Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BraA02t07971Z Brassica rapa HOM05D005873 ORTHO05D007582 0.0e+00 1403.3 698 100.0
A02p29440 Brassica napus HOM05D005873 ORTHO05D007582 0.0e+00 1396.3 698 99.4
C02p46710 Brassica napus HOM05D005873 ORTHO05D007582 0.0e+00 1367.1 696 97.6
BolC2t10723H Brassica oleracea HOM05D005873 ORTHO05D007582 0.0e+00 1347.8 689 97.5
BcaC03g16799 Brassica carinata HOM05D005873 ORTHO05D007582 0.0e+00 1330.5 689 97.0
Sp2g10820 Schrenkiella parvula HOM05D005873 ORTHO05D007582 0.0e+00 1309.3 700 93.3
Thhalv10000804m.g Eutrema salsugineum HOM05D005873 ORTHO05D007582 0.0e+00 1284.6 700 92.0
AL8G12650 Arabidopsis lyrata HOM05D005873 ORTHO05D007582 0.0e+00 1268.4 700 90.9
AT5G45900 Arabidopsis thaliana HOM05D005873 ORTHO05D007582 0.0e+00 1260.7 695 90.9
CARHR176060 Cardamine hirsuta HOM05D005873 ORTHO05D007582 0.0e+00 1256.5 703 89.9
Aa31LG9G7130 Aethionema arabicum HOM05D005873 ORTHO05D007582 0.0e+00 1186.8 709 84.2
THA.LOC104806153 Tarenaya hassleriana HOM05D005873 ORTHO05D007582 0.0e+00 1121.7 715 78.5
Carub.0008s0205 Capsella rubella HOM05D005873 ORTHO05D007582 0.0e+00 1110.9 667 83.8
GSVIVG01021202001 Vitis vinifera HOM05D005873 ORTHO05D007582 5.2e-301 1037.3 706 73.5
COL.COLO4_05490 Corchorus olitorius HOM05D005873 ORTHO05D007582 3.7e-299 1031.2 706 72.1
TWI63G0032 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 1.3e-296 1022.7 697 72.0
CSS0049485 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 3.9e-296 1021.1 701 72.0
Thecc.06G172000 Theobroma cacao HOM05D005873 ORTHO05D007582 6.6e-296 1020.4 706 71.1
CiPaw.10G058200 Carya illinoinensis HOM05D005873 ORTHO05D007582 8.6e-296 1020.0 705 71.6
Duzib192G0329 Durio zibethinus HOM05D005873 ORTHO05D007582 8.6e-296 1020.0 705 72.1
Gorai.009G163500 Gossypium raimondii HOM05D005873 ORTHO05D007582 8.6e-296 1020.0 706 71.5
Prupe.4G060100 Prunus persica HOM05D005873 ORTHO05D007582 1.1e-295 1019.6 707 72.4
TWI38G0673 Tripterygium wilfordii HOM05D005873 ORTHO05D007582 1.1e-295 1019.6 706 71.5
CSS0045323 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 4.3e-295 1017.7 698 72.2
Gohir.D05G158500 Gossypium hirsutum HOM05D005873 ORTHO05D007582 1.2e-294 1016.1 706 71.4
Gohir.A05G155800 Gossypium hirsutum HOM05D005873 ORTHO05D007582 3.6e-294 1014.6 706 71.4
TPR.G8345 Trifolium pratense HOM05D005873 ORTHO05D007582 3.6e-294 1014.6 698 71.6
MD10G1281000 Malus domestica HOM05D005873 ORTHO05D007582 1.8e-293 1012.3 708 72.0
RcHm_v2.0_Chr5g0010641 Rosa chinensis HOM05D005873 ORTHO05D007582 1.8e-293 1012.3 719 70.9
arahy.Tifrunner.gnm1.ann1.IZWY79 Arachis hypogaea HOM05D005873 ORTHO05D007582 6.8e-293 1010.4 693 72.0
Ciclev10014429m.g Citrus clementina HOM05D005873 ORTHO05D007582 6.8e-293 1010.4 718 70.6
CANSAT35G0525 Cannabis sativa HOM05D005873 ORTHO05D007582 8.9e-293 1010.0 708 71.2
MD05G1302300 Malus domestica HOM05D005873 ORTHO05D007582 1.2e-292 1009.6 708 71.6
TAR627G0247 Trochodendron aralioides HOM05D005873 ORTHO05D007582 1.2e-292 1009.6 698 71.5
Ca_21328_v3 Cicer arietinum L. HOM05D005873 ORTHO05D007582 2.6e-292 1008.4 700 70.9
FAN11G2228 Fragaria x ananassa HOM05D005873 ORTHO05D007582 5.8e-292 1007.3 716 71.4
Dinv04615 Davidia involucrata HOM05D005873 ORTHO05D007582 1.3e-291 1006.1 706 70.8
FvH4_3g07910 Fragaria vesca HOM05D005873 ORTHO05D007582 2.2e-291 1005.4 716 71.1
FAN21G0636 Fragaria x ananassa HOM05D005873 ORTHO05D007582 6.4e-291 1003.8 719 70.4
Sabra04G0036300 Salix brachista HOM05D005873 ORTHO05D007582 1.9e-290 1002.3 708 70.2
Nn1g04384 Nelumbo nucifera HOM05D005873 ORTHO05D007582 2.4e-290 1001.9 699 70.7
Glyma.12G010000 Glycine max HOM05D005873 ORTHO05D007582 4.2e-290 1001.1 684 71.5
Lalb_Chr03g0024111 Lupinus albus HOM05D005873 ORTHO05D007582 5.4e-290 1000.7 697 70.4
PGSC0003DMG400019634 Solanum tuberosum HOM05D005873 ORTHO05D007582 9.2e-290 1000.0 698 71.5
Eucgr.B01514 Eucalyptus grandis HOM05D005873 ORTHO05D007582 1.2e-289 999.6 713 69.3
Potri.004G055600 Populus trichocarpa HOM05D005873 ORTHO05D007582 1.2e-289 999.6 708 70.6
Aqoxy4G00415 Aquilegia oxysepala HOM05D005873 ORTHO05D007582 2.1e-289 998.8 704 70.2
VMungo1127G0781 Vigna mungo HOM05D005873 ORTHO05D007582 2.7e-289 998.4 699 70.8
Solyc11g068930.3 Solanum lycopersicum HOM05D005873 ORTHO05D007582 3.5e-289 998.0 697 71.2
FAN16G2124 Fragaria x ananassa HOM05D005873 ORTHO05D007582 4.6e-289 997.7 708 71.0
Peaxi162Scf00010g03612 Petunia axillaris HOM05D005873 ORTHO05D007582 7.8e-289 996.9 696 70.8
Phvul.011G010700 Phaseolus vulgaris HOM05D005873 ORTHO05D007582 1.7e-288 995.7 696 71.1
PGR004G0809 Punica granatum HOM05D005873 ORTHO05D007582 3.0e-288 995.0 697 70.7
Lj3g0011702 Lotus japonicus HOM05D005873 ORTHO05D007582 1.1e-287 993.0 704 69.7
Nn1g09089 Nelumbo nucifera HOM05D005873 ORTHO05D007582 4.3e-287 991.1 706 69.1
Cfa000601 Carpinus fangiana HOM05D005873 ORTHO05D007582 1.2e-286 989.6 698 69.8
arahy.Tifrunner.gnm1.ann1.6H0VZY Arachis hypogaea HOM05D005873 ORTHO05D007582 2.8e-286 988.4 690 70.9
Medtr0003s0540 Medicago truncatula HOM05D005873 ORTHO05D007582 3.6e-286 988.0 694 70.0
Sopen11g027640 Solanum pennellii HOM05D005873 ORTHO05D007582 4.7e-286 987.6 697 70.7
CAN.G689.28 Capsicum annuum HOM05D005873 ORTHO05D007582 1.8e-285 985.7 707 69.9
Oeu039925.1 Olea europaea HOM05D005873 ORTHO05D007582 2.0e-284 982.2 704 69.6
Sed0012124 Sechium edule HOM05D005873 ORTHO05D007582 2.6e-284 981.9 690 70.6
QL05p046535 Quercus lobata HOM05D005873 ORTHO05D007582 4.4e-284 981.1 778 64.3
Migut.M01045 Erythranthe guttata HOM05D005873 ORTHO05D007582 3.2e-282 974.9 707 70.2
PSO541G6035 Papaver somniferum HOM05D005873 ORTHO05D007582 3.2e-282 974.9 719 68.4
ClCG01G023710 Citrullus lanatus HOM05D005873 ORTHO05D007582 1.2e-281 973.0 701 69.6
DCAR_028009 Daucus carota HOM05D005873 ORTHO05D007582 1.6e-281 972.6 702 69.1
ECA236G1606 Erigeron canadensis HOM05D005873 ORTHO05D007582 3.9e-280 968.0 699 69.2
PSO675G7532 Papaver somniferum HOM05D005873 ORTHO05D007582 6.6e-280 967.2 719 67.7
SalBow8G4573 Salvia bowleyana HOM05D005873 ORTHO05D007582 4.3e-279 964.5 705 68.8
MSTRG.16147 Avicennia marina HOM05D005873 ORTHO05D007582 7.3e-279 963.8 711 67.7
Rhsim13G0191000 Rhododendron simsii HOM05D005873 ORTHO05D007582 1.1e-277 959.9 721 66.2
MELO3C007214.2 Cucumis melo HOM05D005873 ORTHO05D007582 1.8e-277 959.1 736 66.4
CsaV3_6G050860 Cucumis sativus L. HOM05D005873 ORTHO05D007582 5.8e-276 954.1 702 68.4
Lsat_1_v5_gn_7_23000 Lactuca sativa HOM05D005873 ORTHO05D007582 7.6e-276 953.7 708 67.9
Nitab4.5_0003937g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 8.4e-275 950.3 718 66.7
AUR62036593 Chenopodium quinoa HOM05D005873 ORTHO05D007582 5.4e-274 947.6 681 68.1
Lj1C1193T7 Lonicera japonica HOM05D005873 ORTHO05D007582 1.8e-272 942.6 703 67.4
Nitab4.5_0000158g0030 Nicotiana tabacum HOM05D005873 ORTHO05D007582 1.5e-271 939.5 659 70.6
FAN25G0256 Fragaria x ananassa HOM05D005873 ORTHO05D007582 2.1e-270 935.6 734 65.5
EL10Ac8g20512 Beta vulgaris HOM05D005873 ORTHO05D007582 2.9e-267 925.2 774 61.6
HanXRQChr05g0156521 Helianthus annuus HOM05D005873 ORTHO05D007582 4.9e-267 924.5 706 66.3
HanXRQChr13g0397371 Helianthus annuus HOM05D005873 ORTHO05D007582 6.4e-267 924.1 699 66.4
Hund21181 Selenicereus undatus HOM05D005873 ORTHO05D007582 1.2e-265 919.8 766 62.1
MBI06_g25992_MAGBIO Magnolia biondii HOM05D005873 ORTHO05D007582 2.7e-265 918.7 704 66.9
Ah.14g087180 Amaranthus hybridus HOM05D005873 ORTHO05D007582 1.5e-263 912.9 700 66.3
ATR0733G019 Amborella trichopoda HOM05D005873 ORTHO05D007582 3.4e-260 901.7 690 64.3
Psat7g197320 Pisum sativum HOM05D005873 ORTHO05D007582 1.6e-254 882.9 692 66.3
AUR62031177 Chenopodium quinoa HOM05D005873 ORTHO05D007582 1.3e-251 873.2 707 62.9
Cc11_g13830 Coffea canephora HOM05D005873 ORTHO05D007582 2.2e-251 872.5 703 62.0
Sc17g0005780 Simmondsia chinensis HOM05D005873 ORTHO05D007582 3.3e-247 858.6 591 71.7
Atru.chr10.1680 Acer truncatum HOM05D005873 ORTHO05D007582 1.1e-245 853.6 586 72.4
SEGI_08778 Sequoiadendron giganteum HOM05D005873 ORTHO05D007582 1.7e-243 846.3 719 59.9
SGA_v2.0_scaffold1G00037 Striga asiatica HOM05D005873 ORTHO05D007582 5.2e-232 808.1 700 61.0
Dinv40666 Davidia involucrata HOM05D005873 ORTHO05D007582 7.4e-231 804.3 553 71.1
vmacro01547 Vaccinium macrocarpon HOM05D005873 ORTHO05D007582 2.6e-228 795.8 713 58.9
Manes.17G054900 Manihot esculenta HOM05D005873 ORTHO05D007582 2.2e-219 766.1 549 68.7
Cpa.g.sc7.54 Carica papaya HOM05D005873 ORTHO05D007582 3.3e-210 735.7 518 70.7
AagrBONN_evm.TU.Sc2ySwM_117.2340 Anthoceros agrestis HOM05D005873 ORTHO05D007582 7.5e-207 724.5 686 53.5
Pp3c24_8100 Physcomitrium patens HOM05D005873 ORTHO05D007582 6.3e-206 721.5 685 54.3
SMO367G0884 Selaginella moellendorffii HOM05D005873 ORTHO05D007582 1.5e-194 683.7 688 52.0
CBR_g39927 Chara braunii HOM05D005873 ORTHO05D007582 6.4e-182 641.7 874 42.2
CSS0029481 Camellia sinensis var. sinensis HOM05D005873 ORTHO05D007582 8.3e-182 641.3 727 51.2
Eucgr.B01507 Eucalyptus grandis HOM05D005873 ORTHO05D007582 1.7e-171 607.1 441 68.3
CBR_g50802 Chara braunii HOM05D005873 ORTHO05D007582 1.1e-168 597.8 838 41.5
Os01g0614900 Oryza sativa ssp. japonica HOM05D005873 ORTHO05D007582 4.6e-164 582.4 683 48.9
Mapoly0015s0071 Marchantia polymorpha HOM05D005873 ORTHO05D007582 6.0e-156 555.4 495 57.2
Haze_06243 Corylus avellana HOM05D005873 ORTHO05D007582 1.6e-153 547.4 372 72.0
MCO13G516 Micromonas commoda HOM05D005873 ORTHO05D007582 1.3e-150 537.7 738 43.4
PRCOL_00005698 Prasinoderma coloniale HOM05D005873 ORTHO05D007582 2.3e-139 500.4 731 41.3
Cfa025052 Carpinus fangiana HOM05D005873 ORTHO05D007582 1.0e-131 474.9 740 40.0
Haze_26854 Corylus avellana HOM05D005873 ORTHO05D007582 1.1e-128 464.9 718 39.0
Cre03.g165215 Chlamydomonas reinhardtii HOM05D005873 ORTHO05D007582 7.2e-125 452.2 816 36.8
CDE08G0418 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.2e-106 391.7 305 66.6
Zm00001eb358160 Zea mays HOM05D005873 ORTHO05D007582 1.3e-105 388.3 355 55.8
Actinidia16800 Actinidia chinensis HOM05D005873 ORTHO05D007582 8.5e-102 375.6 334 60.2
CDE08G0836 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 2.0e-74 284.6 201 70.6
SHI28554 Sapria himalayana HOM05D005873 ORTHO05D007582 2.6e-74 284.3 313 51.1
unitig_0.g713 Utricularia gibba HOM05D005873 ORTHO05D007582 1.5e-61 241.9 185 67.6
CDE02G2814 Ceratophyllum demersum HOM05D005873 ORTHO05D007582 1.4e-59 235.3 168 69.6
TPR.G23454 Trifolium pratense HOM05D001972 ORTHO05D002555 2.0e-50 204.9 132 73.5
SHI28555 Sapria himalayana HOM05D005873 ORTHO05D007582 2.3e-38 164.9 102 78.4
Psat0s133g0080 Pisum sativum HOM05D005873 ORTHO05D007582 2.0e-34 151.8 196 46.9
Haze_06244 Corylus avellana HOM05D005873 ORTHO05D007582 1.1e-32 146.0 113 64.6
SHI28562 Sapria himalayana HOM05D005873 ORTHO05D007582 1.4e-32 145.6 120 59.2
SHI28558 Sapria himalayana HOM05D005873 ORTHO05D050808 1.1e-27 129.4 83 72.3
Potri.011G065402 Populus trichocarpa HOM05D005873 ORTHO05D007582 1.4e-24 119.0 99 66.7
Lsat_1_v5_gn_9_10320 Lactuca sativa HOM05D001670 ORTHO05D002980 4.8e-20 104.0 96 57.3
Lsat_1_v5_gn_1_96960 Lactuca sativa HOM05D001670 ORTHO05D002980 1.8e-19 102.1 81 64.2
Sabra11G0047200 Salix brachista HOM05D005873 ORTHO05D007582 1.5e-18 99.0 67 70.1
Lsat_1_v5_gn_4_5981 Lactuca sativa HOM05D005873 ORTHO05D002980 8.5e-17 93.2 57 78.9
A06p46270 Brassica napus HOM05D005873 ORTHO05D042378 2.5e-16 91.7 74 64.9
Oeu041773.1 Olea europaea HOM05D005873 ORTHO05D042378 1.5e-13 82.4 69 62.3
Cpa.g.c47463 Carica papaya HOM05D005873 ORTHO05D007582 1.7e-09 68.9 37 86.5


User provided reference genes

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