Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p05790 Brassica napus HOM05D004619 ORTHO05D005738 0.0e+00 1454.5 723 100.0
BcaC09g52091 Brassica carinata HOM05D004619 ORTHO05D005738 0.0e+00 1451.8 723 99.9
BraA01t00511Z Brassica rapa HOM05D004619 ORTHO05D005738 0.0e+00 1411.4 723 96.8
A01p05370 Brassica napus HOM05D004619 ORTHO05D005738 0.0e+00 1404.0 723 96.7
BolC1t00559H Brassica oleracea HOM05D004619 ORTHO05D005738 0.0e+00 1400.6 723 97.1
Thhalv10024536m.g Eutrema salsugineum HOM05D004619 ORTHO05D005738 0.0e+00 1343.6 723 92.0
Sp7g30680 Schrenkiella parvula HOM05D004619 ORTHO05D005738 0.0e+00 1321.6 723 91.1
AT4G32910 Arabidopsis thaliana HOM05D004619 ORTHO05D005738 0.0e+00 1306.6 723 90.0
CARHR240910 Cardamine hirsuta HOM05D004619 ORTHO05D005738 0.0e+00 1288.5 724 89.1
AL7G18800 Arabidopsis lyrata HOM05D004619 ORTHO05D005738 0.0e+00 1286.9 723 88.9
Carub.0007s0758 Capsella rubella HOM05D004619 ORTHO05D005738 0.0e+00 1285.0 723 88.5
Aa31sc131G40 Aethionema arabicum HOM05D004619 ORTHO05D005738 0.0e+00 1198.7 736 80.7
THA.LOC104803757 Tarenaya hassleriana HOM05D004619 ORTHO05D005738 0.0e+00 1170.2 726 79.9
CSS0048446 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 2.4e-296 1021.9 721 68.1
QL12p041325 Quercus lobata HOM05D004619 ORTHO05D005738 5.2e-296 1020.8 723 68.9
CSS0016966 Camellia sinensis var. sinensis HOM05D004619 ORTHO05D005738 1.2e-295 1019.6 721 67.8
GSVIVG01035621001 Vitis vinifera HOM05D004619 ORTHO05D005738 2.0e-295 1018.8 714 68.3
Prupe.1G448000 Prunus persica HOM05D004619 ORTHO05D005738 5.8e-295 1017.3 725 68.0
Ciclev10007610m.g Citrus clementina HOM05D004619 ORTHO05D005738 1.6e-292 1009.2 711 68.2
MD15G1093200 Malus domestica HOM05D004619 ORTHO05D005738 3.5e-292 1008.1 725 68.1
Atru.chr7.2086 Acer truncatum HOM05D004619 ORTHO05D005738 5.1e-291 1004.2 713 68.0
Duzib168G0872 Durio zibethinus HOM05D004619 ORTHO05D005738 8.7e-291 1003.4 706 68.4
Gohir.D06G092300 Gossypium hirsutum HOM05D004619 ORTHO05D005738 4.8e-289 997.7 706 68.4
RcHm_v2.0_Chr6g0306261 Rosa chinensis HOM05D004619 ORTHO05D005738 2.4e-288 995.3 721 66.9
Gorai.010G106300 Gossypium raimondii HOM05D004619 ORTHO05D005738 3.1e-288 995.0 706 68.4
Hma1.2p1_0049F.1_g028570 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 4.0e-288 994.6 710 67.5
COL.COLO4_20972 Corchorus olitorius HOM05D004619 ORTHO05D005738 9.0e-288 993.4 721 67.1
Nn8g39783 Nelumbo nucifera HOM05D004619 ORTHO05D005738 7.6e-287 990.3 726 66.7
FAN27G0819 Fragaria x ananassa HOM05D004619 ORTHO05D005738 2.9e-286 988.4 721 66.7
FvH4_2g35520 Fragaria vesca HOM05D004619 ORTHO05D005738 4.9e-286 987.6 721 66.7
Cfa013367 Carpinus fangiana HOM05D004619 ORTHO05D005738 1.9e-285 985.7 723 66.4
Thecc.09G045500 Theobroma cacao HOM05D004619 ORTHO05D005738 4.2e-285 984.6 721 66.7
CANSAT25G1337 Cannabis sativa HOM05D004619 ORTHO05D005738 1.6e-284 982.6 708 67.9
Lj8A581G22 Lonicera japonica HOM05D004619 ORTHO05D005738 1.5e-282 976.1 725 66.6
Eucgr.C00596 Eucalyptus grandis HOM05D004619 ORTHO05D005738 1.3e-281 973.0 711 67.5
Gohir.A06G092700 Gossypium hirsutum HOM05D004619 ORTHO05D005738 1.6e-281 972.6 706 67.6
FAN20G0141 Fragaria x ananassa HOM05D004619 ORTHO05D005738 5.3e-280 967.6 732 65.2
Lalb_Chr14g0362511 Lupinus albus HOM05D004619 ORTHO05D005738 2.1e-276 955.7 722 64.7
Solyc08g066580.4 Solanum lycopersicum HOM05D004619 ORTHO05D005738 5.6e-274 947.6 724 64.1
Medtr1g006690 Medicago truncatula HOM05D004619 ORTHO05D005738 7.4e-274 947.2 710 64.6
MBI01_g18389_MAGBIO Magnolia biondii HOM05D004619 ORTHO05D005738 2.1e-273 945.7 723 63.8
Aqoxy7G03899 Aquilegia oxysepala HOM05D004619 ORTHO05D005738 6.2e-273 944.1 721 64.5
Lj1g0001172 Lotus japonicus HOM05D004619 ORTHO05D005738 8.1e-273 943.7 715 64.8
Nitab4.5_0003794g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 1.4e-272 943.0 727 64.1
Sopen08g020420 Solanum pennellii HOM05D004619 ORTHO05D005738 2.4e-272 942.2 724 63.8
Glyma.17G193800 Glycine max HOM05D004619 ORTHO05D005738 2.2e-270 935.6 728 63.2
PSO210G5473 Papaver somniferum HOM05D004619 ORTHO05D005738 3.8e-270 934.9 714 63.9
Peaxi162Scf00227g00812 Petunia axillaris HOM05D004619 ORTHO05D005738 3.8e-270 934.9 724 64.4
arahy.Tifrunner.gnm1.ann1.CES4LM Arachis hypogaea HOM05D004619 ORTHO05D005738 4.9e-270 934.5 708 64.3
TPR.G24498 Trifolium pratense HOM05D004619 ORTHO05D005738 6.5e-270 934.1 708 64.0
arahy.Tifrunner.gnm1.ann1.Z9IJD2 Arachis hypogaea HOM05D004619 ORTHO05D005738 8.4e-270 933.7 708 64.0
PSO210G6185 Papaver somniferum HOM05D004619 ORTHO05D005738 1.1e-269 933.3 714 63.4
Nitab4.5_0001515g0010 Nicotiana tabacum HOM05D004619 ORTHO05D005738 1.4e-269 932.9 727 63.8
Sc23g0005210 Simmondsia chinensis HOM05D004619 ORTHO05D005738 1.2e-268 929.9 705 64.4
Cc08_g09590 Coffea canephora HOM05D004619 ORTHO05D005738 2.1e-268 929.1 722 63.7
HanXRQChr13g0402061 Helianthus annuus HOM05D004619 ORTHO05D005738 2.7e-268 928.7 725 62.9
Lsat_1_v5_gn_6_23120 Lactuca sativa HOM05D004619 ORTHO05D005738 1.0e-267 926.8 727 63.0
Ca_12754_v3 Cicer arietinum L. HOM05D004619 ORTHO05D005738 1.8e-267 926.0 707 63.5
DCAR_004468 Daucus carota HOM05D004619 ORTHO05D005738 3.0e-267 925.2 689 64.6
EL10Ac2g04016 Beta vulgaris HOM05D004619 ORTHO05D005738 5.3e-264 914.4 722 62.5
TAR636G2525 Trochodendron aralioides HOM05D004619 ORTHO05D005738 5.9e-263 911.0 656 67.2
SGA_v2.0_scaffold169G38654 Striga asiatica HOM05D004619 ORTHO05D005738 1.3e-262 909.8 723 61.8
Manes.16G075300 Manihot esculenta HOM05D004619 ORTHO05D005738 6.5e-262 907.5 727 63.1
CiPaw.07G204000 Carya illinoinensis HOM05D004619 ORTHO05D005738 8.5e-262 907.1 633 69.0
Migut.E01528 Erythranthe guttata HOM05D004619 ORTHO05D005738 1.4e-261 906.4 721 61.6
ECA233G0099 Erigeron canadensis HOM05D004619 ORTHO05D005738 2.7e-260 902.1 736 59.9
Rhsim07G0146900 Rhododendron simsii HOM05D004619 ORTHO05D005738 3.9e-259 898.3 722 62.9
Sed0007447 Sechium edule HOM05D004619 ORTHO05D005738 5.1e-259 897.9 723 62.1
CsaV3_2G030840 Cucumis sativus L. HOM05D004619 ORTHO05D005738 1.9e-258 896.0 721 61.3
CAN.G400.8 Capsicum annuum HOM05D004619 ORTHO05D005738 7.4e-258 894.0 675 64.6
ATR0705G091 Amborella trichopoda HOM05D004619 ORTHO05D005738 1.8e-256 889.4 714 59.9
Haze_21890 Corylus avellana HOM05D004619 ORTHO05D005738 3.1e-256 888.6 731 62.0
MSTRG.1660 Avicennia marina HOM05D004619 ORTHO05D005738 6.9e-256 887.5 723 61.3
SalBow1G6937 Salvia bowleyana HOM05D004619 ORTHO05D005738 9.0e-256 887.1 731 60.3
CDE02G4285 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.2e-254 882.5 720 60.7
PGR031G0242 Punica granatum HOM05D004619 ORTHO05D005738 6.5e-254 880.9 711 62.6
Sabra18G0044200 Salix brachista HOM05D004619 ORTHO05D005738 9.4e-253 877.1 629 67.2
Sabra18G0044100 Salix brachista HOM05D004619 ORTHO05D005738 5.1e-251 871.3 625 66.9
ClCG08G012210 Citrullus lanatus HOM05D004619 ORTHO05D005738 8.8e-251 870.5 714 60.4
Eucgr.C00551 Eucalyptus grandis HOM05D004619 ORTHO05D005738 5.5e-245 851.3 625 66.7
Phvul.001G074000 Phaseolus vulgaris HOM05D004619 ORTHO05D005738 9.4e-245 850.5 651 63.3
Os01g0746200 Oryza sativa ssp. japonica HOM05D004619 ORTHO05D005738 1.4e-243 846.7 731 57.7
AUR62039705 Chenopodium quinoa HOM05D004619 ORTHO05D005738 8.2e-241 837.4 589 67.9
Zm00001eb152980 Zea mays HOM05D004619 ORTHO05D005738 1.8e-240 836.3 734 56.9
Ah.10g035010 Amaranthus hybridus HOM05D004619 ORTHO05D005738 5.3e-240 834.7 706 58.5
MELO3C011139.2 Cucumis melo HOM05D004619 ORTHO05D005738 1.6e-239 833.2 727 58.3
HPP92_005572 Vanilla planifolia HOM05D004619 ORTHO05D005738 7.7e-239 830.9 720 56.9
vmacro05371 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 5.0e-238 828.2 989 47.7
Actinidia15739 Actinidia chinensis HOM05D004619 ORTHO05D005738 3.2e-237 825.5 704 59.4
Dinv27905 Davidia involucrata HOM05D004619 ORTHO05D005738 1.4e-235 820.1 541 71.7
Hma1.2p1_0049F.1_g028580 Hydrangea macrophylla HOM05D004619 ORTHO05D005738 1.9e-229 799.7 574 66.7
Psat6g038280 Pisum sativum HOM05D004619 ORTHO05D005738 8.8e-227 790.8 569 65.9
BcaC09g52090 Brassica carinata HOM05D004619 ORTHO05D005738 5.4e-224 781.6 381 99.7
AUR62009276 Chenopodium quinoa HOM05D004619 ORTHO05D005738 2.7e-223 779.2 705 56.9
Hund19512 Selenicereus undatus HOM05D004619 ORTHO05D005738 9.5e-221 770.8 856 48.8
vmacro23276 Vaccinium macrocarpon HOM05D004619 ORTHO05D005738 5.2e-203 711.8 983 44.4
SHI18685 Sapria himalayana HOM05D004619 ORTHO05D005738 8.3e-201 704.5 724 53.0
Potri.018G044300 Populus trichocarpa HOM05D004619 ORTHO05D005738 1.0e-182 644.4 453 68.2
Pp3c16_3750 Physcomitrium patens HOM05D004619 ORTHO05D005738 1.4e-179 634.0 748 45.2
Oeu031693.1 Olea europaea HOM05D004619 ORTHO05D005738 5.8e-170 602.1 487 61.6
Mapoly0014s0066 Marchantia polymorpha HOM05D004619 ORTHO05D005738 1.4e-160 570.9 704 44.5
AagrBONN_evm.TU.Sc2ySwM_368.2349 Anthoceros agrestis HOM05D004619 ORTHO05D005738 1.3e-145 521.2 626 44.7
VMungo0647G0418 Vigna mungo HOM05D004619 ORTHO05D005738 3.9e-142 509.6 362 65.5
Actinidia14677 Actinidia chinensis HOM05D004619 ORTHO05D005738 5.5e-128 462.6 446 53.8
Psat7g196840 Pisum sativum HOM05D004619 ORTHO05D005738 4.3e-96 356.7 279 60.9
SGA_v2.0_scaffold163G38073 Striga asiatica HOM05D004619 ORTHO05D005738 1.1e-88 332.0 254 63.4
Cpa.g.sc2198.1 Carica papaya HOM05D004619 ORTHO05D005738 3.3e-88 330.5 225 71.6
VMungo0647G1361 Vigna mungo HOM05D004619 ORTHO05D005738 4.6e-82 310.1 270 59.3
unitig_578.g16587 Utricularia gibba HOM05D004619 ORTHO05D005738 2.0e-77 294.7 290 53.4
unitig_578.g16586 Utricularia gibba HOM05D004619 ORTHO05D005738 3.5e-66 257.3 290 47.2
Cpa.g.c44012 Carica papaya HOM05D004619 ORTHO05D005738 1.4e-62 245.4 148 75.0
Actinidia14676 Actinidia chinensis HOM05D004619 ORTHO05D005738 4.6e-58 230.3 166 69.9
SMO146G0002 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 3.2e-43 181.0 261 41.8
Lj5g0023577 Lotus japonicus HOM05D004619 ORTHO05D005738 1.1e-38 166.0 154 55.2
SMO173G0047 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 5.3e-38 163.7 232 42.7
SMO173G0066 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.3e-36 159.1 260 37.7
CBR_g55392 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-32 145.6 169 43.2
BolC6t36187H Brassica oleracea HOM05D004619 ORTHO05D005738 1.8e-30 138.7 109 67.9
arahy.Tifrunner.gnm1.ann1.7I309S Arachis hypogaea HOM05D004619 ORTHO05D005738 1.3e-28 132.5 89 69.7
SEGI_12145 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 2.9e-28 131.3 114 54.4
arahy.Tifrunner.gnm1.ann1.VKWI5R Arachis hypogaea HOM05D004619 ORTHO05D005738 1.1e-27 129.4 84 72.6
SMO173G0051 Selaginella moellendorffii HOM05D004619 ORTHO05D005738 1.1e-27 129.4 154 45.5
BolC9t59437H Brassica oleracea HOM05D004619 ORTHO05D005738 1.9e-27 128.6 109 65.1
C09p66170 Brassica napus HOM05D004619 ORTHO05D005738 5.5e-27 127.1 109 64.2
arahy.Tifrunner.gnm1.ann1.2KYU87 Arachis hypogaea HOM05D004619 ORTHO05D005738 1.6e-26 125.6 84 71.4
FvH4_4g13810 Fragaria vesca HOM05D004619 ORTHO05D005738 2.2e-23 115.2 107 55.1
Cpa.g.sc78.2 Carica papaya HOM05D004619 ORTHO05D005738 1.4e-22 112.5 131 49.6
SEGI_32974 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 3.1e-22 111.3 98 54.1
arahy.Tifrunner.gnm1.ann1.EP17SZ Arachis hypogaea HOM05D004619 ORTHO05D005738 3.4e-21 107.8 74 71.6
Cpa.g.sc78.1 Carica papaya HOM05D004619 ORTHO05D005738 8.5e-20 103.2 71 63.4
Dinv23371 Davidia involucrata HOM05D004619 ORTHO05D005738 5.5e-19 100.5 97 54.6
Cre08.g383650 Chlamydomonas reinhardtii HOM05D004619 ORTHO05D005738 9.4e-19 99.8 617 21.4
BcaC08g43687 Brassica carinata HOM05D004619 ORTHO05D005738 1.2e-18 99.4 57 86.0
BcaB03g16865 Brassica carinata HOM05D004619 ORTHO05D005738 6.1e-18 97.1 89 60.7
A06p44050 Brassica napus HOM05D004619 ORTHO05D005738 6.1e-18 97.1 57 84.2
BraA06t27279Z Brassica rapa HOM05D004619 ORTHO05D005738 6.1e-18 97.1 57 84.2
Lsat_1_v5_gn_4_165860 Lactuca sativa HOM05D004619 ORTHO05D005738 1.8e-17 95.5 70 62.9
FvH4_6g10180 Fragaria vesca HOM05D004619 ORTHO05D003203 2.3e-17 95.1 66 66.7
Lsat_1_v5_gn_8_131800 Lactuca sativa HOM05D003157 ORTHO05D004447 1.1e-16 92.8 75 61.3
BcaC04g22550 Brassica carinata HOM05D004619 ORTHO05D032420 1.3e-15 89.4 74 67.6
FAN14G2999 Fragaria x ananassa HOM05D004619 ORTHO05D003203 1.3e-15 89.4 61 67.2
Lsat_1_v5_gn_8_1401 Lactuca sativa HOM05D004619 ORTHO05D005738 2.8e-15 88.2 58 67.2
BcaC05g28757 Brassica carinata HOM05D004619 ORTHO05D032420 1.5e-13 82.4 51 80.4
CDE08G0324 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 2.6e-13 81.6 64 64.1
SEGI_14473 Sequoiadendron giganteum HOM05D004619 ORTHO05D005738 5.9e-13 80.5 71 57.7
QL08p060719 Quercus lobata HOM05D004619 ORTHO05D005738 7.7e-13 80.1 55 65.5
Dinv23369 Davidia involucrata HOM05D004619 ORTHO05D005738 1.3e-12 79.3 52 71.2
CBR_g55391 Chara braunii HOM05D000019 ORTHO05D000002 6.5e-12 77.0 108 39.8
Dinv23370 Davidia involucrata HOM05D004619 ORTHO05D005738 1.4e-11 75.9 129 37.2
Lsat_1_v5_gn_6_18560 Lactuca sativa HOM05D000118 ORTHO05D005738 1.4e-11 75.9 53 62.3
CBR_g55394 Chara braunii HOM05D004619 ORTHO05D005738 2.5e-11 75.1 167 29.3
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 2.3e-09 68.6 43 74.4
Nn8g39123 Nelumbo nucifera HOM05D005233 ORTHO05D006308 2.0e-08 65.5 48 64.6
PRCOL_00003296 Prasinoderma coloniale HOM05D004619 ORTHO05D005738 2.6e-08 65.1 353 21.2
arahy.Tifrunner.gnm1.ann1.6B1VGR Arachis hypogaea HOM05D004619 ORTHO05D005738 5.7e-08 63.9 74 50.0
BolC7t40477H Brassica oleracea HOM05D048856 ORTHO05D042196 5.7e-08 63.9 63 54.0
Glyma.14G146000 Glycine max HOM05D004619 ORTHO05D005738 7.4e-08 63.5 71 47.9
C07p00260 Brassica napus HOM05D048856 ORTHO05D042196 6.3e-07 60.5 63 54.0
BcaC06g36757 Brassica carinata HOM05D003815 ORTHO05D004580 8.2e-07 60.1 47 68.1
CDE08G1138 Ceratophyllum demersum HOM05D004619 ORTHO05D005738 4.1e-06 57.8 42 61.9


User provided reference genes

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