Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p14370 Brassica napus HOM05D002138 ORTHO05D002106 1.6e-82 309.7 195 100.0
BolC1t01395H Brassica oleracea HOM05D002138 ORTHO05D002106 1.6e-82 309.7 195 100.0
BolC7t45586H Brassica oleracea HOM05D002138 ORTHO05D002106 2.0e-64 249.6 208 69.7
Aa31LG6G2770 Aethionema arabicum HOM05D002138 ORTHO05D002106 2.2e-63 246.1 195 83.6
A08p14830 Brassica napus HOM05D002138 ORTHO05D002106 2.3e-60 236.1 196 81.1
BcaC09g51342 Brassica carinata HOM05D002138 ORTHO05D002106 5.0e-60 235.0 161 100.0
A01p12080 Brassica napus HOM05D002138 ORTHO05D002106 6.2e-58 228.0 195 79.5
BraA01t01151Z Brassica rapa HOM05D002138 ORTHO05D002106 6.2e-58 228.0 195 79.5
BraA03t14321Z Brassica rapa HOM05D002138 ORTHO05D002106 5.8e-48 194.9 194 69.6
BcaB03g11670 Brassica carinata HOM05D002138 ORTHO05D002106 1.1e-46 190.7 195 71.3
Sp7g18750 Schrenkiella parvula HOM05D002138 ORTHO05D002106 1.6e-45 186.8 196 69.9
C07p50880 Brassica napus HOM05D002138 ORTHO05D002106 7.8e-45 184.5 195 70.8
BcaC01g00667 Brassica carinata HOM05D002138 ORTHO05D002106 1.1e-43 180.6 196 57.1
A03p52420 Brassica napus HOM05D002138 ORTHO05D002106 2.5e-43 179.5 194 71.1
Thhalv10026533m.g Eutrema salsugineum HOM05D002138 ORTHO05D002106 2.1e-42 176.4 141 87.9
Carub.0007s2078 Capsella rubella HOM05D002138 ORTHO05D002106 3.4e-40 169.1 202 66.8
FAN21G3756 Fragaria x ananassa HOM05D002138 ORTHO05D002106 2.1e-37 159.8 195 62.6
BraA08t33467Z Brassica rapa HOM05D002138 ORTHO05D002106 2.7e-37 159.5 196 66.3
THA.LOC104812929 Tarenaya hassleriana HOM05D002138 ORTHO05D002106 3.5e-37 159.1 195 64.6
AL7G33510 Arabidopsis lyrata HOM05D002138 ORTHO05D002106 7.8e-37 157.9 203 64.0
Thhalv10001047m.g Eutrema salsugineum HOM05D002138 ORTHO05D002106 5.6e-35 151.8 194 62.4
CARHR227210 Cardamine hirsuta HOM05D002138 ORTHO05D002106 1.6e-34 150.2 195 63.6
AT4G20380 Arabidopsis thaliana HOM05D002138 ORTHO05D002106 2.1e-34 149.8 203 63.5
BolC3t20573H Brassica oleracea HOM05D002138 ORTHO05D002106 6.9e-33 144.8 129 78.3
Cpa.g.sc832.2 Carica papaya HOM05D002138 ORTHO05D002106 1.3e-31 140.6 141 76.6
THA.LOC104812036 Tarenaya hassleriana HOM05D002138 ORTHO05D002106 2.9e-31 139.4 195 60.5
HanXRQChr12g0358431 Helianthus annuus HOM05D002138 ORTHO05D002106 6.4e-31 138.3 142 74.6
SGA_v2.0_scaffold66G22446 Striga asiatica HOM05D004327 ORTHO05D005032 8.4e-31 137.9 201 44.8
Oeu052706.2 Olea europaea HOM05D002138 ORTHO05D002106 3.2e-30 136.0 246 49.2
Sp2g09350 Schrenkiella parvula HOM05D002138 ORTHO05D002106 1.2e-29 134.0 195 59.0
TPR.G6267 Trifolium pratense HOM05D002138 ORTHO05D002106 1.2e-29 134.0 195 57.9
TAR627G0773 Trochodendron aralioides HOM05D002138 ORTHO05D002106 1.2e-29 134.0 143 74.8
vmacro10995 Vaccinium macrocarpon HOM05D002138 ORTHO05D002106 1.6e-29 133.7 146 73.3
C03p82900 Brassica napus HOM05D002138 ORTHO05D002106 2.1e-29 133.3 129 76.0
CSS0019083 Camellia sinensis var. sinensis HOM05D002138 ORTHO05D002106 1.7e-28 130.2 195 54.9
Sabra16G0299000 Salix brachista HOM05D002138 ORTHO05D002106 1.7e-28 130.2 144 69.4
Lj4g0018656 Lotus japonicus HOM05D002138 ORTHO05D002106 5.1e-28 128.6 195 55.9
Medtr8g089310 Medicago truncatula HOM05D002138 ORTHO05D002106 1.9e-27 126.7 195 55.9
Manes.03G069700 Manihot esculenta HOM05D002138 ORTHO05D002106 2.5e-27 126.3 195 56.9
Psat7g060840 Pisum sativum HOM05D002138 ORTHO05D002106 3.3e-27 125.9 141 73.0
MELO3C007039.2 Cucumis melo HOM05D002138 ORTHO05D002106 5.6e-27 125.2 141 69.5
Ciclev10016959m.g Citrus clementina HOM05D002138 ORTHO05D002106 7.3e-27 124.8 195 55.4
VMungo0251G0598 Vigna mungo HOM05D002138 ORTHO05D002106 2.1e-26 123.2 195 55.4
Prupe.4G102000 Prunus persica HOM05D002138 ORTHO05D002106 2.8e-26 122.9 195 57.4
Manes.16G062400 Manihot esculenta HOM05D002138 ORTHO05D002106 3.6e-26 122.5 195 57.4
MD10G1241200 Malus domestica HOM05D002138 ORTHO05D002106 4.8e-26 122.1 195 56.9
Phvul.002G252000 Phaseolus vulgaris HOM05D002138 ORTHO05D002106 6.2e-26 121.7 195 55.4
Duzib235G1231 Durio zibethinus HOM05D002330 ORTHO05D002411 8.1e-26 121.3 195 54.9
BcaC06g34539 Brassica carinata HOM05D002138 ORTHO05D002106 1.4e-25 120.6 196 56.1
C07p27430 Brassica napus HOM05D002138 ORTHO05D002106 1.4e-25 120.6 196 56.1
BolC7t43273H Brassica oleracea HOM05D002138 ORTHO05D002106 1.4e-25 120.6 196 56.1
CANSAT35G1191 Cannabis sativa HOM05D002138 ORTHO05D002106 1.4e-25 120.6 195 57.4
Aa31LG9G8650 Aethionema arabicum HOM05D002138 ORTHO05D002106 1.8e-25 120.2 196 56.6
Lalb_Chr23g0276031 Lupinus albus HOM05D002138 ORTHO05D002106 1.8e-25 120.2 195 54.4
Atru.chr10.656 Acer truncatum HOM05D002330 ORTHO05D002411 4.0e-25 119.0 195 54.9
Lsat_1_v5_gn_5_84081 Lactuca sativa HOM05D002138 ORTHO05D002106 5.3e-25 118.6 195 55.9
RhsimUnG0090000 Rhododendron simsii HOM05D002138 ORTHO05D002106 6.9e-25 118.2 196 56.1
Ca_17809_v3 Cicer arietinum L. HOM05D002138 ORTHO05D002106 1.2e-24 117.5 195 52.3
AL7G46100 Arabidopsis lyrata HOM05D002138 ORTHO05D002106 2.6e-24 116.3 72 88.9
Lalb_Chr08g0233161 Lupinus albus HOM05D002138 ORTHO05D002106 2.6e-24 116.3 195 55.9
QL05p063069 Quercus lobata HOM05D002138 ORTHO05D002106 2.6e-24 116.3 194 54.6
Thecc.06G005100 Theobroma cacao HOM05D002138 ORTHO05D002106 2.6e-24 116.3 195 55.9
Glyma.15G192000 Glycine max HOM05D002138 ORTHO05D002106 4.5e-24 115.5 196 55.1
Rhsim02G0167700 Rhododendron simsii HOM05D002138 ORTHO05D002106 5.8e-24 115.2 196 55.6
COL.COLO4_26865 Corchorus olitorius HOM05D002330 ORTHO05D002411 7.6e-24 114.8 195 53.3
Dinv11971 Davidia involucrata HOM05D002138 ORTHO05D002106 7.6e-24 114.8 195 52.8
Gohir.A06G202300 Gossypium hirsutum HOM05D002138 ORTHO05D002106 7.6e-24 114.8 195 54.4
MD05G1263500 Malus domestica HOM05D002138 ORTHO05D002106 7.6e-24 114.8 193 54.4
Potri.001G442400 Populus trichocarpa HOM05D002138 ORTHO05D002106 9.9e-24 114.4 195 53.8
Cc06_g12860 Coffea canephora HOM05D002138 ORTHO05D002106 1.3e-23 114.0 195 53.8
PGR083G1218 Punica granatum HOM05D002138 ORTHO05D002106 1.7e-23 113.6 194 54.6
Eucgr.A00512 Eucalyptus grandis HOM05D002138 ORTHO05D002106 2.2e-23 113.2 195 52.3
Gohir.A10G004900 Gossypium hirsutum HOM05D002138 ORTHO05D002106 2.2e-23 113.2 195 51.3
Gohir.D06G219400 Gossypium hirsutum HOM05D002138 ORTHO05D002106 2.2e-23 113.2 195 54.4
Gohir.D10G004900 Gossypium hirsutum HOM05D002138 ORTHO05D002106 2.2e-23 113.2 195 51.3
TWI63G1074 Tripterygium wilfordii HOM05D002138 ORTHO05D002106 4.9e-23 112.1 195 52.8
TAR629G1185 Trochodendron aralioides HOM05D002138 ORTHO05D002106 6.4e-23 111.7 195 54.4
arahy.Tifrunner.gnm1.ann1.0BUM6B Arachis hypogaea HOM05D002138 ORTHO05D002106 8.4e-23 111.3 195 53.8
arahy.Tifrunner.gnm1.ann1.0IDF8B Arachis hypogaea HOM05D002138 ORTHO05D002106 8.4e-23 111.3 195 53.8
Lalb_Chr12g0204321 Lupinus albus HOM05D002138 ORTHO05D002106 1.1e-22 110.9 195 52.3
Potri.011G154800 Populus trichocarpa HOM05D002138 ORTHO05D002106 1.9e-22 110.2 195 52.8
Sed0010270 Sechium edule HOM05D002138 ORTHO05D002106 1.9e-22 110.2 195 53.3
CiPaw.09G149400 Carya illinoinensis HOM05D002138 ORTHO05D002106 2.4e-22 109.8 195 53.8
Gorai.011G005300 Gossypium raimondii HOM05D002138 ORTHO05D002106 2.4e-22 109.8 195 50.8
CiPaw.10G111300 Carya illinoinensis HOM05D002138 ORTHO05D002106 3.2e-22 109.4 195 52.3
FAN25G1398 Fragaria x ananassa HOM05D002138 ORTHO05D002106 3.2e-22 109.4 90 57.8
Gorai.010G246900 Gossypium raimondii HOM05D002138 ORTHO05D002106 5.4e-22 108.6 203 51.2
ClCG01G025450 Citrullus lanatus HOM05D002138 ORTHO05D002106 7.1e-22 108.2 195 53.3
CsaV3_6G052700 Cucumis sativus L. HOM05D002138 ORTHO05D002106 7.1e-22 108.2 195 53.3
Glyma.09G083500 Glycine max HOM05D002138 ORTHO05D002106 7.1e-22 108.2 195 51.8
TAR626G1147 Trochodendron aralioides HOM05D002138 ORTHO05D002106 2.7e-21 106.3 194 53.6
FAN16G0729 Fragaria x ananassa HOM05D000257 ORTHO05D009178 3.5e-21 105.9 195 53.8
Sed0010165 Sechium edule HOM05D002330 ORTHO05D002411 3.5e-21 105.9 191 51.8
Glyma.08G129400 Glycine max HOM05D002138 ORTHO05D002106 4.6e-21 105.5 195 52.8
Haze_05972 Corylus avellana HOM05D002138 ORTHO05D002106 6.0e-21 105.1 195 54.4
Glyma.U031408 Glycine max HOM05D002138 ORTHO05D002106 6.0e-21 105.1 195 52.3
Nitab4.5_0001298g0030 Nicotiana tabacum HOM05D002138 ORTHO05D002106 6.0e-21 105.1 131 65.6
Nn7g37741 Nelumbo nucifera HOM05D002138 ORTHO05D002106 1.0e-20 104.4 196 51.5
SalBow7G0802 Salvia bowleyana HOM05D002138 ORTHO05D002106 1.3e-20 104.0 191 50.8
ATR1098G036 Amborella trichopoda HOM05D002138 ORTHO05D002106 3.0e-20 102.8 195 51.3
MSTRG.16312 Avicennia marina HOM05D002138 ORTHO05D002106 5.1e-20 102.1 191 49.2
Nitab4.5_0000378g0080 Nicotiana tabacum HOM05D002138 ORTHO05D002106 5.1e-20 102.1 125 43.2
SGA_v2.0_scaffold69G23248 Striga asiatica HOM05D002138 ORTHO05D002106 5.1e-20 102.1 195 49.2
MSTRG.6246 Avicennia marina HOM05D002138 ORTHO05D002106 1.1e-19 100.9 195 49.2
HanXRQChr03g0084531 Helianthus annuus HOM05D002138 ORTHO05D002106 1.5e-19 100.5 194 52.6
Migut.J01511 Erythranthe guttata HOM05D002138 ORTHO05D002106 2.5e-19 99.8 195 48.7
Psat1g019560 Pisum sativum HOM05D002138 ORTHO05D002106 2.5e-19 99.8 195 51.8
Ca_02382_v3 Cicer arietinum L. HOM05D002138 ORTHO05D002106 3.3e-19 99.4 194 50.5
EL10Ac8g19641 Beta vulgaris HOM05D002138 ORTHO05D002106 4.3e-19 99.0 197 49.7
MBI18_g28207_MAGBIO Magnolia biondii HOM05D002138 ORTHO05D002106 9.6e-19 97.8 195 50.3
Lsat_1_v5_gn_8_68441 Lactuca sativa HOM05D002138 ORTHO05D002106 1.3e-18 97.4 194 51.0
CDE02G0016 Ceratophyllum demersum HOM05D002138 ORTHO05D002106 1.6e-18 97.1 198 49.5
Os12g0611000 Oryza sativa ssp. japonica HOM05D002138 ORTHO05D002106 2.1e-18 96.7 195 52.3
Lj2C338T15 Lonicera japonica HOM05D002138 ORTHO05D002106 2.8e-18 96.3 191 47.6
Aqoxy1G01592 Aquilegia oxysepala HOM05D002138 ORTHO05D002106 3.7e-18 95.9 195 50.8
RcHm_v2.0_Chr5g0018361 Rosa chinensis HOM05D002138 ORTHO05D002106 4.8e-18 95.5 195 51.8
Medtr2g047838 Medicago truncatula HOM05D002138 ORTHO05D002106 6.2e-18 95.1 196 50.0
Sabra16G0300900 Salix brachista HOM05D002138 ORTHO05D002106 1.1e-17 94.4 140 45.7
Gohir.D05G111800 Gossypium hirsutum HOM05D002138 ORTHO05D002106 1.4e-17 94.0 195 51.3
PGSC0003DMG400021196 Solanum tuberosum HOM05D002138 ORTHO05D002106 1.8e-17 93.6 191 48.7
Lsat_1_v5_gn_7_55201 Lactuca sativa HOM05D001519 ORTHO05D001403 2.4e-17 93.2 182 53.3
Gorai.009G116000 Gossypium raimondii HOM05D002138 ORTHO05D002106 3.1e-17 92.8 195 51.3
Oeu009081.3 Olea europaea HOM05D002138 ORTHO05D002106 3.1e-17 92.8 206 45.6
Sopen02g018840 Solanum pennellii HOM05D002138 ORTHO05D002106 3.1e-17 92.8 191 48.7
unitig_60.g25492 Utricularia gibba HOM05D002138 ORTHO05D002106 6.9e-17 91.7 189 47.1
MSTRG.14808 Avicennia marina HOM05D002138 ORTHO05D002106 9.0e-17 91.3 191 48.2
Solyc02g069720.3 Solanum lycopersicum HOM05D002138 ORTHO05D002106 2.0e-16 90.1 191 48.7
Nitab4.5_0006863g0020 Nicotiana tabacum HOM05D002138 ORTHO05D002106 5.8e-16 88.6 191 49.2
Oeu063150.1 Olea europaea HOM05D002138 ORTHO05D002106 7.6e-16 88.2 126 56.3
Pp3c11_12260 Physcomitrium patens HOM05D002138 ORTHO05D002106 1.3e-15 87.4 196 49.0
HPP92_015683 Vanilla planifolia HOM05D002138 ORTHO05D002106 1.7e-15 87.0 195 50.8
PRCOL_00000474 Prasinoderma coloniale HOM05D000558 ORTHO05D001857 2.9e-15 86.3 196 40.8
TPR.G625 Trifolium pratense HOM05D002138 ORTHO05D002106 2.9e-15 86.3 141 41.8
GSVIVG01037958001 Vitis vinifera HOM05D002138 ORTHO05D002106 2.9e-15 86.3 195 49.2
Sc22g0001600 Simmondsia chinensis HOM05D002138 ORTHO05D002106 3.2e-14 82.8 188 47.3
Lj6g0027782 Lotus japonicus HOM05D002138 ORTHO05D002106 5.5e-14 82.0 201 46.3
Os03g0639600 Oryza sativa ssp. japonica HOM05D002138 ORTHO05D002106 1.2e-13 80.9 202 46.5
Gohir.A05G111400 Gossypium hirsutum HOM05D002138 ORTHO05D002106 2.1e-13 80.1 201 48.8
PSO541G1019 Papaver somniferum HOM05D002138 ORTHO05D002106 2.1e-13 80.1 205 47.8
Pp3c7_12740 Physcomitrium patens HOM05D002138 ORTHO05D002106 2.1e-13 80.1 182 48.9
PSO675G6382 Papaver somniferum HOM05D002138 ORTHO05D002106 7.9e-13 78.2 206 47.6
Oeu000495.1 Olea europaea HOM05D002138 ORTHO05D002106 1.0e-12 77.8 190 45.3
SMO358G0140 Selaginella moellendorffii HOM05D002138 ORTHO05D002106 1.3e-12 77.4 196 46.9
Sabra11G0144900 Salix brachista HOM05D002330 ORTHO05D002411 1.8e-12 77.0 204 45.1
MSTRG.7564 Avicennia marina HOM05D002138 ORTHO05D002106 3.9e-12 75.9 197 44.2
Migut.M01935 Erythranthe guttata HOM05D002138 ORTHO05D002106 3.9e-12 75.9 199 43.7
Oeu060328.1 Olea europaea HOM05D002138 ORTHO05D002106 3.9e-12 75.9 192 47.9
Zm00001eb050760 Zea mays HOM05D002138 ORTHO05D002106 6.7e-12 75.1 197 44.2
HPP92_016666 Vanilla planifolia HOM05D002138 ORTHO05D002106 3.3e-11 72.8 195 43.6
ECA234G3665 Erigeron canadensis HOM05D002895 ORTHO05D003286 4.3e-11 72.4 128 43.8
vmacro00338 Vaccinium macrocarpon HOM05D007781 ORTHO05D002106 7.4e-11 71.6 68 50.0
Zm00001eb135920 Zea mays HOM05D002138 ORTHO05D002106 7.4e-11 71.6 186 46.2
HPP92_011023 Vanilla planifolia HOM05D002138 ORTHO05D002106 1.6e-10 70.5 194 43.8
CAN.G954.16 Capsicum annuum HOM05D002138 ORTHO05D002106 2.8e-10 69.7 193 44.6
ClCG10G001750 Citrullus lanatus HOM05D002138 ORTHO05D002106 3.7e-10 69.3 132 32.6
TWI15G0245 Tripterygium wilfordii HOM05D002138 ORTHO05D002106 1.1e-09 67.8 262 35.1
SGA_v2.0_scaffold298G47631 Striga asiatica HOM05D002138 ORTHO05D002106 2.4e-09 66.6 191 44.5
Lalb_Chr07g0185671 Lupinus albus HOM05D002138 ORTHO05D002106 3.1e-09 66.2 195 42.1
SalBow8G3701 Salvia bowleyana HOM05D002138 ORTHO05D002106 6.9e-09 65.1 270 36.3
SGA_v2.0_scaffold51G18667 Striga asiatica HOM05D002138 ORTHO05D002106 9.0e-09 64.7 187 46.0
Nitab4.5_0016624g0010 Nicotiana tabacum HOM05D002138 ORTHO05D002106 1.2e-08 64.3 128 31.2
AagrBONN_evm.TU.Sc2ySwM_362.175 Anthoceros agrestis HOM05D002138 ORTHO05D002106 2.6e-08 63.2 199 41.7
ClCG09G012100 Citrullus lanatus HOM05D002138 ORTHO05D002106 4.5e-08 62.4 132 35.6
SalBow8G2330 Salvia bowleyana HOM05D002138 ORTHO05D002106 1.0e-07 61.2 266 36.5
Sed0017721 Sechium edule HOM05D007781 ORTHO05D009769 1.3e-07 60.8 35 71.4
vmacro14163 Vaccinium macrocarpon HOM05D007781 ORTHO05D009769 1.3e-07 60.8 35 71.4
Sabra01G0112300 Salix brachista HOM05D002138 ORTHO05D002106 2.9e-07 59.7 142 28.9
CDE11G1104 Ceratophyllum demersum HOM05D002138 ORTHO05D002106 3.8e-07 59.3 96 41.7
Hund21537 Selenicereus undatus HOM05D002138 ORTHO05D002106 3.8e-07 59.3 65 60.0
Sopen02g023130 Solanum pennellii HOM05D007781 ORTHO05D009769 6.5e-07 58.5 61 45.9
Ah.14g086340 Amaranthus hybridus HOM05D002227 ORTHO05D002337 1.1e-06 57.8 65 58.5
CAN.G79.49 Capsicum annuum HOM05D002138 ORTHO05D002106 2.5e-06 56.6 35 65.7
DCAR_008280 Daucus carota HOM05D002138 ORTHO05D002106 2.5e-06 56.6 53 47.2
PGSC0003DMG400029720 Solanum tuberosum HOM05D007781 ORTHO05D009769 2.5e-06 56.6 61 44.3
SEGI_34632 Sequoiadendron giganteum HOM05D002138 ORTHO05D002106 3.2e-06 56.2 41 63.4
Solyc02g078270.3 Solanum lycopersicum HOM05D007781 ORTHO05D009769 4.2e-06 55.8 61 42.6
DCAR_028076 Daucus carota HOM05D007781 ORTHO05D009769 5.5e-06 55.5 34 67.6
Sopen02g009420 Solanum pennellii HOM05D002138 ORTHO05D000004 5.5e-06 55.5 60 58.3
Peaxi162Scf00267g00714 Petunia axillaris HOM05D002138 ORTHO05D002106 7.1e-06 55.1 35 65.7
SalBow6G3328 Salvia bowleyana HOM05D002138 ORTHO05D002106 7.1e-06 55.1 35 65.7
Sp7g19740 Schrenkiella parvula HOM05D007781 ORTHO05D009769 7.1e-06 55.1 34 67.6
Duzib160G0212 Durio zibethinus HOM05D002138 ORTHO05D002106 9.3e-06 54.7 35 65.7


User provided reference genes

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