Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 2.5e-139 498.8 261 100.0
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 1.5e-131 473.0 255 98.0
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 5.1e-84 315.1 205 80.0
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 2.5e-83 312.8 206 82.5
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 3.3e-83 312.4 206 81.1
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 1.3e-82 310.5 206 78.6
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 2.8e-82 309.3 207 79.2
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 3.1e-81 305.8 212 75.9
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 5.3e-81 305.1 204 77.9
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 4.5e-80 302.0 206 77.2
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 5.9e-80 301.6 204 76.0
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 1.0e-79 300.8 206 75.7
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 1.3e-79 300.4 205 76.1
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 2.2e-79 299.7 206 75.2
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 1.4e-78 297.0 209 73.7
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 1.8e-76 290.0 206 71.8
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 5.3e-73 278.5 191 77.0
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 3.4e-72 275.8 191 76.4
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 1.3e-71 273.9 260 58.5
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 6.5e-71 271.6 203 69.5
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 8.5e-71 271.2 260 60.8
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 1.1e-70 270.8 209 65.6
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 1.4e-70 270.4 188 72.9
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 1.4e-70 270.4 188 72.3
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 7.2e-70 268.1 244 62.3
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 7.2e-70 268.1 259 57.1
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 9.4e-70 267.7 204 71.1
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 2.7e-69 266.2 244 58.2
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 2.7e-69 266.2 259 57.9
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 2.7e-69 266.2 210 65.7
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 3.6e-69 265.8 243 59.7
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 4.7e-69 265.4 200 66.5
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 4.7e-69 265.4 188 69.1
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 4.7e-69 265.4 254 58.3
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 6.1e-69 265.0 192 67.7
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 7.9e-69 264.6 200 66.0
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 1.0e-68 264.2 200 66.0
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 1.0e-68 264.2 185 75.7
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 2.3e-68 263.1 240 57.5
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 2.3e-68 263.1 240 58.8
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 2.3e-68 263.1 209 63.2
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 2.3e-68 263.1 205 63.4
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.3e-68 263.1 210 63.8
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 3.9e-68 262.3 210 64.3
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 5.1e-68 261.9 201 66.7
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 5.1e-68 261.9 194 66.5
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 8.8e-68 261.2 188 69.1
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 1.1e-67 260.8 194 66.5
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 3.3e-67 259.2 249 57.0
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 3.3e-67 259.2 203 65.5
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 4.4e-67 258.8 254 58.7
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 4.4e-67 258.8 207 63.8
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 5.7e-67 258.5 190 67.4
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 5.7e-67 258.5 193 66.3
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 7.4e-67 258.1 193 64.8
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 7.4e-67 258.1 188 70.7
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 7.4e-67 258.1 189 69.3
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.7e-66 256.9 189 67.7
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 2.2e-66 256.5 198 66.2
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 2.8e-66 256.1 214 66.4
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 2.8e-66 256.1 214 66.4
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 2.8e-66 256.1 192 66.7
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 3.7e-66 255.8 213 60.6
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 3.7e-66 255.8 193 66.3
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 4.8e-66 255.4 245 57.1
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 1.1e-65 254.2 191 66.5
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 1.1e-65 254.2 194 66.0
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 1.4e-65 253.8 193 64.2
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 1.4e-65 253.8 188 67.0
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 4.1e-65 252.3 204 64.7
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 4.1e-65 252.3 204 63.7
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 9.1e-65 251.1 238 58.4
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 9.1e-65 251.1 204 64.2
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.6e-64 250.4 193 64.8
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 2.0e-64 250.0 191 65.4
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 2.6e-64 249.6 203 63.5
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 3.5e-64 249.2 242 57.0
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 3.5e-64 249.2 210 60.0
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 4.5e-64 248.8 189 67.7
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 5.9e-64 248.4 213 61.0
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 7.7e-64 248.1 202 65.3
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 7.7e-64 248.1 199 63.8
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 1.0e-63 247.7 256 55.1
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 1.3e-63 247.3 213 60.1
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.3e-63 247.3 193 64.2
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 5.0e-63 245.4 193 65.3
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 6.5e-63 245.0 241 57.7
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 8.5e-63 244.6 204 62.3
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 1.5e-62 243.8 205 62.0
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 2.5e-62 243.0 206 61.2
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 7.2e-62 241.5 194 68.6
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 9.4e-62 241.1 208 58.7
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 1.2e-61 240.7 193 61.1
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 2.7e-61 239.6 191 69.1
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 6.1e-61 238.4 189 62.4
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 1.4e-60 237.3 186 63.4
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 1.8e-60 236.9 194 61.3
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 3.0e-60 236.1 188 61.7
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 5.2e-60 235.3 191 70.2
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 1.3e-58 230.7 201 65.7
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 1.8e-57 226.9 197 64.0
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 2.7e-56 223.0 203 57.6
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 1.1e-54 217.6 188 60.6
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 1.1e-54 217.6 189 60.8
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 2.1e-53 213.4 200 58.0
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 2.7e-53 213.0 176 62.5
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 1.3e-50 204.1 206 52.9
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 8.3e-50 201.4 241 46.5
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 2.4e-49 199.9 226 48.7
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 6.5e-47 191.8 153 64.1
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 3.6e-45 186.0 196 50.5
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 8.0e-45 184.9 185 50.3
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 5.2e-44 182.2 194 50.0
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.5e-43 180.6 181 53.6
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 2.6e-43 179.9 189 49.7
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 2.0e-40 170.2 139 62.6
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 3.5e-40 169.5 167 57.5
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 4.5e-40 169.1 151 60.3
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 7.7e-40 168.3 155 58.1
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 1.7e-39 167.2 180 46.7
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.4e-36 157.5 173 49.1
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 7.5e-35 151.8 140 62.9
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.6e-27 126.7 114 59.6
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 2.3e-23 113.6 180 40.6
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.5e-22 110.9 178 39.3
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 2.5e-22 110.2 56 92.9
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 3.3e-22 109.8 194 36.1
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 2.1e-16 90.5 52 76.9
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 1.9e-14 84.0 191 28.3
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 4.7e-13 79.3 44 84.1
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 4.7e-13 79.3 46 80.4
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.2e-11 74.7 80 47.5
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 5.4e-09 65.9 67 53.7
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 1.2e-08 64.7 67 55.2
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 3.9e-07 59.7 33 84.8
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 1.5e-06 57.8 65 50.8
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 3.3e-06 56.6 64 45.3
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 4.3e-06 56.2 60 53.3


User provided reference genes

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