Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g44311 Brassica carinata HOM05D013429 ORTHO05D003021 1.0e-99 366.7 184 100.0
C06p17340 Brassica napus HOM05D013429 ORTHO05D003021 1.0e-99 366.7 184 100.0
BolC6t36930H Brassica oleracea HOM05D013429 ORTHO05D003021 1.0e-99 366.7 184 100.0
A05p16510 Brassica napus HOM05D013429 ORTHO05D003021 3.2e-80 302.0 166 92.2
BraA05t20556Z Brassica rapa HOM05D013429 ORTHO05D003021 2.1e-79 299.3 166 91.6
BcaB03g12984 Brassica carinata HOM05D013429 ORTHO05D003021 1.4e-72 276.6 185 79.5
Thhalv10026311m.g Eutrema salsugineum HOM05D013429 ORTHO05D003021 1.1e-69 266.9 187 74.3
Sp7g10760 Schrenkiella parvula HOM05D013429 ORTHO05D003021 3.3e-61 238.8 192 68.8
AL9U10630 Arabidopsis lyrata HOM05D013429 ORTHO05D003021 1.3e-57 226.9 190 65.8
AT3G24535 Arabidopsis thaliana HOM05D013429 ORTHO05D003021 1.9e-56 223.0 191 64.9
CARHR218750 Cardamine hirsuta HOM05D013429 ORTHO05D003021 1.4e-48 196.8 186 60.8
Carub.0007s2939 Capsella rubella HOM05D013429 ORTHO05D003021 3.5e-47 192.2 188 60.1
THA.LOC104804590 Tarenaya hassleriana HOM05D002997 ORTHO05D003021 6.7e-30 134.8 183 47.5
EL10Ac8g18495 Beta vulgaris HOM05D002997 ORTHO05D003021 6.5e-17 91.7 212 33.0
TPR.G13701 Trifolium pratense HOM05D002997 ORTHO05D003021 6.5e-17 91.7 175 39.4
Duzib187G1185 Durio zibethinus HOM05D002997 ORTHO05D003021 8.5e-17 91.3 203 36.9
RcHm_v2.0_Chr2g0090421 Rosa chinensis HOM05D002997 ORTHO05D003021 1.2e-15 87.4 205 35.6
CSS0043954 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 3.6e-15 85.9 217 34.1
Prupe.7G231300 Prunus persica HOM05D002997 ORTHO05D003021 3.6e-15 85.9 238 32.4
THA.LOC109116490 Tarenaya hassleriana HOM05D002997 ORTHO05D003021 3.6e-15 85.9 172 37.8
Ah.14g082050 Amaranthus hybridus HOM05D002997 ORTHO05D003021 6.1e-15 85.1 217 30.4
TPR.G21686 Trifolium pratense HOM05D002997 ORTHO05D003021 1.4e-14 84.0 197 33.0
CSS0030169 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 1.8e-14 83.6 217 33.2
Medtr6g086915 Medicago truncatula HOM05D002997 ORTHO05D003021 5.1e-14 82.0 171 37.4
Gohir.A06G062800 Gossypium hirsutum HOM05D002997 ORTHO05D003021 6.7e-14 81.6 191 35.6
Sed0005249 Sechium edule HOM05D002997 ORTHO05D003021 6.7e-14 81.6 198 31.3
CiPaw.03G231900 Carya illinoinensis HOM05D002997 ORTHO05D003021 8.8e-14 81.3 241 32.0
AUR62010993 Chenopodium quinoa HOM05D002997 ORTHO05D003021 8.8e-14 81.3 254 32.3
Ciclev10009432m.g Citrus clementina HOM05D002997 ORTHO05D003021 8.8e-14 81.3 203 32.0
Ca_17338_v3 Cicer arietinum L. HOM05D002997 ORTHO05D003021 1.1e-13 80.9 196 33.7
MD02G1046500 Malus domestica HOM05D002997 ORTHO05D003021 1.5e-13 80.5 210 35.2
Haze_25717 Corylus avellana HOM05D002997 ORTHO05D003021 2.6e-13 79.7 164 37.8
MD15G1184700 Malus domestica HOM05D002997 ORTHO05D003021 4.4e-13 79.0 214 32.7
QL02p085284 Quercus lobata HOM05D002997 ORTHO05D003021 4.4e-13 79.0 219 29.7
FAN26G0466 Fragaria x ananassa HOM05D002997 ORTHO05D003021 7.4e-13 78.2 206 33.0
Gohir.D07G005700 Gossypium hirsutum HOM05D002997 ORTHO05D003021 7.4e-13 78.2 172 33.1
Gorai.001G005300 Gossypium raimondii HOM05D002997 ORTHO05D003021 7.4e-13 78.2 172 33.1
FAN28G0775 Fragaria x ananassa HOM05D002997 ORTHO05D003021 2.8e-12 76.3 206 32.5
TWI32G0809 Tripterygium wilfordii HOM05D002997 ORTHO05D003021 2.8e-12 76.3 177 33.9
FvH4_1g04790 Fragaria vesca HOM05D002997 ORTHO05D003021 3.7e-12 75.9 202 32.2
FAN19G1659 Fragaria x ananassa HOM05D002997 ORTHO05D003021 3.7e-12 75.9 202 32.2
Manes.16G115900 Manihot esculenta HOM05D002997 ORTHO05D003021 3.7e-12 75.9 220 30.5
Dinv41605 Davidia involucrata HOM05D002997 ORTHO05D003021 4.8e-12 75.5 214 32.7
Gohir.A07G006300 Gossypium hirsutum HOM05D002997 ORTHO05D003021 4.8e-12 75.5 174 36.2
Lalb_Chr22g0352801 Lupinus albus HOM05D002997 ORTHO05D003021 4.8e-12 75.5 200 34.5
TAR636G2256 Trochodendron aralioides HOM05D002997 ORTHO05D003021 6.3e-12 75.1 206 32.0
Eucgr.C01041 Eucalyptus grandis HOM05D002997 ORTHO05D003021 8.2e-12 74.7 219 27.9
Oeu028166.1 Olea europaea HOM05D002997 ORTHO05D003021 1.4e-11 73.9 190 34.2
Psat1g042720 Pisum sativum HOM05D002997 ORTHO05D003021 1.4e-11 73.9 171 35.7
Lj2g0000274 Lotus japonicus HOM05D002997 ORTHO05D003021 1.8e-11 73.6 220 28.6
MELO3C025342.2 Cucumis melo HOM05D002997 ORTHO05D003021 3.1e-11 72.8 193 30.6
Sc18g0001230 Simmondsia chinensis HOM05D002997 ORTHO05D003021 3.1e-11 72.8 234 27.8
Medtr8g103530 Medicago truncatula HOM05D002997 ORTHO05D003021 5.3e-11 72.0 198 29.3
Glyma.09G190800 Glycine max HOM05D002997 ORTHO05D003021 7.0e-11 71.6 239 30.1
TAR624G0694 Trochodendron aralioides HOM05D002997 ORTHO05D003021 7.0e-11 71.6 194 33.5
Glyma.05G231000 Glycine max HOM05D002997 ORTHO05D003021 9.1e-11 71.2 224 33.5
Cfa003255 Carpinus fangiana HOM05D002997 ORTHO05D003021 1.2e-10 70.9 175 32.0
AUR62021504 Chenopodium quinoa HOM05D002997 ORTHO05D003021 1.2e-10 70.9 236 31.8
Lj4g0026369 Lotus japonicus HOM05D002997 ORTHO05D003021 1.2e-10 70.9 227 30.4
Rhsim01G0094800 Rhododendron simsii HOM05D002997 ORTHO05D003021 1.2e-10 70.9 192 34.9
Thecc.09G110100 Theobroma cacao HOM05D002997 ORTHO05D003021 1.2e-10 70.9 217 32.3
Cpa.g.sc23.107 Carica papaya HOM05D002997 ORTHO05D003021 2.0e-10 70.1 181 33.7
CSS0015499 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 3.5e-10 69.3 179 30.7
Potri.018G080001 Populus trichocarpa HOM05D002997 ORTHO05D003021 4.5e-10 68.9 228 30.7
TWI63G1630 Tripterygium wilfordii HOM05D002997 ORTHO05D003021 4.5e-10 68.9 171 30.4
MSTRG.22676 Avicennia marina HOM05D002997 ORTHO05D003021 5.9e-10 68.6 190 33.7
CSS0016234 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 7.7e-10 68.2 179 30.2
Eucgr.J02977 Eucalyptus grandis HOM05D002997 ORTHO05D003021 7.7e-10 68.2 224 30.8
Phvul.004G163500 Phaseolus vulgaris HOM05D002997 ORTHO05D003021 1.0e-09 67.8 219 30.6
HanXRQChr10g0318581 Helianthus annuus HOM05D002997 ORTHO05D003021 1.3e-09 67.4 185 29.7
Lalb_Chr14g0371511 Lupinus albus HOM05D002997 ORTHO05D003021 1.3e-09 67.4 201 30.8
Rhsim12G0199200 Rhododendron simsii HOM05D002997 ORTHO05D003021 1.3e-09 67.4 191 31.9
CiPaw.02G150100 Carya illinoinensis HOM05D002997 ORTHO05D003021 1.7e-09 67.0 212 30.2
Lj3g0027232 Lotus japonicus HOM05D002997 ORTHO05D003021 1.7e-09 67.0 187 33.2
Sed0009770 Sechium edule HOM05D002997 ORTHO05D003021 1.7e-09 67.0 167 32.3
COL.COLO4_34929 Corchorus olitorius HOM05D002997 ORTHO05D003021 2.2e-09 66.6 74 47.3
VMungo0464G1542 Vigna mungo HOM05D002997 ORTHO05D003021 2.9e-09 66.2 223 30.5
Psat7g250680 Pisum sativum HOM05D002997 ORTHO05D003021 3.8e-09 65.9 197 28.9
Glyma.07G086100 Glycine max HOM05D002997 ORTHO05D003021 5.0e-09 65.5 239 28.9
Medtr0147s0050 Medicago truncatula HOM05D002997 ORTHO05D003021 5.0e-09 65.5 189 29.6
Prupe.3G069200 Prunus persica HOM05D002997 ORTHO05D003021 5.0e-09 65.5 194 31.4
CSS0013816 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 6.5e-09 65.1 197 29.4
Lj5C59T17 Lonicera japonica HOM05D002997 ORTHO05D003021 6.5e-09 65.1 58 48.3
Lj9P508T53 Lonicera japonica HOM05D002997 ORTHO05D003021 6.5e-09 65.1 57 50.9
Nn2g11740 Nelumbo nucifera HOM05D002997 ORTHO05D003021 6.5e-09 65.1 213 28.6
Aqoxy7G01663 Aquilegia oxysepala HOM05D002997 ORTHO05D003021 8.5e-09 64.7 200 32.5
CSS0045808 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 1.1e-08 64.3 161 33.5
Lsat_1_v5_gn_4_102060 Lactuca sativa HOM05D002997 ORTHO05D003021 1.1e-08 64.3 184 29.9
Nn8g39177 Nelumbo nucifera HOM05D002997 ORTHO05D003021 1.1e-08 64.3 215 28.8
Nitab4.5_0001948g0040 Nicotiana tabacum HOM05D002997 ORTHO05D003021 1.1e-08 64.3 226 28.3
Sabra18G0067900 Salix brachista HOM05D002997 ORTHO05D003021 1.1e-08 64.3 224 28.6
Sopen07g012440 Solanum pennellii HOM05D002997 ORTHO05D003021 1.1e-08 64.3 163 32.5
VMungo0251G2794 Vigna mungo HOM05D002997 ORTHO05D003021 1.1e-08 64.3 192 31.2
Glyma.08G038500 Glycine max HOM05D002997 ORTHO05D003021 1.5e-08 63.9 230 30.9
AUR62016460 Chenopodium quinoa HOM05D002997 ORTHO05D003021 1.9e-08 63.5 59 52.5
Cc06_g09680 Coffea canephora HOM05D002997 ORTHO05D003021 1.9e-08 63.5 242 28.1
DCAR_028709 Daucus carota HOM05D002997 ORTHO05D003021 1.9e-08 63.5 167 31.1
Lsat_1_v5_gn_7_40840 Lactuca sativa HOM05D002997 ORTHO05D003021 1.9e-08 63.5 165 29.7
Oeu033502.1 Olea europaea HOM05D002997 ORTHO05D003021 3.2e-08 62.8 191 29.3
Lalb_Chr25g0279881 Lupinus albus HOM05D002997 ORTHO05D003021 4.2e-08 62.4 208 30.8
Nitab4.5_0000351g0070 Nicotiana tabacum HOM05D001537 ORTHO05D008612 4.2e-08 62.4 186 29.6
CSS0002685 Camellia sinensis var. sinensis HOM05D002997 ORTHO05D003021 5.5e-08 62.0 170 30.0
HanXRQChr09g0275181 Helianthus annuus HOM05D002997 ORTHO05D003021 5.5e-08 62.0 184 33.2
Phvul.002G313100 Phaseolus vulgaris HOM05D002997 ORTHO05D003021 7.2e-08 61.6 199 29.1
MSTRG.9461 Avicennia marina HOM05D002997 ORTHO05D003021 1.2e-07 60.8 76 43.4
MD09G1210900 Malus domestica HOM05D002997 ORTHO05D003021 1.2e-07 60.8 192 30.2
PGR142G3077 Punica granatum HOM05D002997 ORTHO05D003021 1.2e-07 60.8 213 30.0
TPR.G17668 Trifolium pratense HOM05D002997 ORTHO05D003021 1.2e-07 60.8 201 28.9
Gohir.A10G080600 Gossypium hirsutum HOM05D002997 ORTHO05D003021 1.6e-07 60.5 103 35.9
PGSC0003DMG400039158 Solanum tuberosum HOM05D002997 ORTHO05D003021 1.6e-07 60.5 207 28.0
PGSC0003DMG402002540 Solanum tuberosum HOM05D002997 ORTHO05D003021 1.6e-07 60.5 207 28.0
TWI12G0343 Tripterygium wilfordii HOM05D002997 ORTHO05D003021 1.6e-07 60.5 198 29.8
Atru.chr7.1352 Acer truncatum HOM05D002997 ORTHO05D003021 2.1e-07 60.1 202 28.2
Cpa.g.sc98.24 Carica papaya HOM05D002997 ORTHO05D003021 2.1e-07 60.1 194 29.9
Gorai.011G075100 Gossypium raimondii HOM05D002997 ORTHO05D003021 2.1e-07 60.1 103 35.0
HanXRQChr12g0355621 Helianthus annuus HOM05D002997 ORTHO05D003021 2.1e-07 60.1 170 34.1
FAN23G1833 Fragaria x ananassa HOM05D002997 ORTHO05D003021 2.7e-07 59.7 193 31.6
MD17G1193700 Malus domestica HOM05D002997 ORTHO05D003021 2.7e-07 59.7 189 29.1
SGA_v2.0_scaffold37G14833 Striga asiatica HOM05D002997 ORTHO05D003021 2.7e-07 59.7 193 28.0
EL10Ac9g22016 Beta vulgaris HOM05D001537 ORTHO05D008612 3.6e-07 59.3 58 51.7
Thecc.06G090500 Theobroma cacao HOM05D002997 ORTHO05D003021 3.6e-07 59.3 203 27.6
DCAR_002646 Daucus carota HOM05D002997 ORTHO05D003021 4.7e-07 58.9 185 25.4
Migut.I00887 Erythranthe guttata HOM05D002997 ORTHO05D003021 4.7e-07 58.9 184 28.3
Sabra03G0029800 Salix brachista HOM05D002997 ORTHO05D003021 4.7e-07 58.9 197 31.0
Gohir.A05G131000 Gossypium hirsutum HOM05D002997 ORTHO05D003021 6.1e-07 58.5 55 52.7
Gohir.D05G130300 Gossypium hirsutum HOM05D002997 ORTHO05D003021 6.1e-07 58.5 55 52.7
Gohir.D10G070750 Gossypium hirsutum HOM05D002997 ORTHO05D003021 6.1e-07 58.5 99 34.3
Gorai.009G134100 Gossypium raimondii HOM05D002997 ORTHO05D003021 6.1e-07 58.5 55 52.7
Solyc03g120790.1 Solanum lycopersicum HOM05D002997 ORTHO05D003021 6.1e-07 58.5 207 28.0
Sopen03g039610 Solanum pennellii HOM05D002997 ORTHO05D003021 6.1e-07 58.5 207 27.5
MBI01_g06513_MAGBIO Magnolia biondii HOM05D002997 ORTHO05D003021 8.0e-07 58.2 205 28.3
Atru.chr1.3308 Acer truncatum HOM05D002997 ORTHO05D003021 1.0e-06 57.8 56 50.0
Manes.03G020800 Manihot esculenta HOM05D002997 ORTHO05D003021 1.0e-06 57.8 54 48.1
THA.LOC109116676 Tarenaya hassleriana HOM05D002997 ORTHO05D003021 1.0e-06 57.8 54 44.4
CiPaw.01G237700 Carya illinoinensis HOM05D002997 ORTHO05D003021 1.4e-06 57.4 196 30.1
Ca_20381_v3 Cicer arietinum L. HOM05D002997 ORTHO05D003021 1.4e-06 57.4 56 50.0
Manes.11G044600 Manihot esculenta HOM05D002997 ORTHO05D003021 1.4e-06 57.4 193 29.5
ECA232G1479 Erigeron canadensis HOM05D002997 ORTHO05D003021 1.8e-06 57.0 179 30.2
CAN.G395.10 Capsicum annuum HOM05D002997 ORTHO05D003021 2.3e-06 56.6 183 27.3
Cfa002082 Carpinus fangiana HOM05D002997 ORTHO05D003021 2.3e-06 56.6 61 49.2
Potri.003G053600 Populus trichocarpa HOM05D002997 ORTHO05D003021 2.3e-06 56.6 201 29.4
Lj3g0023992 Lotus japonicus HOM05D002997 ORTHO05D003021 3.0e-06 56.2 204 28.9
Lalb_Chr14g0373331 Lupinus albus HOM05D002997 ORTHO05D003021 3.0e-06 56.2 210 28.1
FAN02G2191 Fragaria x ananassa HOM05D002997 ORTHO05D003021 4.0e-06 55.8 202 28.2
Glyma.07G005100 Glycine max HOM05D002997 ORTHO05D003021 4.0e-06 55.8 203 29.6
Medtr0147s0020 Medicago truncatula HOM05D002997 ORTHO05D003021 4.0e-06 55.8 56 50.0
Actinidia08985 Actinidia chinensis HOM05D002997 ORTHO05D003021 5.2e-06 55.5 56 48.2
Glyma.15G015400 Glycine max HOM05D002997 ORTHO05D003021 5.2e-06 55.5 199 27.6
Ah.01g005480 Amaranthus hybridus HOM05D002997 ORTHO05D003021 6.7e-06 55.1 151 31.1
CAN.G438.12 Capsicum annuum HOM05D002997 ORTHO05D003021 6.7e-06 55.1 62 43.5
COL.COLO4_30400 Corchorus olitorius HOM05D001537 ORTHO05D008612 6.7e-06 55.1 55 49.1
Potri.001G182500 Populus trichocarpa HOM05D002997 ORTHO05D003021 6.7e-06 55.1 198 28.8
SalBow2G2319 Salvia bowleyana HOM05D002997 ORTHO05D003021 6.7e-06 55.1 52 50.0
THA.LOC104810523 Tarenaya hassleriana HOM05D002997 ORTHO05D003021 6.7e-06 55.1 156 32.1
unitig_21.g20353 Utricularia gibba HOM05D002997 ORTHO05D003021 6.7e-06 55.1 161 28.0
ClCG09G002040 Citrullus lanatus HOM05D001537 ORTHO05D008612 8.8e-06 54.7 211 26.5
Ciclev10026471m.g Citrus clementina HOM05D002997 ORTHO05D003021 8.8e-06 54.7 202 27.2
Thhalv10008881m.g Eutrema salsugineum HOM05D002997 ORTHO05D003021 8.8e-06 54.7 174 28.2
FAN09G1570 Fragaria x ananassa HOM05D002997 ORTHO05D003021 8.8e-06 54.7 203 27.6


User provided reference genes

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