Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 0.0e+00 1155.2 610 100.0
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 3.0e-175 619.4 329 99.1
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 3.2e-153 546.2 368 77.7
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 4.2e-153 545.8 368 77.7
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 4.6e-152 542.3 368 77.4
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 4.6e-152 542.3 368 77.4
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 1.8e-151 540.4 368 77.4
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 1.8e-151 540.4 368 77.4
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 1.3e-149 534.3 368 76.4
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 1.3e-149 534.3 368 76.4
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 1.2e-147 527.7 368 75.0
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 1.4e-145 520.8 368 74.2
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 3.3e-142 509.6 368 73.4
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 1.3e-135 487.6 368 69.8
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 4.6e-128 462.6 375 64.8
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 1.1e-118 431.4 385 63.9
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 2.8e-109 400.2 221 97.3
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 3.6e-104 383.3 272 72.8
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 1.8e-100 370.9 366 54.4
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 9.1e-100 368.6 375 51.7
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 2.9e-98 363.6 374 51.1
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 6.5e-98 362.5 382 51.3
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 8.5e-98 362.1 382 51.8
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 8.5e-98 362.1 375 51.5
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 1.9e-97 360.9 373 51.2
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 1.9e-97 360.9 375 51.5
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 2.5e-97 360.5 382 51.8
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 2.5e-97 360.5 381 51.4
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 4.2e-97 359.8 375 50.9
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 3.6e-96 356.7 373 51.2
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 6.1e-96 355.9 375 49.6
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 1.0e-95 355.1 387 49.6
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 1.8e-95 354.4 375 49.9
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 2.3e-95 354.0 373 50.4
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 4.0e-95 353.2 375 50.7
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 5.2e-95 352.8 375 49.3
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 5.2e-95 352.8 375 49.9
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 2.0e-94 350.9 374 49.7
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 2.6e-94 350.5 374 49.7
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 5.7e-94 349.4 375 50.1
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 2.2e-93 347.4 374 49.2
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 2.2e-93 347.4 374 48.9
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 4.1e-92 343.2 375 49.3
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 2.0e-91 340.9 374 47.3
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 2.0e-91 340.9 375 48.5
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 5.9e-91 339.3 380 47.9
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 1.3e-90 338.2 377 48.5
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 1.3e-90 338.2 380 47.9
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 1.7e-90 337.8 380 48.2
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 2.3e-90 337.4 375 46.7
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 2.3e-90 337.4 375 47.5
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 8.6e-90 335.5 380 46.1
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 1.9e-89 334.3 381 47.5
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 3.3e-89 333.6 375 46.1
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 1.2e-88 331.6 380 48.2
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 1.6e-88 331.3 348 51.4
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 2.1e-88 330.9 375 48.3
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 2.1e-88 330.9 375 48.3
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 6.1e-88 329.3 380 47.4
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 6.1e-88 329.3 380 46.3
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 2.3e-87 327.4 375 47.5
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 2.3e-87 327.4 375 47.5
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 3.0e-87 327.0 374 47.6
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 3.0e-87 327.0 379 47.5
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 5.2e-87 326.2 374 48.1
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 6.8e-87 325.9 380 47.6
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 8.9e-87 325.5 370 47.3
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 2.0e-86 324.3 385 46.5
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 5.7e-86 322.8 375 45.9
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 9.8e-86 322.0 381 47.0
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 1.7e-85 321.2 374 48.7
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 1.7e-85 321.2 372 46.2
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 2.9e-85 320.5 375 45.1
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 2.9e-85 320.5 440 42.7
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 3.7e-85 320.1 370 45.9
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 6.4e-85 319.3 376 45.5
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 1.1e-84 318.5 381 46.5
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 1.4e-84 318.2 375 45.6
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 1.8e-84 317.8 374 45.2
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 2.4e-84 317.4 382 45.0
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 2.4e-84 317.4 375 44.5
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 3.2e-84 317.0 374 46.3
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 5.4e-84 316.2 374 46.5
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 7.0e-84 315.8 373 45.0
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 7.0e-84 315.8 375 44.0
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 9.2e-84 315.5 380 45.5
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 2.7e-83 313.9 377 45.1
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 4.6e-83 313.2 373 43.2
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 5.9e-83 312.8 382 44.0
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 5.9e-83 312.8 375 48.0
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 7.8e-83 312.4 375 44.8
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 1.0e-82 312.0 375 45.6
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 1.0e-82 312.0 375 43.2
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 3.3e-81 307.0 401 46.1
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 4.3e-81 306.6 376 44.4
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 7.3e-81 305.8 375 45.1
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 1.0e-79 302.0 375 43.5
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 1.8e-79 301.2 380 45.3
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 8.9e-79 298.9 380 42.6
C06p11850 Brassica napus HOM05D009238 ORTHO05D012489 3.4e-78 297.0 196 83.7
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 1.7e-77 294.7 381 42.3
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 1.0e-74 285.4 348 45.1
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 9.5e-73 278.9 374 42.5
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 1.5e-70 271.6 352 43.2
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 5.8e-70 269.6 358 43.9
BraA02t08674Z Brassica rapa HOM05D009238 ORTHO05D012489 8.3e-69 265.8 201 76.6
C02p30800 Brassica napus HOM05D009238 ORTHO05D012489 9.2e-68 262.3 218 67.0
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 3.3e-65 253.8 380 39.5
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 3.4e-62 243.8 275 46.5
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 4.4e-62 243.4 368 38.0
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 8.4e-61 239.2 341 39.6
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 7.1e-60 236.1 344 41.3
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 1.3e-58 231.9 381 35.7
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 8.6e-58 229.2 315 42.2
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 2.5e-57 227.6 116 95.7
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 2.5e-57 227.6 371 36.7
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 1.9e-52 211.5 384 33.6
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 5.3e-47 193.4 383 31.1
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 6.9e-47 193.0 182 56.6
A02p36830 Brassica napus HOM05D009238 ORTHO05D012489 2.0e-46 191.4 226 54.0
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 3.4e-46 190.7 377 30.8
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 7.1e-44 183.0 370 34.3
BcaC01g06924 Brassica carinata HOM05D000496 ORTHO05D000411 8.7e-42 176.0 223 52.0
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 5.5e-36 156.8 376 28.5
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 1.7e-29 135.2 300 32.7
BcaC09g49165 Brassica carinata HOM05D000032 ORTHO05D000925 7.9e-27 126.3 235 42.6
BraA04t16367Z Brassica rapa HOM05D009238 ORTHO05D012489 1.3e-26 125.6 234 42.7
BcaC07g39368 Brassica carinata HOM05D009238 ORTHO05D012489 5.1e-26 123.6 188 46.3
A04p06620 Brassica napus HOM05D009238 ORTHO05D012489 8.7e-26 122.9 228 42.5
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 2.5e-25 121.3 287 32.1
BolC2t07633H Brassica oleracea HOM05D009238 ORTHO05D019868 3.4e-22 110.9 203 41.4
BraA03t12194Z Brassica rapa HOM05D009238 ORTHO05D012489 7.6e-22 109.8 270 36.3
BcaB04g17452 Brassica carinata HOM05D009238 ORTHO05D019868 2.2e-21 108.2 239 33.9
BraA07t28639Z Brassica rapa HOM05D009238 ORTHO05D012489 1.9e-20 105.1 121 49.6
BraA03t13842Z Brassica rapa HOM05D009238 ORTHO05D020093 1.6e-19 102.1 196 43.4
BcaC08g47032 Brassica carinata HOM05D009238 ORTHO05D012489 1.3e-18 99.0 200 39.0
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 6.7e-18 96.7 82 57.3
BcaB05g23728 Brassica carinata HOM05D009238 ORTHO05D012489 4.3e-17 94.0 243 36.6
BcaB03g15929 Brassica carinata HOM05D000496 ORTHO05D000411 4.8e-16 90.5 121 44.6
BolC4t26060H Brassica oleracea HOM05D009238 ORTHO05D012489 1.1e-15 89.4 91 56.0
BcaC02g09623 Brassica carinata HOM05D002743 ORTHO05D002895 1.4e-15 89.0 76 59.2
C03p47070 Brassica napus HOM05D016815 ORTHO05D020093 6.9e-15 86.7 200 35.0
BcaC03g16856 Brassica carinata HOM05D009238 ORTHO05D019868 4.5e-14 84.0 181 38.1
BcaC01g01482 Brassica carinata HOM05D009238 ORTHO05D021611 2.2e-13 81.6 84 52.4
BolC6t38778H Brassica oleracea HOM05D009238 ORTHO05D012489 3.2e-12 77.8 193 32.1
BolC2t08494H Brassica oleracea HOM05D009238 ORTHO05D012489 1.0e-10 72.8 114 39.5
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 3.9e-10 70.9 70 50.0
C05p15940 Brassica napus HOM05D009238 ORTHO05D021611 5.1e-10 70.5 131 36.6
C03p31480 Brassica napus HOM05D009238 ORTHO05D021611 6.7e-10 70.1 101 42.6
BraA10t43824Z Brassica rapa HOM05D001239 ORTHO05D000925 1.5e-09 68.9 190 32.1
BcaC01g00485 Brassica carinata HOM05D000496 ORTHO05D000411 9.7e-09 66.2 66 51.5
BcaC06g33741 Brassica carinata HOM05D000496 ORTHO05D000411 9.7e-09 66.2 52 59.6
C02p47500 Brassica napus HOM05D009238 ORTHO05D019868 9.7e-09 66.2 135 40.7
C05p23240 Brassica napus HOM05D009238 ORTHO05D021611 9.7e-09 66.2 200 32.0
BcaC07g36896 Brassica carinata HOM05D004566 ORTHO05D000925 1.3e-08 65.9 247 27.5
BcaB06g28487 Brassica carinata HOM05D011670 ORTHO05D027357 2.2e-08 65.1 64 50.0
BcaC05g26464 Brassica carinata HOM05D009238 ORTHO05D024301 2.2e-08 65.1 145 35.9
C04p60320 Brassica napus HOM05D011670 ORTHO05D027357 2.2e-08 65.1 64 50.0
BcaB06g28484 Brassica carinata HOM05D011670 ORTHO05D027357 2.8e-08 64.7 75 45.3
BcaC02g09195 Brassica carinata HOM05D001239 ORTHO05D031919 3.7e-08 64.3 45 62.2
C05p09640 Brassica napus HOM05D011670 ORTHO05D027357 3.7e-08 64.3 56 58.9
BcaC03g18002 Brassica carinata HOM05D016815 ORTHO05D020093 6.3e-08 63.5 64 53.1
C02p60610 Brassica napus HOM05D016815 ORTHO05D020093 6.3e-08 63.5 64 53.1
BraA01t02545Z Brassica rapa HOM05D009238 ORTHO05D021611 1.1e-07 62.8 46 67.4
BcaC01g03871 Brassica carinata HOM05D001239 ORTHO05D011709 2.4e-07 61.6 47 57.4
BcaB06g28485 Brassica carinata HOM05D011670 ORTHO05D001112 3.1e-07 61.2 72 43.1
BcaC06g36045 Brassica carinata HOM05D000496 ORTHO05D000411 3.1e-07 61.2 104 35.6
BolC1t02956H Brassica oleracea HOM05D001239 ORTHO05D023908 3.1e-07 61.2 49 55.1
BcaB06g25898 Brassica carinata HOM05D011670 ORTHO05D012489 6.9e-07 60.1 199 29.6
A01p18960 Brassica napus HOM05D014076 ORTHO05D021903 6.9e-07 60.1 94 38.3
C01p30110 Brassica napus HOM05D001239 ORTHO05D023908 6.9e-07 60.1 132 33.3
BraA01t01837Z Brassica rapa HOM05D014076 ORTHO05D021903 6.9e-07 60.1 94 38.3
BolC2t10713H Brassica oleracea HOM05D001239 ORTHO05D011709 9.1e-07 59.7 188 28.7
BraA04t17766Z Brassica rapa HOM05D001239 ORTHO05D024427 9.1e-07 59.7 51 51.0
A10p16820 Brassica napus HOM05D016815 ORTHO05D012489 1.5e-06 58.9 47 59.6
BcaC02g08196 Brassica carinata HOM05D009238 ORTHO05D011709 2.0e-06 58.5 72 47.2
BcaC04g21866 Brassica carinata HOM05D011670 ORTHO05D012489 2.0e-06 58.5 133 34.6
BcaC05g25304 Brassica carinata HOM05D000508 ORTHO05D000371 3.4e-06 57.8 109 34.9
C05p11830 Brassica napus HOM05D001239 ORTHO05D033080 3.4e-06 57.8 109 34.9
BolC9t59809H Brassica oleracea HOM05D016815 ORTHO05D012489 5.9e-06 57.0 39 69.2
C03p49130 Brassica napus HOM05D014076 ORTHO05D024532 7.7e-06 56.6 49 51.0
C08p14340 Brassica napus HOM05D001239 ORTHO05D024532 7.7e-06 56.6 48 54.2


User provided reference genes

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