Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 4.8e-146 521.2 266 100.0
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 6.9e-145 517.3 266 99.6
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 6.9e-145 517.3 266 99.6
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 6.9e-145 517.3 266 99.6
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 3.4e-144 515.0 264 99.6
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 1.1e-142 510.0 266 98.5
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 3.6e-141 505.0 266 97.4
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 6.1e-141 504.2 266 97.4
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 6.1e-141 504.2 266 97.4
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 5.1e-140 501.1 266 97.0
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 5.1e-140 501.1 266 97.0
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 2.6e-139 498.8 266 96.6
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 9.7e-139 496.9 266 95.5
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 1.8e-137 492.7 266 95.9
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 3.1e-137 491.9 266 95.1
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 3.4e-136 488.4 266 94.7
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 1.0e-135 486.9 266 94.4
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 1.9e-134 482.6 262 95.0
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 1.8e-132 476.1 269 92.6
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 2.0e-115 419.5 271 82.7
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 5.5e-110 401.4 272 79.4
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 9.5e-110 400.6 272 79.4
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 8.0e-109 397.5 279 76.7
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 6.8e-108 394.4 279 76.3
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 6.8e-108 394.4 279 76.3
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 8.8e-108 394.0 273 78.8
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 2.6e-107 392.5 272 78.7
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 5.7e-107 391.3 275 77.5
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 3.7e-106 388.7 276 76.4
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 3.7e-106 388.7 272 75.7
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 1.1e-105 387.1 273 75.8
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 1.8e-105 386.3 274 74.1
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 2.4e-105 386.0 273 76.9
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 7.0e-105 384.4 275 75.3
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 1.6e-104 383.3 254 79.5
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 1.6e-104 383.3 277 75.8
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 2.0e-104 382.9 273 75.5
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 3.5e-104 382.1 277 76.2
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 3.5e-104 382.1 277 76.2
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 3.5e-104 382.1 268 76.5
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 3.5e-104 382.1 272 75.4
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 3.5e-104 382.1 270 75.9
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 5.9e-104 381.3 270 76.3
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 5.9e-104 381.3 278 73.7
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 5.9e-104 381.3 282 74.1
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 1.3e-103 380.2 273 76.6
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 2.3e-103 379.4 271 75.6
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 2.3e-103 379.4 272 74.3
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 2.9e-103 379.0 277 74.7
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 3.8e-103 378.6 279 74.9
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 6.6e-103 377.9 269 76.2
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 1.5e-102 376.7 276 75.0
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 1.5e-102 376.7 270 75.9
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 2.5e-102 375.9 272 76.1
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 3.3e-102 375.6 269 75.5
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 3.3e-102 375.6 268 75.7
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 4.3e-102 375.2 280 73.6
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 4.3e-102 375.2 275 74.9
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 5.6e-102 374.8 273 75.8
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 5.6e-102 374.8 273 74.7
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 5.6e-102 374.8 276 72.1
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 7.3e-102 374.4 274 74.5
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 7.3e-102 374.4 271 75.6
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 9.5e-102 374.0 274 74.1
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 9.5e-102 374.0 269 75.5
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 1.2e-101 373.6 273 74.7
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 1.2e-101 373.6 273 74.7
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 1.6e-101 373.2 275 73.1
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 1.6e-101 373.2 274 74.1
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 2.1e-101 372.9 268 74.3
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 2.8e-101 372.5 276 73.9
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 2.8e-101 372.5 272 73.5
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 3.6e-101 372.1 273 71.4
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 8.0e-101 370.9 271 74.9
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 1.0e-100 370.5 214 88.8
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 1.0e-100 370.5 270 72.6
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 1.8e-100 369.8 263 74.1
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 4.0e-100 368.6 280 71.8
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 6.8e-100 367.9 278 73.4
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 8.9e-100 367.5 278 73.4
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 2.0e-99 366.3 274 73.4
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.0e-99 366.3 274 73.7
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 3.4e-99 365.5 273 71.4
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 5.7e-99 364.8 280 73.2
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 5.7e-99 364.8 279 70.3
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 9.8e-99 364.0 278 72.7
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 1.7e-98 363.2 281 71.9
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 2.2e-98 362.8 224 84.4
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 3.7e-98 362.1 271 70.8
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 3.7e-98 362.1 272 71.7
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 6.4e-98 361.3 274 73.7
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 6.4e-98 361.3 274 71.2
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 8.3e-98 360.9 269 73.6
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 8.3e-98 360.9 272 72.8
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 2.4e-97 359.4 272 71.7
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 3.2e-97 359.0 273 70.7
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 5.4e-97 358.2 271 74.2
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 9.2e-97 357.5 214 85.5
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 9.2e-97 357.5 284 69.7
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 2.0e-96 356.3 273 72.9
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 2.7e-96 355.9 198 90.4
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 2.7e-96 355.9 274 71.5
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 4.6e-96 355.1 275 72.4
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 5.9e-96 354.8 269 73.6
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 7.8e-96 354.4 230 80.9
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 1.0e-95 354.0 281 70.5
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 1.0e-95 354.0 272 71.3
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 1.7e-95 353.2 290 69.7
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 6.6e-95 351.3 270 71.9
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 3.3e-94 349.0 277 69.7
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 4.3e-94 348.6 274 71.2
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 7.3e-94 347.8 277 70.0
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 9.5e-94 347.4 278 70.5
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 4.7e-93 345.1 269 72.1
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 1.2e-91 340.5 272 69.5
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 1.2e-91 340.5 272 69.9
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 1.2e-88 330.5 193 85.0
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 4.7e-85 318.5 213 76.5
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 4.0e-84 315.5 218 75.2
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 8.9e-84 314.3 221 75.6
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 4.4e-83 312.0 196 79.6
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 8.1e-77 291.2 169 86.4
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 2.4e-76 289.7 238 68.9
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 2.4e-65 253.1 159 82.4
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 3.5e-64 249.2 134 93.3
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 3.6e-61 239.2 192 70.8
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 5.3e-60 235.3 194 70.6
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 4.5e-59 232.3 161 70.2
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 1.8e-55 220.3 198 65.7
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 1.4e-52 210.7 164 63.4
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 2.5e-46 189.9 273 48.7
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.0e-42 177.9 124 72.6
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 1.3e-39 167.5 96 84.4
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 1.3e-39 167.5 232 48.7
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 5.1e-39 165.6 146 65.1
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 4.8e-37 159.1 184 50.0
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 4.8e-37 159.1 184 50.0
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 9.7e-22 108.2 80 76.2
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 2.6e-19 100.1 109 56.0
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 4.5e-11 72.8 194 32.0
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 1.7e-10 70.9 175 30.3
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 5.5e-09 65.9 38 84.2
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 2.7e-08 63.5 38 84.2
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 6.7e-07 58.9 60 48.3


User provided reference genes

Program Settings