e-37 158.7 95 82.1
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 2.0e-35 153.3 152 55.3
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 3.7e-34 149.1 163 50.3
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 7.0e-33 144.8 162 51.2
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 3.5e-32 142.5 71 98.6
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 6.0e-32 141.7 95 69.5
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 4.6e-24 115.5 214 36.9
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 1.1e-22 110.9 202 37.1
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 5.6e-22 108.6 158 45.6
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 3.1e-20 102.8 58 81.0
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 2.0e-19 100.1 54 88.9
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 1.3e-18 97.4 208 29.3
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 9.2e-17 91.3 118 46.6
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 1.2e-13 80.9 48 83.3
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 2.9e-10 69.7 71 56.3
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 6.4e-10 68.6 71 57.7
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 3.2e-09 66.2 70 55.7
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 4.6e-08 62.4 40 75.0
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 6.0e-08 62.0 40 77.5
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 8.7e-07 58.2 63 49.2
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 2.5e-06 56.6 50 52.0


User provided reference genes

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