Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p08310 Brassica napus HOM05D003333 ORTHO05D003836 1.9e-74 282.3 136 100.0
BcaC09g51854 Brassica carinata HOM05D003333 ORTHO05D003836 4.4e-63 244.6 119 97.5
BolC1t00817H Brassica oleracea HOM05D003333 ORTHO05D003836 4.4e-63 244.6 119 97.5
BcaC09g51853 Brassica carinata HOM05D003333 ORTHO05D003836 2.4e-45 185.7 115 78.3
Sp7g28520 Schrenkiella parvula HOM05D003333 ORTHO05D003836 2.9e-38 162.2 114 71.9
BcaNung00573 Brassica carinata HOM05D003333 ORTHO05D003836 2.6e-31 139.0 115 64.3
BcaNung04560 Brassica carinata HOM05D003333 ORTHO05D003836 1.0e-30 137.1 112 61.6
BcaNung04558 Brassica carinata HOM05D003333 ORTHO05D003836 2.2e-30 136.0 117 57.3
C07p58070 Brassica napus HOM05D003333 ORTHO05D003836 3.8e-30 135.2 113 63.7
BolC7t46266H Brassica oleracea HOM05D003333 ORTHO05D003836 3.8e-30 135.2 113 63.7
BolC7t46269H Brassica oleracea HOM05D003333 ORTHO05D003836 1.4e-29 133.3 124 58.9
BcaNung00576 Brassica carinata HOM05D003333 ORTHO05D003836 1.2e-28 130.2 117 54.7
C07p58110 Brassica napus HOM05D003333 ORTHO05D003836 1.2e-28 130.2 117 54.7
BcaNung04559 Brassica carinata HOM05D003333 ORTHO05D003836 1.6e-28 129.8 111 64.9
A03p60160 Brassica napus HOM05D003333 ORTHO05D003836 2.7e-28 129.0 110 62.7
A03p60210 Brassica napus HOM05D003333 ORTHO05D003836 6.0e-28 127.9 115 55.7
Carub.0005s1014 Capsella rubella HOM05D003333 ORTHO05D003836 1.3e-27 126.7 114 54.4
AL5G22560 Arabidopsis lyrata HOM05D003333 ORTHO05D003836 5.1e-27 124.8 113 54.0
Sp7g28530 Schrenkiella parvula HOM05D003333 ORTHO05D003836 5.7e-26 121.3 118 54.2
BcaNung00575 Brassica carinata HOM05D003333 ORTHO05D003836 1.6e-25 119.8 110 59.1
C07p58100 Brassica napus HOM05D003333 ORTHO05D003836 1.6e-25 119.8 120 56.7
Sp6g19570 Schrenkiella parvula HOM05D003333 ORTHO05D003836 1.6e-20 103.2 116 43.1
Cpa.g.sc46.170 Carica papaya HOM05D003333 ORTHO05D003836 4.6e-20 101.7 120 44.2
BolC9t57828H Brassica oleracea HOM05D003333 ORTHO05D003836 6.1e-20 101.3 117 42.7
C09p49770 Brassica napus HOM05D003333 ORTHO05D003836 7.9e-20 100.9 118 43.2
BcaB05g24930 Brassica carinata HOM05D003333 ORTHO05D003836 1.0e-19 100.5 119 44.5
Aa31LG2G19840 Aethionema arabicum HOM05D003333 ORTHO05D003836 6.7e-19 97.8 110 46.4
BcaNung02970 Brassica carinata HOM05D003333 ORTHO05D003836 6.7e-19 97.8 108 50.0
AT5G57900 Arabidopsis thaliana HOM05D003333 ORTHO05D003836 1.1e-18 97.1 116 42.2
BraA10t43607Z Brassica rapa HOM05D003333 ORTHO05D003836 1.5e-18 96.7 118 42.4
TWI34G1096 Tripterygium wilfordii HOM05D003333 ORTHO05D003836 1.5e-18 96.7 109 48.6
Aa31LG2G19800 Aethionema arabicum HOM05D003333 ORTHO05D003836 1.9e-18 96.3 105 49.5
Manes.14G145200 Manihot esculenta HOM05D003333 ORTHO05D003836 1.9e-18 96.3 116 44.8
A10p15260 Brassica napus HOM05D003333 ORTHO05D003836 3.3e-18 95.5 118 42.4
BcaB03g12653 Brassica carinata HOM05D003333 ORTHO05D003836 9.7e-18 94.0 117 41.0
RcHm_v2.0_Chr2g0085481 Rosa chinensis HOM05D003333 ORTHO05D003836 9.7e-18 94.0 119 46.2
AL8G33960 Arabidopsis lyrata HOM05D003333 ORTHO05D003836 1.7e-17 93.2 116 41.4
A01p07610 Brassica napus HOM05D003333 ORTHO05D003836 1.7e-17 93.2 105 48.6
Thhalv10014209m.g Eutrema salsugineum HOM05D003333 ORTHO05D003836 1.7e-17 93.2 103 44.7
BraA01t00704Z Brassica rapa HOM05D003333 ORTHO05D003836 2.2e-17 92.8 109 47.7
AL7G21500 Arabidopsis lyrata HOM05D003333 ORTHO05D003836 3.7e-17 92.0 78 56.4
Oeu018383.3 Olea europaea HOM05D003333 ORTHO05D003836 3.7e-17 92.0 117 39.3
AT4G30640 Arabidopsis thaliana HOM05D003333 ORTHO05D003836 6.3e-17 91.3 78 53.8
BcaC09g51858 Brassica carinata HOM05D003333 ORTHO05D003836 6.3e-17 91.3 105 47.6
C01p08250 Brassica napus HOM05D003333 ORTHO05D003836 8.2e-17 90.9 105 47.6
BolC1t00813H Brassica oleracea HOM05D003333 ORTHO05D003836 8.2e-17 90.9 105 47.6
Prupe.7G264700 Prunus persica HOM05D003333 ORTHO05D003836 1.8e-16 89.7 110 49.1
CANSAT11G2442 Cannabis sativa HOM05D003333 ORTHO05D003836 2.4e-16 89.4 107 43.9
Migut.J01369 Erythranthe guttata HOM05D003333 ORTHO05D003836 2.4e-16 89.4 117 41.0
Aa31LG2G19860 Aethionema arabicum HOM05D003333 ORTHO05D003836 3.1e-16 89.0 103 45.6
Psat0s3930g0160 Pisum sativum HOM05D003333 ORTHO05D003836 3.1e-16 89.0 74 55.4
Sabra18G0089700 Salix brachista HOM05D003333 ORTHO05D003836 3.1e-16 89.0 74 58.1
FAN26G2607 Fragaria x ananassa HOM05D003333 ORTHO05D003836 4.1e-16 88.6 74 59.5
Aa31LG3G13720 Aethionema arabicum HOM05D003333 ORTHO05D003836 5.3e-16 88.2 106 43.4
CSS0000248 Camellia sinensis var. sinensis HOM05D003333 ORTHO05D003836 5.3e-16 88.2 74 54.1
Carub.0008s1843 Capsella rubella HOM05D003333 ORTHO05D003836 1.5e-15 86.7 109 40.4
FAN23G0545 Fragaria x ananassa HOM05D003333 ORTHO05D003836 1.5e-15 86.7 110 46.4
Nitab4.5_0002724g0090 Nicotiana tabacum HOM05D003333 ORTHO05D003836 1.5e-15 86.7 107 39.3
TPR.G24850 Trifolium pratense HOM05D003333 ORTHO05D003836 1.5e-15 86.7 74 54.1
Thhalv10014217m.g Eutrema salsugineum HOM05D003333 ORTHO05D003836 2.0e-15 86.3 106 41.5
HanXRQChr09g0244551 Helianthus annuus HOM05D003333 ORTHO05D003836 2.6e-15 85.9 115 43.5
Hma1.2p1_0222F.1_g093690 Hydrangea macrophylla HOM05D003333 ORTHO05D003836 2.6e-15 85.9 74 51.4
FvH4_1g00760 Fragaria vesca HOM05D003333 ORTHO05D003836 3.4e-15 85.5 74 56.8
FAN28G1118 Fragaria x ananassa HOM05D003333 ORTHO05D003836 3.4e-15 85.5 74 56.8
MD02G1006200 Malus domestica HOM05D003333 ORTHO05D003836 3.4e-15 85.5 74 56.8
Potri.018G104900 Populus trichocarpa HOM05D003333 ORTHO05D003836 3.4e-15 85.5 74 55.4
Nn8g39960 Nelumbo nucifera HOM05D003333 ORTHO05D003836 4.5e-15 85.1 74 52.7
SGA_v2.0_scaffold265G46094 Striga asiatica HOM05D003333 ORTHO05D003836 4.5e-15 85.1 106 47.2
Atru.chr6.2482 Acer truncatum HOM05D003333 ORTHO05D003836 5.9e-15 84.7 117 39.3
Aa31LG2G19790 Aethionema arabicum HOM05D003333 ORTHO05D003836 5.9e-15 84.7 72 55.6
Cc00_g27050 Coffea canephora HOM05D003333 ORTHO05D003836 5.9e-15 84.7 113 42.5
CARHR271670 Cardamine hirsuta HOM05D003333 ORTHO05D003836 7.7e-15 84.3 103 42.7
Gohir.A05G052600 Gossypium hirsutum HOM05D003333 ORTHO05D003836 7.7e-15 84.3 74 50.0
Gorai.009G056000 Gossypium raimondii HOM05D003333 ORTHO05D003836 7.7e-15 84.3 74 50.0
Thecc.09G028300 Theobroma cacao HOM05D003333 ORTHO05D003836 7.7e-15 84.3 72 52.8
Duzib168G0432 Durio zibethinus HOM05D003333 ORTHO05D003836 1.0e-14 84.0 74 51.4
Glyma.02G205200 Glycine max HOM05D003333 ORTHO05D003836 1.0e-14 84.0 74 54.1
Eucgr.L01446 Eucalyptus grandis HOM05D003333 ORTHO05D003836 2.2e-14 82.8 74 51.4
Gohir.D05G054300 Gossypium hirsutum HOM05D003333 ORTHO05D003836 2.2e-14 82.8 74 48.6
Lj9A718T41 Lonicera japonica HOM05D003333 ORTHO05D003836 2.9e-14 82.4 74 50.0
PSO541G3342 Papaver somniferum HOM05D003333 ORTHO05D003836 2.9e-14 82.4 105 40.0
QL02p093741 Quercus lobata HOM05D003333 ORTHO05D003836 2.9e-14 82.4 107 43.0
THA.LOC104811832 Tarenaya hassleriana HOM05D003333 ORTHO05D003836 2.9e-14 82.4 110 41.8
DCAR_019403 Daucus carota HOM05D003333 ORTHO05D003836 3.8e-14 82.0 74 50.0
Aqoxy7G03374 Aquilegia oxysepala HOM05D003333 ORTHO05D003836 5.0e-14 81.6 104 44.2
Medtr4g130620 Medicago truncatula HOM05D003333 ORTHO05D003836 5.0e-14 81.6 74 51.4
MELO3C004126.2 Cucumis melo HOM05D003333 ORTHO05D003836 6.5e-14 81.3 68 57.4
FAN08G3193 Fragaria x ananassa HOM05D003333 ORTHO05D003836 8.5e-14 80.9 119 40.3
FAN26G3012 Fragaria x ananassa HOM05D003333 ORTHO05D003836 8.5e-14 80.9 119 40.3
THA.LOC104803544 Tarenaya hassleriana HOM05D003333 ORTHO05D003836 8.5e-14 80.9 109 42.2
Dinv42841 Davidia involucrata HOM05D003333 ORTHO05D003836 1.1e-13 80.5 74 50.0
Dinv43259 Davidia involucrata HOM05D003333 ORTHO05D003836 1.1e-13 80.5 74 50.0
Eucgr.C02501 Eucalyptus grandis HOM05D003333 ORTHO05D003836 1.1e-13 80.5 74 50.0
Eucgr.L03182 Eucalyptus grandis HOM05D003333 ORTHO05D003836 1.1e-13 80.5 74 50.0
MSTRG.6153 Avicennia marina HOM05D003333 ORTHO05D003836 1.4e-13 80.1 74 51.4
VMungo1215G1683 Vigna mungo HOM05D003333 ORTHO05D003836 1.4e-13 80.1 74 51.4
CARHR238520 Cardamine hirsuta HOM05D003333 ORTHO05D003836 1.9e-13 79.7 108 39.8
SalBow1G6609 Salvia bowleyana HOM05D003333 ORTHO05D003836 1.9e-13 79.7 107 40.2
A03p60200 Brassica napus HOM05D003333 ORTHO05D003836 2.5e-13 79.3 74 58.1
Ca_21138_v3 Cicer arietinum L. HOM05D003333 ORTHO05D003836 2.5e-13 79.3 74 48.6
Ca_21143_v3 Cicer arietinum L. HOM05D003333 ORTHO05D003836 2.5e-13 79.3 74 48.6
ClCG02G014400 Citrullus lanatus HOM05D003333 ORTHO05D003836 2.5e-13 79.3 109 42.2
FAN16G1551 Fragaria x ananassa HOM05D003333 ORTHO05D003836 2.5e-13 79.3 117 40.2
Lsat_1_v5_gn_7_50080 Lactuca sativa HOM05D003333 ORTHO05D003836 2.5e-13 79.3 74 50.0
Lj4g0011279 Lotus japonicus HOM05D003333 ORTHO05D003836 2.5e-13 79.3 74 50.0
Nitab4.5_0002320g0010 Nicotiana tabacum HOM05D003333 ORTHO05D003836 2.5e-13 79.3 74 48.6
CAN.G160.47 Capsicum annuum HOM05D003333 ORTHO05D003836 3.2e-13 79.0 75 49.3
ECA240G0541 Erigeron canadensis HOM05D003333 ORTHO05D003836 3.2e-13 79.0 108 43.5
Phvul.003G155100 Phaseolus vulgaris HOM05D003333 ORTHO05D003836 3.2e-13 79.0 74 50.0
Hund08925 Selenicereus undatus HOM05D003333 ORTHO05D003836 3.2e-13 79.0 74 48.6
Carub.0007s0992 Capsella rubella HOM05D003333 ORTHO05D003836 4.2e-13 78.6 78 47.4
Sp7g28550 Schrenkiella parvula HOM05D003333 ORTHO05D003836 4.2e-13 78.6 103 39.8
ATR0019G010 Amborella trichopoda HOM05D003333 ORTHO05D003836 7.2e-13 77.8 119 34.5
FAN13G1111 Fragaria x ananassa HOM05D003333 ORTHO05D003836 7.2e-13 77.8 122 41.8
Zm00001eb177870 Zea mays HOM05D003333 ORTHO05D003836 7.2e-13 77.8 120 40.8
CsaV3_2G007600 Cucumis sativus L. HOM05D003333 ORTHO05D003836 9.4e-13 77.4 68 54.4
Sed0000092 Sechium edule HOM05D003333 ORTHO05D003836 9.4e-13 77.4 109 40.4
EL10Ac8g18939 Beta vulgaris HOM05D003333 ORTHO05D003836 1.2e-12 77.0 74 45.9
FvH4_5g27040 Fragaria vesca HOM05D003333 ORTHO05D003836 1.2e-12 77.0 118 41.5
FAN21G3730 Fragaria x ananassa HOM05D003333 ORTHO05D003836 1.2e-12 77.0 112 42.0
Lalb_Chr13g0300781 Lupinus albus HOM05D003333 ORTHO05D003836 1.2e-12 77.0 68 51.5
Solyc07g005750.3 Solanum lycopersicum HOM05D003333 ORTHO05D003836 1.2e-12 77.0 108 40.7
Ciclev10008985m.g Citrus clementina HOM05D003333 ORTHO05D003836 1.6e-12 76.6 74 48.6
Sopen07g001850 Solanum pennellii HOM05D003333 ORTHO05D003836 2.7e-12 75.9 72 48.6
arahy.Tifrunner.gnm1.ann1.GH9EZK Arachis hypogaea HOM05D003333 ORTHO05D003836 3.6e-12 75.5 74 47.3
arahy.Tifrunner.gnm1.ann1.LQ9XAK Arachis hypogaea HOM05D003333 ORTHO05D003836 3.6e-12 75.5 74 47.3
AUR62028344 Chenopodium quinoa HOM05D003333 ORTHO05D003836 3.6e-12 75.5 68 52.9
PGR142G2767 Punica granatum HOM05D003333 ORTHO05D003836 3.6e-12 75.5 72 45.8
Aa31LG2G19780 Aethionema arabicum HOM05D003333 ORTHO05D003836 6.1e-12 74.7 103 41.7
Ah.14g084600 Amaranthus hybridus HOM05D003333 ORTHO05D003836 7.9e-12 74.3 74 48.6
CiPaw.15G166600 Carya illinoinensis HOM05D003333 ORTHO05D003836 7.9e-12 74.3 74 45.9
A08p19150 Brassica napus HOM05D003333 ORTHO05D003836 1.4e-11 73.6 73 46.6
BraA08t33876Z Brassica rapa HOM05D003333 ORTHO05D003836 1.4e-11 73.6 73 46.6
Dinv41364 Davidia involucrata HOM05D003333 ORTHO05D003836 2.3e-11 72.8 103 40.8
PGSC0003DMG400011146 Solanum tuberosum HOM05D003333 ORTHO05D003836 2.3e-11 72.8 72 45.8
Sc08g0009270 Simmondsia chinensis HOM05D003333 ORTHO05D003836 3.0e-11 72.4 105 41.9
FAN18G3430 Fragaria x ananassa HOM05D003333 ORTHO05D003836 5.1e-11 71.6 68 51.5
CDE04G3371 Ceratophyllum demersum HOM05D003333 ORTHO05D003836 8.8e-11 70.9 105 39.0
MBI15_g18227_MAGBIO Magnolia biondii HOM05D003333 ORTHO05D003836 8.8e-11 70.9 107 35.5
Peaxi162Scf00267g00510 Petunia axillaris HOM05D003333 ORTHO05D003836 8.8e-11 70.9 74 44.6
vmacro16794 Vaccinium macrocarpon HOM05D003333 ORTHO05D003836 8.8e-11 70.9 74 44.6
Ah.14g084580 Amaranthus hybridus HOM05D003333 ORTHO05D003836 1.1e-10 70.5 74 44.6
AUR62025341 Chenopodium quinoa HOM05D003333 ORTHO05D003836 1.1e-10 70.5 68 48.5
Rhsim01G0028000 Rhododendron simsii HOM05D003333 ORTHO05D003836 1.1e-10 70.5 64 50.0
CDE02G3474 Ceratophyllum demersum HOM05D003333 ORTHO05D003836 1.5e-10 70.1 72 43.1
BcaNung02972 Brassica carinata HOM05D003333 ORTHO05D003836 2.0e-10 69.7 49 67.3
Haze_19185 Corylus avellana HOM05D003333 ORTHO05D003836 2.0e-10 69.7 74 44.6
BolC3t21167H Brassica oleracea HOM05D003333 ORTHO05D003836 2.6e-10 69.3 99 36.4
TAR636G2329 Trochodendron aralioides HOM05D003333 ORTHO05D003836 4.4e-10 68.6 107 36.4
C07p58120 Brassica napus HOM05D003333 ORTHO05D003836 5.7e-10 68.2 88 46.6
BolC7t46271H Brassica oleracea HOM05D003333 ORTHO05D003836 5.7e-10 68.2 88 46.6
SEGI_02706 Sequoiadendron giganteum HOM05D003333 ORTHO05D003836 5.7e-10 68.2 108 36.1
SEGI_29061 Sequoiadendron giganteum HOM05D003333 ORTHO05D003836 5.7e-10 68.2 108 36.1
Oeu021319.1 Olea europaea HOM05D003333 ORTHO05D003836 9.7e-10 67.4 76 43.4
Cfa020808 Carpinus fangiana HOM05D003333 ORTHO05D003836 1.7e-09 66.6 74 41.9
Oeu021312.1 Olea europaea HOM05D003333 ORTHO05D003836 2.8e-09 65.9 74 43.2
HPP92_013422 Vanilla planifolia HOM05D003333 ORTHO05D003836 8.2e-09 64.3 74 40.5
TPR.G5421 Trifolium pratense HOM05D003333 ORTHO05D003836 1.4e-08 63.5 96 39.6
CANSAT11G0790 Cannabis sativa HOM05D002325 ORTHO05D000336 1.0e-06 57.4 96 33.3
DCAR_007852 Daucus carota HOM05D000710 ORTHO05D000336 1.0e-06 57.4 99 35.4
SGA_v2.0_scaffold65G22225 Striga asiatica HOM05D003333 ORTHO05D003836 1.0e-06 57.4 44 52.3
Solyc08g006920.3 Solanum lycopersicum HOM05D000710 ORTHO05D000336 1.3e-06 57.0 97 32.0
TPR.G349 Trifolium pratense HOM05D002325 ORTHO05D000336 3.8e-06 55.5 93 29.0
A09p02910 Brassica napus HOM05D000710 ORTHO05D000336 5.0e-06 55.1 117 34.2
DCAR_007853 Daucus carota HOM05D000710 ORTHO05D000336 5.0e-06 55.1 68 42.6
Mapoly0006s0173 Marchantia polymorpha HOM05D003333 ORTHO05D003836 5.0e-06 55.1 115 26.1
SEGI_24003 Sequoiadendron giganteum HOM05D002325 ORTHO05D000336 5.0e-06 55.1 92 35.9
AagrBONN_evm.TU.Sc2ySwM_368.1612 Anthoceros agrestis HOM05D003333 ORTHO05D003836 6.5e-06 54.7 106 33.0
DCAR_007854 Daucus carota HOM05D000710 ORTHO05D000336 6.5e-06 54.7 91 36.3


User provided reference genes

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