Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C01p02120 Brassica napus HOM05D005480 ORTHO05D006735 3.4e-198 695.3 490 100.0
BolC1t00204H Brassica oleracea HOM05D005480 ORTHO05D006735 1.1e-191 673.7 490 98.0
BraA01t00184Z Brassica rapa HOM05D005480 ORTHO05D006735 2.9e-181 639.0 493 81.3
A01p01950 Brassica napus HOM05D005480 ORTHO05D006735 1.1e-180 637.1 493 81.5
BcaNung03510 Brassica carinata HOM05D005480 ORTHO05D006735 1.5e-174 616.7 499 87.4
Sp7g34650 Schrenkiella parvula HOM05D005480 ORTHO05D006735 2.6e-153 546.2 518 70.3
Thhalv10025060m.g Eutrema salsugineum HOM05D005480 ORTHO05D006735 2.6e-145 519.6 491 71.3
Carub.0007s0332 Capsella rubella HOM05D005480 ORTHO05D006735 2.2e-136 490.0 528 64.0
AT4G37130 Arabidopsis thaliana HOM05D005480 ORTHO05D006735 4.1e-135 485.7 424 70.3
AL7G13910 Arabidopsis lyrata HOM05D005480 ORTHO05D006735 7.0e-135 485.0 440 69.1
CARHR245380 Cardamine hirsuta HOM05D005480 ORTHO05D006735 6.8e-130 468.4 522 67.2
BcaB03g12366 Brassica carinata HOM05D005480 ORTHO05D006735 1.6e-126 457.2 506 60.3
BolC3t20222H Brassica oleracea HOM05D005480 ORTHO05D006735 3.5e-126 456.1 509 61.1
BcaC01g00434 Brassica carinata HOM05D005480 ORTHO05D006735 5.2e-122 442.2 520 62.3
C03p79710 Brassica napus HOM05D005480 ORTHO05D006735 5.2e-122 442.2 520 62.3
THA.LOC104819823 Tarenaya hassleriana HOM05D005480 ORTHO05D006735 1.7e-120 437.2 404 68.8
Aa31LG6G13860 Aethionema arabicum HOM05D005480 ORTHO05D006735 4.9e-120 435.6 329 69.9
A08p22500 Brassica napus HOM05D005480 ORTHO05D006735 1.9e-119 433.7 507 59.2
BraA08t34205Z Brassica rapa HOM05D005480 ORTHO05D006735 4.1e-119 432.6 501 60.7
Thecc.01G048100 Theobroma cacao HOM05D005480 ORTHO05D006735 2.1e-115 420.2 509 62.3
Eucgr.H01972 Eucalyptus grandis HOM05D005480 ORTHO05D006735 4.4e-113 412.5 514 59.7
PGSC0003DMG400010074 Solanum tuberosum HOM05D005480 ORTHO05D006735 2.9e-112 409.8 444 60.8
Solyc02g090230.4 Solanum lycopersicum HOM05D005480 ORTHO05D006735 6.4e-112 408.7 444 61.5
CSS0014684 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 8.4e-112 408.3 429 62.2
Duzib187G0998 Durio zibethinus HOM05D005480 ORTHO05D006735 8.4e-112 408.3 510 62.9
Sopen02g034920 Solanum pennellii HOM05D005480 ORTHO05D006735 1.1e-111 407.9 443 61.6
CSS0005424 Camellia sinensis var. sinensis HOM05D005480 ORTHO05D006735 5.4e-111 405.6 429 64.1
CANSAT01G1679 Cannabis sativa HOM05D005480 ORTHO05D006735 9.2e-111 404.8 434 61.5
Glyma.01G181500 Glycine max HOM05D005480 ORTHO05D006735 2.7e-110 403.3 441 56.0
Dinv26753 Davidia involucrata HOM05D005480 ORTHO05D006735 4.6e-110 402.5 330 67.0
Gohir.D12G090600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 4.6e-110 402.5 444 56.8
Actinidia12077 Actinidia chinensis HOM05D005480 ORTHO05D006735 3.0e-109 399.8 496 66.1
Lj7A20T61 Lonicera japonica HOM05D005480 ORTHO05D006735 3.9e-109 399.4 377 63.1
MD02G1161300 Malus domestica HOM05D005480 ORTHO05D006735 5.1e-109 399.1 436 56.4
Sed0026694 Sechium edule HOM05D005480 ORTHO05D006735 1.1e-108 397.9 435 55.2
QL06p043724 Quercus lobata HOM05D005480 ORTHO05D006735 1.5e-108 397.5 529 56.7
Potri.007G036600 Populus trichocarpa HOM05D005480 ORTHO05D006735 3.3e-108 396.4 433 59.8
Gohir.A12G068600 Gossypium hirsutum HOM05D005480 ORTHO05D006735 4.3e-108 396.0 517 56.7
Lj7A18T44 Lonicera japonica HOM05D005480 ORTHO05D006735 9.6e-108 394.8 377 62.3
Duzib147G0741 Durio zibethinus HOM05D005480 ORTHO05D006735 1.2e-107 394.4 451 56.5
Gorai.008G072400 Gossypium raimondii HOM05D005480 ORTHO05D006735 1.6e-107 394.0 507 61.9
Lj2g0021055 Lotus japonicus HOM05D005480 ORTHO05D006735 1.6e-107 394.0 333 66.1
CiPaw.01G026500 Carya illinoinensis HOM05D005480 ORTHO05D006735 2.1e-107 393.7 509 56.8
FAN19G1500 Fragaria x ananassa HOM05D005480 ORTHO05D006735 2.8e-107 393.3 317 66.9
Phvul.002G022500 Phaseolus vulgaris HOM05D005480 ORTHO05D006735 2.8e-107 393.3 400 63.5
Dinv39906 Davidia involucrata HOM05D005480 ORTHO05D006735 4.7e-107 392.5 440 56.6
Glyma.11G059700 Glycine max HOM05D005480 ORTHO05D006735 4.7e-107 392.5 499 62.7
Manes.13G130100 Manihot esculenta HOM05D005480 ORTHO05D006735 6.2e-107 392.1 399 62.2
DCAR_021432 Daucus carota HOM05D005480 ORTHO05D006735 8.1e-107 391.7 323 66.9
Medtr5g018390 Medicago truncatula HOM05D005480 ORTHO05D006735 1.1e-106 391.3 454 55.9
VMungo1215G2543 Vigna mungo HOM05D005480 ORTHO05D006735 1.1e-106 391.3 400 63.5
FvH4_1g14810 Fragaria vesca HOM05D005480 ORTHO05D006735 2.4e-106 390.2 316 66.5
FAN26G2127 Fragaria x ananassa HOM05D005480 ORTHO05D006735 5.2e-106 389.0 316 69.0
CsaV3_6G042900 Cucumis sativus L. HOM05D005480 ORTHO05D006735 6.8e-106 388.7 436 52.8
PGR102G0042 Punica granatum HOM05D005480 ORTHO05D006735 6.8e-106 388.7 511 57.7
Ciclev10025487m.g Citrus clementina HOM05D005480 ORTHO05D006735 1.5e-105 387.5 336 64.3
MELO3C007529.2 Cucumis melo HOM05D005480 ORTHO05D006735 1.5e-105 387.5 446 52.0
Lalb_Chr09g0322931 Lupinus albus HOM05D005480 ORTHO05D006735 2.6e-105 386.7 524 59.7
TAR381G0420 Trochodendron aralioides HOM05D005480 ORTHO05D006735 5.8e-105 385.6 323 65.6
Ah.02g123950 Amaranthus hybridus HOM05D005480 ORTHO05D006735 7.6e-105 385.2 325 64.3
RcHm_v2.0_Chr2g0103771 Rosa chinensis HOM05D005480 ORTHO05D006735 7.6e-105 385.2 430 60.5
Rhsim02G0168000 Rhododendron simsii HOM05D005480 ORTHO05D006735 1.3e-104 384.4 332 62.7
MD15G1275400 Malus domestica HOM05D005480 ORTHO05D006735 2.9e-104 383.3 510 58.4
TPR.G11349 Trifolium pratense HOM05D005480 ORTHO05D006735 2.9e-104 383.3 508 54.5
MSTRG.23794 Avicennia marina HOM05D005480 ORTHO05D006735 3.8e-104 382.9 379 66.8
FAN28G0426 Fragaria x ananassa HOM05D005480 ORTHO05D006735 3.8e-104 382.9 417 59.0
Cc07_g05560 Coffea canephora HOM05D005480 ORTHO05D006735 1.1e-103 381.3 330 64.2
Migut.H00485 Erythranthe guttata HOM05D005480 ORTHO05D006735 1.4e-103 380.9 384 66.4
FAN23G2977 Fragaria x ananassa HOM05D005480 ORTHO05D006735 1.9e-103 380.6 402 62.7
Prupe.7G142300 Prunus persica HOM05D005480 ORTHO05D006735 1.9e-103 380.6 330 64.2
BcaB03g12364 Brassica carinata HOM05D005480 ORTHO05D006735 4.2e-103 379.4 514 52.7
TAR625G1062 Trochodendron aralioides HOM05D005480 ORTHO05D006735 9.3e-103 378.3 324 65.1
Hund13586 Selenicereus undatus HOM05D005480 ORTHO05D006735 4.6e-102 375.9 333 61.9
Sc03g0001260 Simmondsia chinensis HOM05D005480 ORTHO05D006735 7.8e-102 375.2 331 63.4
HanXRQChr04g0123741 Helianthus annuus HOM05D005480 ORTHO05D006735 1.3e-101 374.4 386 64.0
Hma1.2p1_0546F.1_g176180 Hydrangea macrophylla HOM05D005480 ORTHO05D006735 2.3e-101 373.6 429 56.4
Nn6g32121 Nelumbo nucifera HOM05D005480 ORTHO05D006735 3.9e-101 372.9 440 61.6
ECA232G3160 Erigeron canadensis HOM05D005480 ORTHO05D006735 6.6e-101 372.1 376 59.3
PSO170G5089 Papaver somniferum HOM05D005480 ORTHO05D006735 6.6e-101 372.1 338 62.1
Aqoxy5G01417 Aquilegia oxysepala HOM05D005480 ORTHO05D006735 2.5e-100 370.2 436 59.2
PSO210G7251 Papaver somniferum HOM05D005480 ORTHO05D006735 2.5e-100 370.2 440 60.0
Psat2g164160 Pisum sativum HOM05D005480 ORTHO05D006735 3.3e-100 369.8 319 63.9
ClCG01G016580 Citrullus lanatus HOM05D005480 ORTHO05D006735 4.3e-100 369.4 485 47.6
ATR0733G143 Amborella trichopoda HOM05D005480 ORTHO05D006735 3.6e-99 366.3 323 61.3
arahy.Tifrunner.gnm1.ann1.E9URZA Arachis hypogaea HOM05D005480 ORTHO05D006735 3.1e-98 363.2 398 63.8
SGA_v2.0_scaffold15G07231 Striga asiatica HOM05D005480 ORTHO05D006735 4.0e-98 362.8 334 61.4
CDE01G0732 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 4.4e-97 359.4 434 54.8
Lsat_1_v5_gn_4_179460 Lactuca sativa HOM05D005480 ORTHO05D006735 3.8e-96 356.3 334 65.0
CDE02G2721 Ceratophyllum demersum HOM05D005480 ORTHO05D006735 7.1e-95 352.1 295 62.7
Peaxi162Scf00993g00022 Petunia axillaris HOM05D005480 ORTHO05D006735 5.1e-93 345.9 410 57.3
COL.COLO4_11327 Corchorus olitorius HOM05D005480 ORTHO05D006735 6.6e-93 345.5 409 62.1
CAN.G836.34 Capsicum annuum HOM05D005480 ORTHO05D006735 1.3e-91 341.3 302 64.6
Nitab4.5_0001014g0070 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.3e-91 341.3 281 67.6
Cfa004218 Carpinus fangiana HOM05D005480 ORTHO05D006735 4.8e-91 339.3 344 58.7
Nitab4.5_0000108g0300 Nicotiana tabacum HOM05D005480 ORTHO05D006735 1.4e-90 337.8 281 68.0
vmacro05295 Vaccinium macrocarpon HOM05D005480 ORTHO05D006735 9.0e-90 335.1 285 64.6
unitig_899.g14972 Utricularia gibba HOM05D005480 ORTHO05D006735 6.4e-88 328.9 364 52.2
MBI16_g19897_MAGBIO Magnolia biondii HOM05D005480 ORTHO05D006735 4.2e-87 326.2 414 50.0
AUR62003828 Chenopodium quinoa HOM05D005480 ORTHO05D006735 1.3e-85 321.2 280 64.3
SalBow1G5517 Salvia bowleyana HOM05D006685 ORTHO05D008244 3.9e-85 319.7 283 64.7
Sabra07G0032600 Salix brachista HOM05D005480 ORTHO05D006735 1.5e-84 317.8 293 62.1
Os09g0453500 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 4.3e-84 316.2 340 51.2
Oeu003952.2 Olea europaea HOM05D005480 ORTHO05D006735 1.3e-83 314.7 569 41.3
SHI08751 Sapria himalayana HOM05D005480 ORTHO05D006735 4.8e-83 312.8 374 55.6
Zm00001eb314700 Zea mays HOM05D005480 ORTHO05D006735 2.7e-78 297.0 317 51.1
Zm00001eb100530 Zea mays HOM05D005480 ORTHO05D006735 4.6e-78 296.2 315 50.8
GSVIVG01005079001 Vitis vinifera HOM05D005480 ORTHO05D006735 3.7e-75 286.6 240 63.8
Haze_15193 Corylus avellana HOM05D005480 ORTHO05D006735 3.1e-74 283.5 305 59.7
Lalb_Chr05g0213141 Lupinus albus HOM05D005480 ORTHO05D006735 6.5e-72 275.8 255 58.4
AUR62001975 Chenopodium quinoa HOM05D005480 ORTHO05D006735 4.2e-71 273.1 363 52.6
Ca_24802_v3 Cicer arietinum L. HOM05D005480 ORTHO05D006735 4.6e-70 269.6 363 54.3
AagrBONN_evm.TU.Sc2ySwM_117.4106 Anthoceros agrestis HOM05D005480 ORTHO05D006735 1.3e-69 268.1 332 47.6
Mapoly0027s0041 Marchantia polymorpha HOM05D005480 ORTHO05D006735 7.7e-65 252.3 321 44.9
arahy.Tifrunner.gnm1.ann1.HXIH5S Arachis hypogaea HOM05D005480 ORTHO05D006735 8.5e-64 248.8 284 55.3
Pp3c24_6760 Physcomitrium patens HOM05D005480 ORTHO05D006735 1.2e-62 245.0 344 43.3
SEGI_40098 Sequoiadendron giganteum HOM05D005480 ORTHO05D006735 2.6e-52 210.7 222 55.0
HPP92_016040 Vanilla planifolia HOM05D005480 ORTHO05D006735 3.3e-52 210.3 204 52.5
Ah.03g144040 Amaranthus hybridus HOM05D005480 ORTHO05D006735 9.1e-50 202.2 234 49.6
CBR_g66690 Chara braunii HOM05D005480 ORTHO05D006735 2.0e-49 201.1 300 40.7
SGA_v2.0_scaffold135G34951 Striga asiatica HOM05D005480 ORTHO05D006735 7.7e-49 199.1 407 40.5
Os03g0765400 Oryza sativa ssp. japonica HOM05D005480 ORTHO05D006735 1.6e-46 191.4 307 42.0
Mapoly0016s0112 Marchantia polymorpha HOM05D005480 ORTHO05D006735 5.3e-42 176.4 285 37.5
Psat5g148720 Pisum sativum HOM05D005480 ORTHO05D006735 4.8e-35 153.3 171 56.1
HPP92_016039 Vanilla planifolia HOM05D005480 ORTHO05D006735 6.6e-24 116.3 69 81.2
Cpa.g.c44085 Carica papaya HOM05D005480 ORTHO05D006735 3.0e-21 107.5 206 42.2
Sabra07G0033400 Salix brachista HOM05D005480 ORTHO05D006735 1.5e-20 105.1 154 47.4
Sabra07G0032900 Salix brachista HOM05D005480 ORTHO05D006735 7.5e-20 102.8 154 46.8
Sabra07G0033100 Salix brachista HOM05D005480 ORTHO05D006735 7.5e-20 102.8 154 46.8
Ah.03g144030 Amaranthus hybridus HOM05D005480 ORTHO05D006735 2.3e-16 91.3 155 47.7
BcaC02g10502 Brassica carinata HOM05D005480 ORTHO05D006735 2.0e-12 78.2 45 82.2
C04p28170 Brassica napus HOM05D005480 ORTHO05D006735 2.0e-12 78.2 45 82.2
BolC4t24360H Brassica oleracea HOM05D005480 ORTHO05D006735 2.0e-12 78.2 45 82.2
Cre16.g685217 Chlamydomonas reinhardtii HOM05D005480 ORTHO05D006735 4.4e-12 77.0 259 26.6
C04p33290 Brassica napus HOM05D005480 ORTHO05D006735 3.2e-10 70.9 59 64.4
BolC4t24894H Brassica oleracea HOM05D005480 ORTHO05D006735 2.3e-08 64.7 46 73.9
PRCOL_00002206 Prasinoderma coloniale HOM05D005480 ORTHO05D006735 5.0e-08 63.5 321 23.1
CBR_g66696 Chara braunii HOM05D005480 ORTHO05D006735 6.6e-08 63.2 62 46.8


User provided reference genes

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