Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 2.1e-140 502.3 244 100.0
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 1.4e-136 489.6 245 98.4
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 1.3e-134 483.0 245 97.1
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 1.3e-134 483.0 245 96.3
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 2.3e-134 482.3 245 96.3
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 2.3e-131 472.2 244 92.2
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 6.8e-131 470.7 244 93.0
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 7.1e-128 460.7 244 90.2
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 1.2e-127 459.9 244 88.9
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 1.1e-125 453.4 244 87.3
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 2.5e-125 452.2 244 86.9
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 4.3e-125 451.4 244 87.3
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 2.0e-122 442.6 244 86.5
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 3.9e-118 428.3 244 82.4
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 2.3e-110 402.5 244 75.8
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 2.5e-109 399.1 241 77.2
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 2.8e-108 395.6 241 75.9
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 4.8e-108 394.8 241 75.5
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 4.8e-108 394.8 241 75.9
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 1.4e-107 393.3 241 75.1
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 1.8e-107 392.9 244 75.4
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 3.1e-107 392.1 241 76.8
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 6.9e-107 391.0 241 75.5
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 6.9e-107 391.0 241 75.5
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 4.5e-106 388.3 241 75.1
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 7.6e-106 387.5 244 73.4
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 7.6e-106 387.5 244 73.0
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 9.9e-106 387.1 241 75.9
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.3e-105 386.7 244 74.2
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 2.2e-105 386.0 241 75.5
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 2.2e-105 386.0 244 73.4
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 2.2e-105 386.0 244 73.4
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 6.4e-105 384.4 244 73.4
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 8.4e-105 384.0 239 74.1
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 1.1e-104 383.6 242 73.1
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 1.4e-104 383.3 244 73.0
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 1.9e-104 382.9 244 72.1
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 2.4e-104 382.5 244 73.4
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 3.2e-104 382.1 244 73.0
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 5.4e-104 381.3 241 73.4
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 5.4e-104 381.3 241 73.4
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 1.2e-103 380.2 238 74.4
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 1.6e-103 379.8 244 70.9
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 3.5e-103 378.6 244 70.9
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 3.5e-103 378.6 244 71.7
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 4.6e-103 378.3 244 71.7
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 4.6e-103 378.3 244 72.1
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 4.6e-103 378.3 242 70.7
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 6.0e-103 377.9 241 73.4
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 1.0e-102 377.1 242 74.0
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 1.3e-102 376.7 241 70.5
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 1.8e-102 376.3 246 72.8
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 1.8e-102 376.3 242 71.9
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 1.8e-102 376.3 244 71.7
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 2.3e-102 375.9 244 70.9
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 2.3e-102 375.9 242 71.9
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 3.9e-102 375.2 242 72.7
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 3.9e-102 375.2 244 72.1
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 5.1e-102 374.8 239 72.4
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 6.7e-102 374.4 244 70.9
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 8.7e-102 374.0 242 70.2
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 8.7e-102 374.0 272 66.5
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 1.9e-101 372.9 244 70.9
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 2.5e-101 372.5 241 71.8
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 2.5e-101 372.5 241 73.0
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 3.3e-101 372.1 242 69.8
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 4.3e-101 371.7 242 70.7
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 7.4e-101 370.9 241 70.5
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 7.4e-101 370.9 260 67.3
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 2.1e-100 369.4 245 69.4
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 6.2e-100 367.9 282 64.5
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 9.0e-99 364.0 239 69.9
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 9.0e-99 364.0 226 74.3
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 1.5e-98 363.2 230 72.6
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 5.8e-98 361.3 254 69.7
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 1.3e-97 360.1 293 59.4
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 1.3e-97 360.1 273 65.2
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 1.7e-97 359.8 241 71.4
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 2.9e-97 359.0 239 68.6
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 4.2e-96 355.1 242 68.6
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 5.5e-96 354.8 241 67.2
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 7.1e-96 354.4 229 72.5
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 2.1e-95 352.8 241 67.2
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 2.3e-94 349.4 228 70.6
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 1.1e-93 347.1 241 66.0
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 4.3e-93 345.1 241 68.0
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 2.1e-92 342.8 241 65.1
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 5.3e-91 338.2 244 67.2
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 9.0e-91 337.4 244 64.8
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 1.0e-89 334.0 207 72.9
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 3.2e-88 328.9 281 56.6
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 9.3e-88 327.4 327 54.1
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 2.1e-87 326.2 202 75.2
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 5.1e-86 321.6 210 69.5
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 5.7e-85 318.2 203 72.4
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 3.1e-83 312.4 256 57.8
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 4.1e-83 312.0 212 67.5
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 2.7e-79 299.3 298 52.0
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 7.9e-79 297.7 241 59.8
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 2.3e-78 296.2 250 53.6
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 6.7e-78 294.7 241 59.3
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 7.4e-77 291.2 212 67.5
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 6.1e-71 271.6 316 45.3
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 2.2e-65 253.1 257 49.4
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 5.5e-64 248.4 249 51.8
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 1.2e-58 230.7 253 47.0
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 2.1e-55 219.9 250 46.8
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 4.7e-55 218.8 256 45.3
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 3.1e-51 206.1 343 39.1
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.3e-49 200.7 120 77.5
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 5.0e-49 198.7 131 71.8
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 9.4e-48 194.5 120 80.8
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 1.3e-44 184.1 108 75.0
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 6.3e-36 155.2 94 77.7
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 8.6e-33 144.8 85 70.6
A01p41990 Brassica napus HOM05D005979 ORTHO05D041676 3.1e-22 109.8 179 43.6
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 4.0e-22 109.4 83 60.2
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 4.0e-22 109.4 83 60.2
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 4.4e-21 105.9 57 77.2
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 1.4e-19 100.9 51 92.2
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 7.0e-19 98.6 51 90.2
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 7.0e-19 98.6 51 90.2
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 6.0e-18 95.5 75 58.7
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 2.5e-16 90.1 65 66.2
BolC1t05773H Brassica oleracea HOM05D005979 ORTHO05D007848 1.1e-14 84.7 43 88.4
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 2.3e-14 83.6 60 61.7
BcaC09g47773 Brassica carinata HOM05D005979 ORTHO05D007848 2.4e-11 73.6 38 86.8
BraA01t04267Z Brassica rapa HOM05D005979 ORTHO05D041676 4.1e-11 72.8 38 86.8
CBR_g27740 Chara braunii HOM05D000738 ORTHO05D000675 1.0e-09 68.2 73 43.8
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 2.4e-06 57.0 65 43.1
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 4.0e-06 56.2 73 42.5
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 8.9e-06 55.1 77 37.7
PRCOL_00006618 Prasinoderma coloniale HOM05D000738 ORTHO05D000675 8.9e-06 55.1 56 42.9


User provided reference genes

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