Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraSC25t45848Z Brassica rapa HOM05D000806 ORTHO05D007429 3.3e-80 301.6 147 100.0
A06p23190 Brassica napus HOM05D000806 ORTHO05D007429 1.7e-76 289.3 141 100.0
C09p29600 Brassica napus HOM05D000806 ORTHO05D007429 1.7e-76 289.3 141 100.0
C09p40230 Brassica napus HOM05D000806 ORTHO05D007429 1.7e-76 289.3 141 100.0
BraSC25t45866Z Brassica rapa HOM05D000806 ORTHO05D007429 1.7e-76 289.3 141 100.0
BraSC59t46591Z Brassica rapa HOM05D000806 ORTHO05D007429 1.7e-76 289.3 141 100.0
BolC9t56915H Brassica oleracea HOM05D000806 ORTHO05D007429 2.9e-76 288.5 141 99.3
BraSC103t45466Z Brassica rapa HOM05D000806 ORTHO05D007429 3.8e-76 288.1 141 99.3
BolSC29t60467H Brassica oleracea HOM05D000806 ORTHO05D007429 1.1e-75 286.6 141 99.3
BolSC35t60646H Brassica oleracea HOM05D000806 ORTHO05D007429 1.1e-75 286.6 141 99.3
BolSC35t60750H Brassica oleracea HOM05D000806 ORTHO05D007429 1.1e-75 286.6 141 99.3
BolSC49t61183H Brassica oleracea HOM05D000806 ORTHO05D007429 1.1e-75 286.6 141 99.3
AL2G20666 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 6.7e-73 277.3 141 94.3
ATCG00520 Arabidopsis thaliana HOM05D000806 ORTHO05D007429 6.7e-73 277.3 141 94.3
CARHR282100 Cardamine hirsuta HOM05D000806 ORTHO05D007429 6.7e-73 277.3 141 94.3
Gohir.A07G163690 Gossypium hirsutum HOM05D000806 ORTHO05D007429 4.9e-68 261.2 141 88.7
Duzib198G0003 Durio zibethinus HOM05D000806 ORTHO05D002324 6.5e-68 260.8 141 88.7
Gohir.A07G163672 Gossypium hirsutum HOM05D000806 ORTHO05D007429 6.5e-68 260.8 141 88.7
Sed0015006 Sechium edule HOM05D000806 ORTHO05D007429 5.5e-67 257.7 141 87.9
Hma1.2p1_0035F.1_g021940 Hydrangea macrophylla HOM05D000806 ORTHO05D007429 7.1e-67 257.3 141 86.5
Nn010s41435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.6e-66 256.1 141 87.2
Nn265s45955 Nelumbo nucifera HOM05D000806 ORTHO05D007429 1.6e-66 256.1 141 87.2
BraSC140t45575Z Brassica rapa HOM05D000806 ORTHO05D007429 2.1e-66 255.8 126 99.2
PGR111G0079 Punica granatum HOM05D000806 ORTHO05D007429 6.0e-66 254.2 141 87.2
MELO3C027107.2 Cucumis melo HOM05D000806 ORTHO05D007429 1.3e-65 253.1 141 85.8
Eucgr.E02608 Eucalyptus grandis HOM05D000806 ORTHO05D007429 4.3e-64 248.1 141 85.8
CAN.G3.24 Capsicum annuum HOM05D000806 ORTHO05D007429 5.7e-64 247.7 141 83.7
PSO548G0038 Papaver somniferum HOM05D000806 ORTHO05D007429 7.4e-64 247.3 141 84.4
Thhalv10010960m.g Eutrema salsugineum HOM05D000806 ORTHO05D007429 1.4e-62 243.0 141 85.1
DCAR_032495 Daucus carota HOM05D000806 ORTHO05D007429 1.8e-62 242.7 141 83.0
HanXRQChr01g0020361 Helianthus annuus HOM05D000806 ORTHO05D007429 4.1e-62 241.5 141 83.0
HanXRQChr10g0283551 Helianthus annuus HOM05D000806 ORTHO05D007429 4.1e-62 241.5 141 83.0
HanXRQChr10g0289261 Helianthus annuus HOM05D000806 ORTHO05D007429 4.1e-62 241.5 141 83.0
HanXRQChr10g0318201 Helianthus annuus HOM05D000806 ORTHO05D007429 4.1e-62 241.5 141 83.0
HanXRQChr11g0326821 Helianthus annuus HOM05D000806 ORTHO05D007429 4.1e-62 241.5 141 83.0
HanXRQCPg0580031 Helianthus annuus HOM05D000806 ORTHO05D007429 4.1e-62 241.5 141 83.0
RcHm_v2.0_Chr5g0042981 Rosa chinensis HOM05D000806 ORTHO05D007429 9.0e-62 240.4 141 83.7
Potri.013G162400 Populus trichocarpa HOM05D000806 ORTHO05D007429 1.2e-61 240.0 141 82.3
RcHm_v2.0_CPg0502091 Rosa chinensis HOM05D000806 ORTHO05D007429 1.5e-61 239.6 141 83.7
Lj2P1237T60 Lonicera japonica HOM05D000806 ORTHO05D007429 3.4e-61 238.4 141 83.0
Potri.016G094067 Populus trichocarpa HOM05D000806 ORTHO05D007429 6.1e-58 227.6 133 82.0
Migut.H01166 Erythranthe guttata HOM05D000806 ORTHO05D007429 7.9e-58 227.3 127 85.8
Migut.H01167 Erythranthe guttata HOM05D000806 ORTHO05D007429 7.9e-58 227.3 127 85.8
HanXRQChr16g0528981 Helianthus annuus HOM05D000806 ORTHO05D007429 5.7e-56 221.1 127 83.5
BolSC46t61000H Brassica oleracea HOM05D000806 ORTHO05D007429 1.3e-55 219.9 112 95.5
Hund28839 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.2e-55 219.2 141 78.0
Hund29829 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.2e-55 219.2 141 78.0
EL10Ac4g09266 Beta vulgaris HOM05D000806 ORTHO05D007429 3.8e-52 208.4 141 73.0
Peaxi162Scf00021g00088 Petunia axillaris HOM05D000806 ORTHO05D007429 3.8e-52 208.4 141 74.5
Hund28749 Selenicereus undatus HOM05D000806 ORTHO05D007429 8.5e-52 207.2 141 73.8
Hund31110 Selenicereus undatus HOM05D000806 ORTHO05D007429 8.5e-52 207.2 141 73.8
SEGI_09545 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 4.2e-51 204.9 141 71.6
Hund03830 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.3e-49 199.1 141 71.6
Gohir.A07G166934 Gossypium hirsutum HOM05D000806 ORTHO05D007429 4.4e-48 194.9 106 87.7
Nn010s41444 Nelumbo nucifera HOM05D000806 ORTHO05D007429 3.7e-47 191.8 134 71.6
Nitab4.5_0007680g0030 Nicotiana tabacum HOM05D000806 ORTHO05D007429 2.0e-45 186.0 141 68.1
Lalb_Chr23g0274521 Lupinus albus HOM05D000806 ORTHO05D007429 2.9e-44 182.2 141 67.4
AUR62004684 Chenopodium quinoa HOM05D000806 ORTHO05D002320 8.5e-44 180.6 114 77.2
Lsat_1_v5_gn_9_43721 Lactuca sativa HOM05D000806 ORTHO05D007429 1.1e-43 180.3 141 68.1
HanXRQChr09g0257581 Helianthus annuus HOM05D000806 ORTHO05D007429 1.9e-43 179.5 110 79.1
Gohir.D10G105733 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.2e-42 176.8 129 69.8
Gorai.011G115400 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.2e-42 176.8 111 79.3
Hund28451 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.6e-42 176.4 100 84.0
LjContig00318g0003161 Lotus japonicus HOM05D000806 ORTHO05D007429 7.4e-40 167.5 137 58.4
HanXRQChr08g0210351 Helianthus annuus HOM05D000806 ORTHO05D007429 1.3e-39 166.8 98 83.7
Hund19837 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.4e-38 163.3 141 60.3
BolSC46t61035H Brassica oleracea HOM05D000806 ORTHO05D007429 4.5e-37 158.3 76 98.7
BolSC47t61097H Brassica oleracea HOM05D000806 ORTHO05D007429 4.5e-37 158.3 76 98.7
HanXRQChr02g0044901 Helianthus annuus HOM05D000806 ORTHO05D007429 5.9e-37 157.9 121 69.4
AL2G21550 Arabidopsis lyrata HOM05D000806 ORTHO05D007429 2.2e-36 156.0 76 97.4
Sc03g0009990 Simmondsia chinensis HOM05D000806 ORTHO05D007429 5.0e-36 154.8 86 83.7
Hund22773 Selenicereus undatus HOM05D000806 ORTHO05D007429 2.5e-35 152.5 141 60.3
MCO14G322 Micromonas commoda HOM05D000806 ORTHO05D007429 3.2e-35 152.1 137 49.6
Gorai.004G061100 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.6e-34 149.8 96 76.0
Medtr4g034770 Medicago truncatula HOM05D000806 ORTHO05D002320 3.6e-34 148.7 142 49.3
Nitab4.5_0009663g0060 Nicotiana tabacum HOM05D000806 ORTHO05D007429 3.6e-34 148.7 131 58.8
Peaxi162Scf00041g00229 Petunia axillaris HOM05D000806 ORTHO05D007429 1.2e-32 143.7 76 88.2
Ah.10g027160 Amaranthus hybridus HOM05D000806 ORTHO05D002324 3.3e-32 142.1 76 85.5
QL93p1043_0001 Quercus lobata HOM05D000806 ORTHO05D007429 3.3e-32 142.1 76 86.8
Sc22g0003430 Simmondsia chinensis HOM05D000806 ORTHO05D007429 3.3e-32 142.1 76 86.8
Gohir.A12G124900 Gossypium hirsutum HOM05D000806 ORTHO05D007429 5.7e-32 141.4 76 88.2
Medtr0002s0680 Medicago truncatula HOM05D000806 ORTHO05D007429 9.7e-32 140.6 141 53.9
TAR633G2212 Trochodendron aralioides HOM05D000890 ORTHO05D000697 1.3e-31 140.2 126 61.1
HanXRQChr02g0041571 Helianthus annuus HOM05D000806 ORTHO05D007429 2.8e-31 139.0 76 84.2
HanXRQChr10g0284241 Helianthus annuus HOM05D000806 ORTHO05D007429 2.8e-31 139.0 76 84.2
HanXRQChr13g0404911 Helianthus annuus HOM05D000806 ORTHO05D007429 2.8e-31 139.0 76 84.2
VMungo0586G0001 Vigna mungo HOM05D000806 ORTHO05D007429 6.3e-31 137.9 143 55.2
EL10Ac6g15047 Beta vulgaris HOM05D000806 ORTHO05D002324 2.4e-30 136.0 76 82.9
Nn3g16863 Nelumbo nucifera HOM05D000806 ORTHO05D007429 2.0e-29 132.9 81 79.0
Eucgr.I02538 Eucalyptus grandis HOM05D000806 ORTHO05D007429 2.7e-29 132.5 76 82.9
SMO086G0044 Selaginella moellendorffii HOM05D000806 ORTHO05D007429 3.5e-29 132.1 139 50.4
Haze_07716 Corylus avellana HOM05D000806 ORTHO05D007429 5.9e-29 131.3 80 81.2
HanXRQChr11g0345151 Helianthus annuus HOM05D000806 ORTHO05D007429 7.7e-29 131.0 73 82.2
Phvul.002G278112 Phaseolus vulgaris HOM05D000806 ORTHO05D007429 1.0e-28 130.6 130 56.2
Gohir.D11G225901 Gossypium hirsutum HOM05D000806 ORTHO05D007429 1.5e-27 126.7 77 76.6
CDE02G2600 Ceratophyllum demersum HOM05D000806 ORTHO05D002320 2.5e-27 125.9 70 84.3
Gorai.007G243500 Gossypium raimondii HOM05D000806 ORTHO05D007429 4.2e-27 125.2 84 72.6
HanXRQChr15g0474091 Helianthus annuus HOM05D000806 ORTHO05D007429 2.7e-26 122.5 76 76.3
BolSC29t60589H Brassica oleracea HOM05D000806 ORTHO05D007429 1.0e-25 120.6 60 98.3
GSVIVG01030619001 Vitis vinifera HOM05D000806 ORTHO05D007429 4.0e-25 118.6 143 49.7
SEGI_10580 Sequoiadendron giganteum HOM05D000580 ORTHO05D001362 6.8e-25 117.9 83 68.7
BolC9t55821H Brassica oleracea HOM05D000806 ORTHO05D007429 2.0e-24 116.3 60 93.3
SEGI_20028 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 2.0e-24 116.3 71 73.2
SEGI_23528 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 2.0e-24 116.3 75 69.3
EL10Ac9g20703 Beta vulgaris HOM05D000806 ORTHO05D007429 2.6e-24 115.9 98 57.1
SEGI_09273 Sequoiadendron giganteum HOM05D000806 ORTHO05D007429 9.8e-24 114.0 69 73.9
Gorai.012G112600 Gossypium raimondii HOM05D000806 ORTHO05D007429 6.3e-23 111.3 142 50.0
SEGI_39120 Sequoiadendron giganteum HOM05D000806 ORTHO05D002324 2.3e-20 102.8 70 68.6
Oeu062853.1 Olea europaea HOM05D000806 ORTHO05D007429 2.9e-20 102.4 132 48.5
unitig_91.g26508 Utricularia gibba HOM05D000806 ORTHO05D002320 3.8e-20 102.1 123 48.0
Gohir.1Z049999 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.1e-19 100.5 54 87.0
Dinv26731 Davidia involucrata HOM05D001133 ORTHO05D000941 1.5e-19 100.1 53 86.8
Dinv29307 Davidia involucrata HOM05D001133 ORTHO05D000941 1.5e-19 100.1 53 86.8
Sopen07g012430 Solanum pennellii HOM05D000004 ORTHO05D002324 1.5e-19 100.1 53 86.8
CsaV3_UNG209270 Cucumis sativus L. HOM05D000806 ORTHO05D007429 1.9e-19 99.8 53 88.7
Gohir.D01G102333 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.9e-19 99.8 104 55.8
MD15G1388400 Malus domestica HOM05D000806 ORTHO05D007429 2.5e-19 99.4 62 79.0
Solyc00g500066.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 2.5e-19 99.4 54 83.3
Solyc05g016120.2 Solanum lycopersicum HOM05D001387 ORTHO05D001250 2.5e-19 99.4 111 50.5
Ah.10g027380 Amaranthus hybridus HOM05D000806 ORTHO05D007429 4.2e-19 98.6 53 83.0
Cfa021575 Carpinus fangiana HOM05D000806 ORTHO05D002324 5.5e-19 98.2 53 86.8
Sabra10G0056300 Salix brachista HOM05D000806 ORTHO05D002320 7.2e-19 97.8 53 86.8
SabraPtG0003400 Salix brachista HOM05D000806 ORTHO05D002324 7.2e-19 97.8 53 86.8
Solyc00g500019.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 7.2e-19 97.8 52 86.5
Ah.09g227360 Amaranthus hybridus HOM05D000806 ORTHO05D007429 1.2e-18 97.1 54 79.6
Ah.10g027510 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.2e-18 97.1 54 79.6
QL93p0311_0018 Quercus lobata HOM05D000806 ORTHO05D002320 1.2e-18 97.1 54 81.5
Ah.03g144240 Amaranthus hybridus HOM05D000806 ORTHO05D002324 1.6e-18 96.7 57 75.4
vmacro22411 Vaccinium macrocarpon HOM05D000806 ORTHO05D007429 2.1e-18 96.3 53 79.2
arahy.Tifrunner.gnm1.ann1.YJGE71 Arachis hypogaea HOM05D000806 ORTHO05D007429 3.6e-18 95.5 65 70.8
RhsimPtG0003100 Rhododendron simsii HOM05D000806 ORTHO05D002324 3.6e-18 95.5 52 80.8
ECA074G0009 Erigeron canadensis HOM05D000806 ORTHO05D002324 4.7e-18 95.1 116 48.3
ECA077G0001 Erigeron canadensis HOM05D000806 ORTHO05D002324 4.7e-18 95.1 116 48.3
Hund27898 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.4e-17 93.6 54 79.6
Hund29706 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.4e-17 93.6 54 79.6
Hund29710 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.4e-17 93.6 54 79.6
Hund29827 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.4e-17 93.6 54 79.6
Hund29835 Selenicereus undatus HOM05D000806 ORTHO05D002324 1.4e-17 93.6 54 79.6
EL10As1g23054 Beta vulgaris HOM05D000806 ORTHO05D002324 2.3e-17 92.8 54 77.8
Solyc04g039810.1 Solanum lycopersicum HOM05D000806 ORTHO05D007429 3.0e-17 92.4 72 66.7
Hund28893 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.2e-17 91.7 53 79.2
Hund29727 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.2e-17 91.7 53 79.2
Hund29858 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.2e-17 91.7 53 79.2
Hund29866 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.2e-17 91.7 53 79.2
Hund30695 Selenicereus undatus HOM05D000806 ORTHO05D002324 5.2e-17 91.7 53 79.2
Hund31091 Selenicereus undatus HOM05D000806 ORTHO05D007429 6.8e-17 91.3 141 39.0
CAN.G1478.9 Capsicum annuum HOM05D000806 ORTHO05D002320 1.2e-16 90.5 53 81.1
Lj2C1239T39 Lonicera japonica HOM05D000806 ORTHO05D002320 1.5e-16 90.1 119 48.7
Hund10571 Selenicereus undatus HOM05D000806 ORTHO05D007429 1.5e-16 90.1 78 57.7
Nn021s41539 Nelumbo nucifera HOM05D000806 ORTHO05D007429 2.0e-16 89.7 118 48.3
Nn1g07435 Nelumbo nucifera HOM05D000806 ORTHO05D007429 2.6e-16 89.4 75 60.0
HanXRQChr02g0038641 Helianthus annuus HOM05D000806 ORTHO05D007429 4.4e-16 88.6 76 61.8
Solyc10g045220.1 Solanum lycopersicum HOM05D000806 ORTHO05D002324 5.7e-16 88.2 76 61.8
HanXRQChr09g0267831 Helianthus annuus HOM05D000806 ORTHO05D007429 3.7e-15 85.5 60 68.3
HanXRQChr11g0337941 Helianthus annuus HOM05D000806 ORTHO05D007429 1.8e-14 83.2 57 64.9
Nitab4.5_0002181g0020 Nicotiana tabacum HOM05D006976 ORTHO05D008761 1.8e-14 83.2 142 40.1
Gorai.004G277000 Gossypium raimondii HOM05D000806 ORTHO05D007429 1.2e-13 80.5 43 88.4
Gohir.1Z050266 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.7e-12 76.6 42 83.3
Gohir.D04G129256 Gossypium hirsutum HOM05D000806 ORTHO05D002320 1.7e-12 76.6 48 75.0
BraA10t43926Z Brassica rapa HOM05D000806 ORTHO05D007429 2.9e-12 75.9 38 94.7
FAN12G3683 Fragaria x ananassa HOM05D000681 ORTHO05D035426 3.8e-12 75.5 42 83.3
Nitab4.5_0004697g0020 Nicotiana tabacum HOM05D000806 ORTHO05D007429 5.0e-12 75.1 77 53.2
Sed0010807 Sechium edule HOM05D000806 ORTHO05D002320 1.4e-09 67.0 36 88.9
Sed0026664 Sechium edule HOM05D000806 ORTHO05D002320 3.1e-09 65.9 33 93.9
ClCG04G004710 Citrullus lanatus HOM05D001966 ORTHO05D007429 1.2e-08 63.9 32 87.5


User provided reference genes

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