Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
C05p54650 Brassica napus HOM05D004885 ORTHO05D006124 1.5e-83 312.8 154 100.0
BolC5t34133H Brassica oleracea HOM05D004885 ORTHO05D006124 1.5e-83 312.8 154 100.0
C05p60690 Brassica napus HOM05D001895 ORTHO05D002082 9.5e-54 213.8 127 87.4
BolC5t34729H Brassica oleracea HOM05D004885 ORTHO05D006124 2.1e-53 212.6 127 86.6
BraA05t22870Z Brassica rapa HOM05D004885 ORTHO05D006124 2.1e-53 212.6 128 85.9
A05p41490 Brassica napus HOM05D001895 ORTHO05D002082 8.0e-53 210.7 127 85.0
Thhalv10020408m.g Eutrema salsugineum HOM05D004885 ORTHO05D006124 2.7e-48 195.7 127 79.5
Sp3g05480 Schrenkiella parvula HOM05D004885 ORTHO05D006124 2.7e-48 195.7 127 80.3
AT3G06540 Arabidopsis thaliana HOM05D004885 ORTHO05D006124 5.6e-46 188.0 127 74.8
AL3G17570 Arabidopsis lyrata HOM05D004885 ORTHO05D006124 1.2e-45 186.8 119 78.2
BraA01t04432Z Brassica rapa HOM05D001895 ORTHO05D002082 2.1e-45 186.0 127 74.8
Carub.0003s0600 Capsella rubella HOM05D004885 ORTHO05D006124 4.0e-44 181.8 127 74.0
Aa31LG5G17090 Aethionema arabicum HOM05D004885 ORTHO05D006124 1.3e-42 176.8 128 73.4
BNapus_Darmor_BZH_scaffold_118p00060 Brassica napus HOM05D001895 ORTHO05D002082 1.9e-38 162.9 127 66.9
THA.LOC104823506 Tarenaya hassleriana HOM05D004885 ORTHO05D006124 6.2e-37 157.9 127 63.8
Sabra05G0033700 Salix brachista HOM05D004885 ORTHO05D006124 8.6e-31 137.5 130 56.9
Potri.005G028900 Populus trichocarpa HOM05D004885 ORTHO05D006124 1.1e-30 137.1 130 57.7
Potri.005G030000 Populus trichocarpa HOM05D004885 ORTHO05D006124 1.1e-30 137.1 130 57.7
Ciclev10025327m.g Citrus clementina HOM05D004885 ORTHO05D006124 1.9e-30 136.3 130 56.9
Gohir.D07G177700 Gossypium hirsutum HOM05D004885 ORTHO05D006124 2.5e-30 136.0 130 60.0
Gorai.001G198800 Gossypium raimondii HOM05D004885 ORTHO05D006124 2.5e-30 136.0 130 60.0
Gohir.A07G170900 Gossypium hirsutum HOM05D004885 ORTHO05D006124 1.2e-29 133.7 130 59.2
COL.COLO4_10588 Corchorus olitorius HOM05D004885 ORTHO05D006124 1.6e-29 133.3 130 56.2
Duzib147G0190 Durio zibethinus HOM05D004885 ORTHO05D006124 1.6e-29 133.3 130 56.2
Glyma.01G159000 Glycine max HOM05D004885 ORTHO05D006124 3.6e-29 132.1 126 55.6
TPR.G39534 Trifolium pratense HOM05D004885 ORTHO05D006124 3.6e-29 132.1 115 58.3
Atru.chr3.136 Acer truncatum HOM05D004885 ORTHO05D006124 4.7e-29 131.7 130 53.1
Dinv40183 Davidia involucrata HOM05D004885 ORTHO05D006124 8.1e-29 131.0 122 56.6
TWI09G0982 Tripterygium wilfordii HOM05D004885 ORTHO05D006124 1.1e-28 130.6 130 53.8
TWI53G2056 Tripterygium wilfordii HOM05D004885 ORTHO05D006124 1.1e-28 130.6 130 54.6
VMungo1215G0823 Vigna mungo HOM05D004885 ORTHO05D006124 1.1e-28 130.6 126 56.3
Thecc.01G005900 Theobroma cacao HOM05D004885 ORTHO05D006124 1.8e-28 129.8 130 53.8
CiPaw.06G030500 Carya illinoinensis HOM05D004885 ORTHO05D006124 3.1e-28 129.0 125 55.2
CSS0014238 Camellia sinensis var. sinensis HOM05D004885 ORTHO05D006124 4.0e-28 128.6 130 51.5
arahy.Tifrunner.gnm1.ann1.E2QT4D Arachis hypogaea HOM05D004885 ORTHO05D006124 5.2e-28 128.3 126 52.4
arahy.Tifrunner.gnm1.ann1.P2H8QY Arachis hypogaea HOM05D004885 ORTHO05D006124 5.2e-28 128.3 126 52.4
Phvul.002G116400 Phaseolus vulgaris HOM05D004885 ORTHO05D006124 8.9e-28 127.5 126 54.8
GSVIVG01026648001 Vitis vinifera HOM05D004885 ORTHO05D006124 8.9e-28 127.5 140 51.4
Glyma.11G085700 Glycine max HOM05D004885 ORTHO05D006124 1.2e-27 127.1 127 53.5
PGR102G0956 Punica granatum HOM05D004885 ORTHO05D006124 1.2e-27 127.1 125 55.2
Atru.chr4.1890 Acer truncatum HOM05D004885 ORTHO05D006124 1.5e-27 126.7 130 52.3
Haze_00453 Corylus avellana HOM05D004885 ORTHO05D006124 2.0e-27 126.3 130 52.3
Lj2g0026862 Lotus japonicus HOM05D004885 ORTHO05D006124 2.0e-27 126.3 115 56.5
AUR62033951 Chenopodium quinoa HOM05D004885 ORTHO05D006124 2.6e-27 125.9 130 53.1
Lalb_Chr09g0324741 Lupinus albus HOM05D004885 ORTHO05D006124 3.4e-27 125.6 126 54.0
Manes.01G155100 Manihot esculenta HOM05D004885 ORTHO05D006124 4.4e-27 125.2 117 58.1
Medtr5g024150 Medicago truncatula HOM05D004885 ORTHO05D006124 4.4e-27 125.2 114 57.0
Sed0002359 Sechium edule HOM05D004885 ORTHO05D006124 4.4e-27 125.2 130 53.1
Actinidia22902 Actinidia chinensis HOM05D004885 ORTHO05D006124 9.9e-27 124.0 127 50.4
CsaV3_3G000260 Cucumis sativus L. HOM05D004885 ORTHO05D006124 9.9e-27 124.0 127 53.5
DCAR_006252 Daucus carota HOM05D004885 ORTHO05D006124 9.9e-27 124.0 130 50.8
TAR629G2658 Trochodendron aralioides HOM05D004885 ORTHO05D006124 9.9e-27 124.0 127 52.8
ECA238G4274 Erigeron canadensis HOM05D004885 ORTHO05D006124 1.3e-26 123.6 130 49.2
CSS0037388 Camellia sinensis var. sinensis HOM05D004885 ORTHO05D006124 1.7e-26 123.2 130 48.5
Lj4C235G2 Lonicera japonica HOM05D004885 ORTHO05D006124 1.7e-26 123.2 146 47.9
Dinv08168 Davidia involucrata HOM05D004885 ORTHO05D006124 6.4e-26 121.3 122 54.1
Ah.14g085190 Amaranthus hybridus HOM05D004885 ORTHO05D006124 1.4e-25 120.2 118 56.8
Eucgr.I02226 Eucalyptus grandis HOM05D004885 ORTHO05D006124 2.4e-25 119.4 130 50.8
CANSAT80G0225 Cannabis sativa HOM05D004885 ORTHO05D006124 5.4e-25 118.2 125 51.2
HanXRQChr14g0442521 Helianthus annuus HOM05D004885 ORTHO05D006124 7.1e-25 117.9 127 51.2
Lsat_1_v5_gn_2_73361 Lactuca sativa HOM05D004885 ORTHO05D006124 9.3e-25 117.5 130 48.5
MD15G1232400 Malus domestica HOM05D004885 ORTHO05D006124 9.3e-25 117.5 125 52.8
Nn4g22671 Nelumbo nucifera HOM05D004885 ORTHO05D006124 9.3e-25 117.5 115 56.5
Migut.C00024 Erythranthe guttata HOM05D004885 ORTHO05D006124 1.2e-24 117.1 130 48.5
PSO386G0181 Papaver somniferum HOM05D004885 ORTHO05D006124 1.2e-24 117.1 129 53.5
Hma1.2p1_0085F.1_g044730 Hydrangea macrophylla HOM05D004885 ORTHO05D006124 1.6e-24 116.7 126 48.4
Prupe.7G181700 Prunus persica HOM05D004885 ORTHO05D006124 1.6e-24 116.7 117 55.6
Nitab4.5_0006177g0010 Nicotiana tabacum HOM05D004885 ORTHO05D006124 2.1e-24 116.3 130 50.8
QL04p013021 Quercus lobata HOM05D004885 ORTHO05D006124 2.7e-24 115.9 130 49.2
QL04p012404 Quercus lobata HOM05D004885 ORTHO05D006124 3.5e-24 115.5 130 49.2
Hma1.2p1_0300F.1_g118050 Hydrangea macrophylla HOM05D004885 ORTHO05D006124 4.6e-24 115.2 125 47.2
PSO724G1376 Papaver somniferum HOM05D004885 ORTHO05D006124 4.6e-24 115.2 127 52.8
MBI01_g31987_MAGBIO Magnolia biondii HOM05D004885 ORTHO05D006124 6.0e-24 114.8 122 53.3
Aqoxy3G00208 Aquilegia oxysepala HOM05D004885 ORTHO05D006124 1.0e-23 114.0 128 47.7
AUR62029056 Chenopodium quinoa HOM05D004885 ORTHO05D006124 1.3e-23 113.6 115 53.9
Nitab4.5_0001936g0130 Nicotiana tabacum HOM05D004885 ORTHO05D006124 1.3e-23 113.6 130 49.2
SGA_v2.0_scaffold376G50298 Striga asiatica HOM05D004885 ORTHO05D006124 1.3e-23 113.6 128 49.2
CAN.G1238.6 Capsicum annuum HOM05D004885 ORTHO05D006124 1.7e-23 113.2 130 50.8
Sopen02g027490 Solanum pennellii HOM05D004885 ORTHO05D006124 3.0e-23 112.5 130 50.0
MD02G1117700 Malus domestica HOM05D004885 ORTHO05D006124 3.9e-23 112.1 125 52.0
Rhsim08G0027300 Rhododendron simsii HOM05D004885 ORTHO05D006124 3.9e-23 112.1 131 47.3
EL10Ac8g19196 Beta vulgaris HOM05D004885 ORTHO05D006124 5.1e-23 111.7 139 43.9
MBI15_g00077_MAGBIO Magnolia biondii HOM05D004885 ORTHO05D006124 5.1e-23 111.7 144 45.8
Oeu012449.1 Olea europaea HOM05D004885 ORTHO05D006124 5.1e-23 111.7 130 47.7
Hund03605 Selenicereus undatus HOM05D004885 ORTHO05D006124 5.1e-23 111.7 139 46.8
Solyc02g082730.3 Solanum lycopersicum HOM05D004885 ORTHO05D006124 6.6e-23 111.3 130 50.0
PGSC0003DMG401001521 Solanum tuberosum HOM05D004885 ORTHO05D006124 6.6e-23 111.3 130 50.0
CDE08G1303 Ceratophyllum demersum HOM05D004885 ORTHO05D006124 8.7e-23 110.9 133 47.4
vmacro18463 Vaccinium macrocarpon HOM05D004885 ORTHO05D006124 8.7e-23 110.9 122 49.2
Sc16g0001670 Simmondsia chinensis HOM05D004885 ORTHO05D006124 1.5e-22 110.2 129 46.5
ATR0605G212 Amborella trichopoda HOM05D004885 ORTHO05D006124 1.9e-22 109.8 130 46.9
SGA_v2.0_scaffold334G49087 Striga asiatica HOM05D004885 ORTHO05D006124 1.9e-22 109.8 128 48.4
RcHm_v2.0_Chr2g0097311 Rosa chinensis HOM05D004885 ORTHO05D006124 3.3e-22 109.0 125 45.6
CDE06G1258 Ceratophyllum demersum HOM05D004885 ORTHO05D006124 9.6e-22 107.5 136 43.4
Cc07_g11780 Coffea canephora HOM05D004885 ORTHO05D006124 9.6e-22 107.5 117 52.1
FvH4_1g10450 Fragaria vesca HOM05D004885 ORTHO05D006124 9.6e-22 107.5 125 44.8
FAN26G3465 Fragaria x ananassa HOM05D004885 ORTHO05D006124 1.6e-21 106.7 125 45.6
Nitab4.5_0024681g0010 Nicotiana tabacum HOM05D004885 ORTHO05D006124 2.8e-21 105.9 83 65.1
FAN28G2162 Fragaria x ananassa HOM05D004885 ORTHO05D006124 6.2e-21 104.8 125 45.6
HPP92_017799 Vanilla planifolia HOM05D004885 ORTHO05D006124 6.9e-20 101.3 125 44.0
Psat0s2561g0200 Pisum sativum HOM05D004885 ORTHO05D006124 2.4e-17 92.8 74 63.5
Psat2g149880 Pisum sativum HOM05D004885 ORTHO05D006124 4.2e-17 92.0 80 57.5
MD10G1065000 Malus domestica HOM05D004885 ORTHO05D006124 5.4e-17 91.7 111 45.9
Zm00001eb333020 Zea mays HOM05D004885 ORTHO05D006124 1.2e-16 90.5 126 42.9
SEGI_12272 Sequoiadendron giganteum HOM05D004885 ORTHO05D006124 1.6e-16 90.1 99 47.5
BcaNung06662 Brassica carinata HOM05D004885 ORTHO05D006124 2.1e-16 89.7 71 66.2
Zm00001eb128670 Zea mays HOM05D004885 ORTHO05D006124 2.1e-16 89.7 126 42.1
Cc11_g03220 Coffea canephora HOM05D004885 ORTHO05D006124 4.6e-16 88.6 125 38.4
AagrBONN_evm.TU.Sc2ySwM_117.1017 Anthoceros agrestis HOM05D004885 ORTHO05D006124 6.0e-16 88.2 82 52.4
Mapoly0007s0130 Marchantia polymorpha HOM05D004885 ORTHO05D006124 2.3e-15 86.3 138 39.1
Peaxi162Scf01051g00141 Petunia axillaris HOM05D004885 ORTHO05D006124 3.0e-15 85.9 185 34.1
Pp3c12_25630 Physcomitrium patens HOM05D004885 ORTHO05D006124 5.1e-15 85.1 130 41.5
Cpa.g.sc365.1 Carica papaya HOM05D004885 ORTHO05D006124 1.1e-14 84.0 88 52.3
MD17G1057100 Malus domestica HOM05D004885 ORTHO05D006124 1.5e-14 83.6 114 43.0
CBR_g49718 Chara braunii HOM05D004885 ORTHO05D006124 3.6e-13 79.0 85 48.2
C05p54670 Brassica napus HOM05D046167 ORTHO05D040695 6.2e-13 78.2 55 78.2
BolC5t34136H Brassica oleracea HOM05D046167 ORTHO05D040695 6.2e-13 78.2 55 78.2
unitig_37.g12359 Utricularia gibba HOM05D004885 ORTHO05D006124 5.3e-12 75.1 122 38.5
MELO3C001398.2 Cucumis melo HOM05D001254 ORTHO05D006124 1.2e-11 73.9 95 46.3
Ca_24977_v3 Cicer arietinum L. HOM05D004885 ORTHO05D006124 4.5e-11 72.0 83 48.2
Prupe.6G331900 Prunus persica HOM05D004885 ORTHO05D006124 3.8e-10 68.9 83 45.8
CSS0004140 Camellia sinensis var. sinensis HOM05D004885 ORTHO05D006124 1.6e-08 63.5 41 68.3
CARHR081090 Cardamine hirsuta HOM05D004885 ORTHO05D006124 1.3e-07 60.5 51 60.8
MELO3C013721.2 Cucumis melo HOM05D004885 ORTHO05D006124 3.0e-07 59.3 41 65.9
COL.COLO4_32936 Corchorus olitorius HOM05D004885 ORTHO05D006124 1.5e-06 57.0 64 45.3
QL09p035161 Quercus lobata HOM05D004885 ORTHO05D006124 5.6e-06 55.1 37 62.2
ECA234G1467 Erigeron canadensis HOM05D001561 ORTHO05D001715 7.4e-06 54.7 110 31.8
Lj4g0027332 Lotus japonicus HOM05D001561 ORTHO05D001715 7.4e-06 54.7 110 31.8
Medtr5g025170 Medicago truncatula HOM05D004885 ORTHO05D006124 9.6e-06 54.3 37 64.9


User provided reference genes

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