Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 2113.6 1061 100.0
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 2111.3 1061 99.7
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 2002.6 1063 95.0
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1973.7 1274 81.4
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1958.0 1065 93.3
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1948.7 1071 91.9
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1936.4 1069 91.3
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1911.0 1068 90.6
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1896.7 1068 89.6
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1896.3 1069 90.0
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1741.5 1062 81.2
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1712.2 1101 79.7
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1576.2 1056 73.5
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1564.3 1056 73.0
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1561.6 1056 73.5
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1556.2 1057 72.8
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1550.8 1055 72.3
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1540.4 1059 71.8
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1535.4 1059 71.6
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1534.6 1056 71.2
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1530.4 1058 72.0
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1527.3 1055 71.8
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1524.6 1059 71.5
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1523.8 1058 71.1
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1521.1 1056 70.8
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1519.2 1056 71.4
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1516.1 1056 71.5
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1511.1 1057 71.5
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1505.7 1058 69.8
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1501.5 1056 70.2
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1499.2 1056 69.9
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1498.4 1055 69.6
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1496.5 1076 70.4
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1496.5 1076 70.4
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1494.9 1056 70.9
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1487.6 1056 69.2
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1487.2 1056 69.8
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1486.5 1121 66.3
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1485.3 1056 70.2
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1481.5 1056 69.8
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1480.3 1057 68.9
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1479.2 1067 69.6
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1476.8 1054 69.3
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1475.7 1063 69.4
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1474.9 1063 69.3
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1473.0 1040 70.9
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1472.6 1060 69.4
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1471.8 1056 67.7
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1471.1 1055 69.8
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1463.0 1056 69.3
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1460.7 1142 65.5
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1453.7 1056 68.8
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1450.3 1056 68.4
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1441.8 1061 67.8
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1438.7 1055 67.8
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1438.3 1147 63.7
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1436.0 1041 68.8
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1431.8 1053 68.5
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1431.0 1056 67.4
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1430.2 1046 66.9
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1426.0 1054 67.5
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1419.8 1054 66.4
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1419.1 1054 66.4
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1417.9 1053 68.0
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1417.1 1057 67.1
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1414.4 1054 65.9
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1414.1 1055 67.2
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1413.3 1055 67.1
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1409.8 1053 66.2
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1399.0 1052 66.2
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1393.3 1067 67.5
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1393.3 1057 65.4
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1390.6 980 70.9
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1389.0 961 71.0
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1388.6 1056 65.6
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1387.9 1056 65.2
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1382.9 1056 65.9
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1380.9 1132 62.6
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1379.8 1055 66.2
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1378.6 1062 65.0
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1370.1 1056 64.8
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1367.4 1062 64.4
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1366.3 1073 65.1
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1362.1 1054 66.0
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1354.7 1059 63.4
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1311.6 948 69.1
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1261.9 850 71.8
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1254.2 867 70.6
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1246.9 855 71.7
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1245.7 1055 60.4
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1209.5 802 73.2
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1114.4 790 68.6
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 0.0e+00 1102.8 1076 53.3
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 1.3e-306 1056.6 1059 52.4
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 2.6e-304 1048.9 788 66.9
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 3.9e-300 1035.0 958 56.9
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 8.2e-290 1000.7 521 93.1
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 6.1e-285 984.6 1078 50.3
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 7.8e-264 914.4 785 60.8
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 8.0e-261 904.4 948 53.6
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 1.0e-260 904.0 634 69.6
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 5.4e-257 891.7 482 89.4
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 1.7e-250 870.2 462 90.3
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 1.1e-249 867.5 462 90.0
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 2.1e-248 863.2 465 89.5
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 6.0e-248 861.7 508 84.1
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 1.3e-242 844.0 455 89.5
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 5.1e-239 832.0 487 84.4
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 2.1e-232 810.1 516 74.2
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 1.3e-231 807.4 660 61.4
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 1.4e-228 797.3 490 81.4
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 2.1e-205 720.3 470 71.9
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.1e-205 720.3 698 55.2
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 4.8e-205 719.2 465 78.1
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 9.3e-201 704.9 462 76.4
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 6.9e-196 688.7 449 72.8
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 3.7e-189 666.4 458 68.1
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 3.9e-183 646.4 452 67.9
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 6.5e-170 602.4 448 64.1
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 2.3e-154 550.8 428 64.5
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 2.6e-150 537.3 366 68.3
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 5.4e-148 529.6 366 68.3
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 2.5e-145 520.8 279 91.0
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 8.0e-144 515.8 400 65.8
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 1.1e-140 505.4 1114 32.3
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 8.6e-138 495.7 405 62.7
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 4.4e-134 483.4 613 46.3
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 7.1e-116 422.9 238 84.0
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 7.3e-113 412.9 289 68.9
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 7.6e-110 402.9 271 72.7
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 7.4e-105 386.3 244 76.2
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 4.8e-104 383.6 215 84.2
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 1.2e-102 379.0 265 70.6
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 8.4e-101 372.9 235 77.4
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 3.7e-88 330.9 317 55.8
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 3.1e-71 274.6 155 81.3
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 1.0e-58 233.0 285 48.1
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 2.7e-54 218.4 206 55.3
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 6.3e-48 197.2 206 53.9
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.4e-47 195.3 156 59.0
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 1.1e-44 186.4 180 58.9
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 1.4e-42 179.5 122 63.9
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 1.6e-38 166.0 155 56.1
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 6.6e-37 160.6 110 72.7
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 1.4e-34 152.9 179 49.2
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 8.3e-32 143.7 106 69.8
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 3.2e-31 141.7 97 73.2
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 4.6e-30 137.9 85 72.9
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 2.5e-28 132.1 83 72.3
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 2.9e-24 118.6 137 50.4
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 3.7e-24 118.2 85 63.5
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 1.4e-23 116.3 137 51.8
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 3.5e-22 111.7 85 61.2
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 2.3e-21 109.0 55 87.3
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 1.2e-17 96.7 62 75.8
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 6.4e-16 90.9 59 66.1
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 1.9e-15 89.4 84 52.4
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 5.4e-15 87.8 74 59.5
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 5.4e-15 87.8 80 55.0
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 3.5e-14 85.1 53 77.4
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 1.7e-13 82.8 76 59.2
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 1.5e-12 79.7 75 58.7
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 2.5e-12 79.0 57 57.9
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 5.6e-12 77.8 74 54.1
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 6.2e-11 74.3 56 55.4
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 8.1e-11 73.9 41 80.5
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 8.9e-10 70.5 79 50.6
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 1.7e-08 66.2 48 68.8
AL5G20110 Arabidopsis lyrata HOM05D004198 ORTHO05D080677 5.4e-07 61.2 38 76.3
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 7.1e-07 60.8 44 59.1


User provided reference genes

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