Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t36697H Brassica oleracea HOM05D004494 ORTHO05D005493 2.1e-24 114.8 53 100.0
A05p17960 Brassica napus HOM05D004494 ORTHO05D005493 1.6e-21 105.1 51 94.1
BraA05t20689Z Brassica rapa HOM05D004494 ORTHO05D005493 1.6e-21 105.1 51 94.1
C03p91710 Brassica napus HOM05D004494 ORTHO05D005493 4.8e-21 103.6 51 92.2
C06p15220 Brassica napus HOM05D004494 ORTHO05D005493 2.0e-19 98.2 48 93.8
A08p01450 Brassica napus HOM05D004494 ORTHO05D005493 4.5e-19 97.1 47 93.6
BcaB04g17064 Brassica carinata HOM05D004494 ORTHO05D005493 3.2e-17 90.9 48 87.5
BcaB07g33308 Brassica carinata HOM05D004494 ORTHO05D005493 3.2e-17 90.9 48 87.5
BcaC01g01406 Brassica carinata HOM05D004494 ORTHO05D005493 3.2e-17 90.9 48 87.5
BcaC08g43550 Brassica carinata HOM05D004494 ORTHO05D005493 3.2e-17 90.9 48 87.5
A06p00840 Brassica napus HOM05D004494 ORTHO05D005493 3.2e-17 90.9 48 87.5
C06p09480 Brassica napus HOM05D004494 ORTHO05D005493 3.2e-17 90.9 48 87.5
BraA08t32198Z Brassica rapa HOM05D004494 ORTHO05D005493 3.2e-17 90.9 48 87.5
BraSC277t45950Z Brassica rapa HOM05D004494 ORTHO05D005493 3.2e-17 90.9 48 87.5
Sp1g40220 Schrenkiella parvula HOM05D004494 ORTHO05D005493 3.2e-17 90.9 48 87.5
Sp7g00900 Schrenkiella parvula HOM05D004494 ORTHO05D005493 3.2e-17 90.9 48 87.5
BolC3t21490H Brassica oleracea HOM05D004494 ORTHO05D005493 5.4e-17 90.1 44 93.2
BcaC05g27278 Brassica carinata HOM05D004494 ORTHO05D005493 9.3e-17 89.4 44 90.9
Thhalv10011934m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 1.6e-16 88.6 48 85.4
Haze_25494 Corylus avellana HOM05D004494 ORTHO05D005493 4.6e-16 87.0 44 90.9
Oeu012705.2 Olea europaea HOM05D004494 ORTHO05D005493 6.0e-16 86.7 51 78.4
AT5G41010 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 7.9e-16 86.3 48 83.3
THA.LOC104822608 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 7.9e-16 86.3 44 86.4
BolC8t52568H Brassica oleracea HOM05D004494 ORTHO05D005493 1.0e-15 85.9 42 92.9
Thhalv10028022m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 1.0e-15 85.9 48 83.3
arahy.Tifrunner.gnm1.ann1.IHMM71 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.3e-15 85.5 49 77.6
arahy.Tifrunner.gnm1.ann1.QX7YV8 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.3e-15 85.5 49 77.6
COL.COLO4_31155 Corchorus olitorius HOM05D004494 ORTHO05D005493 1.3e-15 85.5 44 86.4
Duzib192G0124 Durio zibethinus HOM05D004494 ORTHO05D005493 1.3e-15 85.5 44 86.4
Duzib235G0349 Durio zibethinus HOM05D004494 ORTHO05D005493 1.3e-15 85.5 44 86.4
Gohir.A06G195100 Gossypium hirsutum HOM05D004494 ORTHO05D005493 1.3e-15 85.5 44 86.4
Gohir.D06G202700 Gossypium hirsutum HOM05D004494 ORTHO05D005493 1.3e-15 85.5 44 86.4
Gohir.D11G001400 Gossypium hirsutum HOM05D004494 ORTHO05D005493 1.3e-15 85.5 44 86.4
Gorai.007G002300 Gossypium raimondii HOM05D004494 ORTHO05D005493 1.3e-15 85.5 44 86.4
Gorai.010G236600 Gossypium raimondii HOM05D004494 ORTHO05D005493 1.3e-15 85.5 44 86.4
Thecc.06G057100 Theobroma cacao HOM05D004494 ORTHO05D005493 1.3e-15 85.5 44 86.4
Aqoxy5G00339 Aquilegia oxysepala HOM05D004494 ORTHO05D005493 1.8e-15 85.1 44 86.4
Lsat_1_v5_gn_9_103341 Lactuca sativa HOM05D000133 ORTHO05D005913 1.8e-15 85.1 44 86.4
SalBow1G8446 Salvia bowleyana HOM05D004494 ORTHO05D005493 1.8e-15 85.1 47 80.9
SalBow3G4220 Salvia bowleyana HOM05D004494 ORTHO05D005493 1.8e-15 85.1 47 80.9
SalBow6G4049 Salvia bowleyana HOM05D004494 ORTHO05D005493 1.8e-15 85.1 47 80.9
THA.LOC104810404 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 2.3e-15 84.7 44 86.4
Migut.H02056 Erythranthe guttata HOM05D004494 ORTHO05D005493 3.0e-15 84.3 44 84.1
Migut.M00671 Erythranthe guttata HOM05D004494 ORTHO05D005493 3.0e-15 84.3 44 84.1
MBI06_g27491_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 3.0e-15 84.3 52 76.9
Nn4g25134 Nelumbo nucifera HOM05D004494 ORTHO05D005493 3.0e-15 84.3 47 78.7
Ah.06g192750 Amaranthus hybridus HOM05D006004 ORTHO05D006976 3.9e-15 84.0 44 84.1
EL10Ac5g11725 Beta vulgaris HOM05D004494 ORTHO05D005493 3.9e-15 84.0 44 84.1
CSS0001708 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.9e-15 84.0 44 84.1
CSS0021691 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.9e-15 84.0 44 84.1
CSS0025595 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.9e-15 84.0 44 84.1
CSS0034931 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 3.9e-15 84.0 44 84.1
CARHR043990 Cardamine hirsuta HOM05D004494 ORTHO05D005493 3.9e-15 84.0 48 81.2
CARHR213360 Cardamine hirsuta HOM05D004494 ORTHO05D005493 3.9e-15 84.0 48 81.2
AUR62038701 Chenopodium quinoa HOM05D004494 ORTHO05D005493 3.9e-15 84.0 44 84.1
Hma1.2p1_0854F.1_g228840 Hydrangea macrophylla HOM05D004494 ORTHO05D005493 3.9e-15 84.0 44 84.1
Oeu058437.1 Olea europaea HOM05D004494 ORTHO05D005493 3.9e-15 84.0 44 84.1
Hund02298 Selenicereus undatus HOM05D004494 ORTHO05D005493 3.9e-15 84.0 44 84.1
Hund10311 Selenicereus undatus HOM05D004494 ORTHO05D005493 3.9e-15 84.0 44 84.1
GSVIVG01012569001 Vitis vinifera HOM05D004494 ORTHO05D005493 3.9e-15 84.0 44 84.1
GSVIVG01035228001 Vitis vinifera HOM05D004494 ORTHO05D005493 3.9e-15 84.0 44 84.1
ClCG01G014780 Citrullus lanatus HOM05D004494 ORTHO05D005493 5.1e-15 83.6 44 84.1
MELO3C002173.2 Cucumis melo HOM05D004494 ORTHO05D005493 5.1e-15 83.6 44 84.1
MELO3C008157.2 Cucumis melo HOM05D004494 ORTHO05D005493 5.1e-15 83.6 44 84.1
CsaV3_1G007550 Cucumis sativus L. HOM05D004494 ORTHO05D005493 5.1e-15 83.6 44 84.1
DCAR_021072 Daucus carota HOM05D004494 ORTHO05D005493 5.1e-15 83.6 44 84.1
Gohir.A11G001800 Gossypium hirsutum HOM05D004494 ORTHO05D005493 5.1e-15 83.6 44 84.1
Sed0027035 Sechium edule HOM05D004494 ORTHO05D005493 5.1e-15 83.6 44 86.4
CiPaw.16G074500 Carya illinoinensis HOM05D004494 ORTHO05D005493 6.7e-15 83.2 44 84.1
Ciclev10017429m.g Citrus clementina HOM05D004494 ORTHO05D005493 6.7e-15 83.2 44 84.1
Glyma.09G164200 Glycine max HOM05D004494 ORTHO05D005493 6.7e-15 83.2 44 84.1
Glyma.16G212700 Glycine max HOM05D004494 ORTHO05D005493 6.7e-15 83.2 44 84.1
Lj2g0005437 Lotus japonicus HOM05D004494 ORTHO05D005493 6.7e-15 83.2 44 84.1
Lj2g0023891 Lotus japonicus HOM05D004494 ORTHO05D005493 6.7e-15 83.2 44 84.1
Lalb_Chr08g0237121 Lupinus albus HOM05D004494 ORTHO05D005493 6.7e-15 83.2 44 84.1
Manes.10G081901 Manihot esculenta HOM05D004494 ORTHO05D005493 6.7e-15 83.2 44 84.1
Phvul.004G138700 Phaseolus vulgaris HOM05D004494 ORTHO05D005493 6.7e-15 83.2 44 84.1
Potri.011G144800 Populus trichocarpa HOM05D004494 ORTHO05D005493 6.7e-15 83.2 44 84.1
AL7G48542 Arabidopsis lyrata HOM05D004494 ORTHO05D005493 8.7e-15 82.8 45 84.4
HanXRQChr09g0257491 Helianthus annuus HOM05D004494 ORTHO05D005493 8.7e-15 82.8 44 84.1
HanXRQChr15g0468731 Helianthus annuus HOM05D004494 ORTHO05D005493 8.7e-15 82.8 44 84.1
arahy.Tifrunner.gnm1.ann1.93HXT6 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.1e-14 82.4 48 72.9
Aa31LG10G1570 Aethionema arabicum HOM05D004494 ORTHO05D005493 1.5e-14 82.0 44 84.1
Carub.0007s3448 Capsella rubella HOM05D004494 ORTHO05D005493 1.5e-14 82.0 49 81.6
Cpa.g.sc25.208 Carica papaya HOM05D004494 ORTHO05D005493 1.5e-14 82.0 44 81.8
PSO673G0024 Papaver somniferum HOM05D004494 ORTHO05D005493 1.5e-14 82.0 44 81.8
Sed0010347 Sechium edule HOM05D004494 ORTHO05D005493 1.5e-14 82.0 44 81.8
TWI36G0745 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 1.5e-14 82.0 44 81.8
arahy.Tifrunner.gnm1.ann1.UPEY1W Arachis hypogaea HOM05D004494 ORTHO05D005493 1.9e-14 81.6 44 81.8
Oeu059243.2 Olea europaea HOM05D004494 ORTHO05D005493 1.9e-14 81.6 44 81.8
vmacro09451 Vaccinium macrocarpon HOM05D004494 ORTHO05D005493 1.9e-14 81.6 44 81.8
PGR083G0484 Punica granatum HOM05D004494 ORTHO05D005493 2.5e-14 81.3 44 84.1
arahy.Tifrunner.gnm1.ann1.I96U63 Arachis hypogaea HOM05D004494 ORTHO05D005493 3.3e-14 80.9 44 81.8
arahy.Tifrunner.gnm1.ann1.WE4FU2 Arachis hypogaea HOM05D004494 ORTHO05D005493 3.3e-14 80.9 49 73.5
GSVIVG01012562001 Vitis vinifera HOM05D004494 ORTHO05D005493 3.3e-14 80.9 44 81.8
Ca_07598_v3 Cicer arietinum L. HOM05D004494 ORTHO05D005493 4.3e-14 80.5 44 79.5
Os01g0530366 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 4.3e-14 80.5 42 85.7
PGSC0003DMG400021289 Solanum tuberosum HOM05D004494 ORTHO05D005493 4.3e-14 80.5 51 72.5
Medtr7g066240 Medicago truncatula HOM05D004494 ORTHO05D005493 5.6e-14 80.1 44 81.8
CAN.G904.11 Capsicum annuum HOM05D004494 ORTHO05D005493 7.4e-14 79.7 45 82.2
Nitab4.5_0000923g0150 Nicotiana tabacum HOM05D004494 ORTHO05D005493 7.4e-14 79.7 45 82.2
Nitab4.5_0002209g0130 Nicotiana tabacum HOM05D004494 ORTHO05D005493 7.4e-14 79.7 45 82.2
Solyc10g007650.3 Solanum lycopersicum HOM05D004494 ORTHO05D005493 7.4e-14 79.7 45 82.2
TWI81G0978 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 7.4e-14 79.7 44 79.5
Psat3g135240 Pisum sativum HOM05D004494 ORTHO05D005493 9.6e-14 79.3 44 79.5
TPR.G34872 Trifolium pratense HOM05D004494 ORTHO05D005493 9.6e-14 79.3 44 81.8
PSO782G1294 Papaver somniferum HOM05D004494 ORTHO05D005493 1.3e-13 79.0 44 77.3
PSO421G0336 Papaver somniferum HOM05D004494 ORTHO05D005493 1.6e-13 78.6 42 81.0
PSO421G0392 Papaver somniferum HOM05D004494 ORTHO05D005493 1.6e-13 78.6 42 81.0
CANSAT11G2181 Cannabis sativa HOM05D004494 ORTHO05D005493 2.8e-13 77.8 39 87.2
Mapoly0066s0049 Marchantia polymorpha HOM05D004494 ORTHO05D005493 3.7e-13 77.4 39 87.2
Pp3c24_13920 Physcomitrium patens HOM05D004494 ORTHO05D005493 3.7e-13 77.4 39 87.2
QL10p045758 Quercus lobata HOM05D004494 ORTHO05D005493 3.7e-13 77.4 44 79.5
QL10p046170 Quercus lobata HOM05D004494 ORTHO05D005493 3.7e-13 77.4 44 79.5
PSO063G6745 Papaver somniferum HOM05D004494 ORTHO05D005493 4.8e-13 77.0 40 82.5
GSVIVG01012570001 Vitis vinifera HOM05D004494 ORTHO05D005493 4.8e-13 77.0 40 82.5
BcaC08g44099 Brassica carinata HOM05D004494 ORTHO05D005493 1.1e-12 75.9 80 52.5
CiPaw.06G022300 Carya illinoinensis HOM05D004494 ORTHO05D005493 1.1e-12 75.9 44 79.5
SMO145G0179 Selaginella moellendorffii HOM05D004494 ORTHO05D005493 1.1e-12 75.9 39 84.6
arahy.Tifrunner.gnm1.ann1.YVY1FB Arachis hypogaea HOM05D004494 ORTHO05D005493 1.4e-12 75.5 43 76.7
Aa31LG1G19660 Aethionema arabicum HOM05D004494 ORTHO05D005493 4.0e-12 73.9 44 68.2
Aa31LG8G1870 Aethionema arabicum HOM05D004494 ORTHO05D005493 4.0e-12 73.9 44 68.2
Prupe.4G246000 Prunus persica HOM05D004494 ORTHO05D005493 4.0e-12 73.9 44 77.3
Prupe.5G244400 Prunus persica HOM05D004494 ORTHO05D005493 4.0e-12 73.9 44 77.3
QL09p054324 Quercus lobata HOM05D004494 ORTHO05D005493 4.0e-12 73.9 44 77.3
Aa31LG1G19360 Aethionema arabicum HOM05D004494 ORTHO05D005493 6.9e-12 73.2 48 62.5
arahy.Tifrunner.gnm1.ann1.DLM5V3 Arachis hypogaea HOM05D004494 ORTHO05D005493 6.9e-12 73.2 44 75.0
Peaxi162Scf00111g00531 Petunia axillaris HOM05D004494 ORTHO05D005493 3.4e-11 70.9 66 56.1
RcHm_v2.0_Chr7g0177031 Rosa chinensis HOM05D004494 ORTHO05D005493 4.5e-11 70.5 42 76.2
FvH4_5g18480 Fragaria vesca HOM05D004494 ORTHO05D005493 7.6e-11 69.7 46 73.9
FAN08G0913 Fragaria x ananassa HOM05D004494 ORTHO05D005493 7.6e-11 69.7 46 73.9
FAN18G1159 Fragaria x ananassa HOM05D004494 ORTHO05D005493 7.6e-11 69.7 46 73.9
SEGI_39556 Sequoiadendron giganteum HOM05D004494 ORTHO05D005493 9.9e-11 69.3 39 82.1
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 2.2e-10 68.2 39 76.9
MBI16_g26393_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 2.2e-10 68.2 42 71.4
MD12G1077100 Malus domestica HOM05D004494 ORTHO05D005493 3.8e-10 67.4 39 79.5
MD14G1071000 Malus domestica HOM05D004494 ORTHO05D005493 3.8e-10 67.4 39 79.5
C08p50400 Brassica napus HOM05D004494 ORTHO05D005493 4.9e-10 67.0 31 93.5
PRCOL_00006868 Prasinoderma coloniale HOM05D004494 ORTHO05D005493 1.9e-09 65.1 35 77.1
C05p31860 Brassica napus HOM05D004494 ORTHO05D005493 4.2e-09 63.9 33 87.9
BolC5t31914H Brassica oleracea HOM05D004494 ORTHO05D005493 4.2e-09 63.9 33 87.9
AT1G53690 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 9.3e-09 62.8 39 69.2
Rhsim04G0032100 Rhododendron simsii HOM05D004494 ORTHO05D005493 1.2e-08 62.4 33 84.8
arahy.Tifrunner.gnm1.ann1.S5KS5D Arachis hypogaea HOM05D004494 ORTHO05D005493 1.6e-08 62.0 34 82.4
Cre07.g342352 Chlamydomonas reinhardtii HOM05D004494 ORTHO05D005493 1.6e-08 62.0 37 70.3
Carub.0001s4296 Capsella rubella HOM05D004494 ORTHO05D005493 2.7e-08 61.2 40 65.0
MD14G1070900 Malus domestica HOM05D004494 ORTHO05D005493 3.5e-08 60.8 44 61.4
Mapoly0119s0017 Marchantia polymorpha HOM05D004494 ORTHO05D005493 6.0e-08 60.1 35 77.1
Os07g0105100 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 2.3e-07 58.2 46 58.7
Prupe.4G215400 Prunus persica HOM05D004494 ORTHO05D005493 5.1e-07 57.0 53 52.8
Aa31LG1G19670 Aethionema arabicum HOM05D000171 ORTHO05D000101 2.5e-06 54.7 31 74.2


User provided reference genes

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