Gene: COL.COLO4_30400
General Information
Structural Information
- Species Corchorus olitorius
- Gene Identifier COL.COLO4_30400
- Transcript Identifier COL.rna29116
- Gene Type Coding gene
- Location AWUE01020726.1 : 51303-58076 : negative
Gene Family Information
- ID HOM05D001537
- #Genes/#Species 414/100
- Phylogenetic origin
- ID ORTHO05D008612
- #Genes/#Species 117/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid rna29116
- GenBank OMO66742.1
- id gene30372
- gene_name COLO4_30400
- uniprot A0A1R3H8R8
Descriptions
- Description Helicase-like, DEXD box c2 type
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006139 | IEA | GOA Database | nucleobase-containing compound metabolic process | |
| GO:0006139 | IEA | InterPro | nucleobase-containing compound metabolic process | |
| GO:0016070 | ISO | PLAZA Integrative Orthology | RNA metabolic process | Solyc06g066670.4 |
| GO:0032508 | IEA | GOA Database | DNA duplex unwinding |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003724 | ISO | PLAZA Integrative Orthology | RNA helicase activity | Solyc06g066670.4 |
| GO:0016818 | IEA | GOA Database | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | |
| GO:0016818 | IEA | InterPro | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | |
| GO:0004386 | IEA | GOA Database | helicase activity | |
| GO:0004386 | IEA | InterPro | helicase activity | |
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005524 | IEA | GOA Database | ATP binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003678 | IEA | GOA Database | DNA helicase activity | |
| GO:0003678 | IEA | InterPro | DNA helicase activity | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0000166 | IEA | GOA Database | nucleotide binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR010614 | DEAD2 |
| IPR006555 | ATP-dependent helicase, C-terminal |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR028331 | ATP-dependent RNA helicase CHL1/DDX11 |
| IPR006554 | Helicase-like, DEXD box c2 type |
| IPR045028 | Helicase superfamily 1/2, DinG/Rad3-like |
| IPR013020 | ATP-dependent helicase Rad3/Chl1-like |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |