Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t33523H Brassica oleracea HOM05D017702 ORTHO05D021406 5.1e-72 274.2 134 100.0
BcaC05g28672 Brassica carinata HOM05D017702 ORTHO05D021406 1.8e-69 265.8 134 98.5
BcaC05g28618 Brassica carinata HOM05D017702 ORTHO05D021406 3.2e-29 132.1 138 52.2
C05p47260 Brassica napus HOM05D017702 ORTHO05D021406 3.2e-29 132.1 143 51.0
CARHR144640 Cardamine hirsuta HOM05D017702 ORTHO05D021406 2.7e-12 75.9 135 38.5
Cre03.g197350 Chlamydomonas reinhardtii HOM05D001473 ORTHO05D003934 1.1e-08 63.9 95 35.8
PRCOL_00004307 Prasinoderma coloniale HOM05D001473 ORTHO05D003934 1.8e-08 63.2 95 37.9
Thhalv10001097m.g Eutrema salsugineum HOM05D001473 ORTHO05D003934 8.9e-08 60.8 95 35.8
Atru.chr2.968 Acer truncatum HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Actinidia40002 Actinidia chinensis HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Aa31LG1G5220 Aethionema arabicum HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
ATR0736G172 Amborella trichopoda HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Aqoxy2G03659 Aquilegia oxysepala HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
AL1G20320 Arabidopsis lyrata HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
AT1G09770 Arabidopsis thaliana HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
arahy.Tifrunner.gnm1.ann1.33TMW6 Arachis hypogaea HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
arahy.Tifrunner.gnm1.ann1.8L6PVU Arachis hypogaea HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
arahy.Tifrunner.gnm1.ann1.HJHY8E Arachis hypogaea HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
arahy.Tifrunner.gnm1.ann1.R6YD0H Arachis hypogaea HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
EL10Ac4g09571 Beta vulgaris HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
A06p06440 Brassica napus HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
A08p34350 Brassica napus HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
C05p07840 Brassica napus HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
C08p13180 Brassica napus HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
BolC5t29535H Brassica oleracea HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
BolC8t48947H Brassica oleracea HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
BraA06t23855Z Brassica rapa HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
BraA08t35347Z Brassica rapa HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
CSS0041231 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
CSS0044349 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
CANSAT54G0715 Cannabis sativa HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Carub.0001s0911 Capsella rubella HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
CAN.G1609.5 Capsicum annuum HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
CARHR009740 Cardamine hirsuta HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Cpa.g.sc306.1 Carica papaya HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Cfa002922 Carpinus fangiana HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
CiPaw.04G081100 Carya illinoinensis HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
CDE04G2649 Ceratophyllum demersum HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
CDE07G0773 Ceratophyllum demersum HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
CBR_g39826 Chara braunii HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
AUR62000484 Chenopodium quinoa HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
AUR62006826 Chenopodium quinoa HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Ca_09455_v3 Cicer arietinum L. HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
ClCG06G009620 Citrullus lanatus HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Ciclev10018691m.g Citrus clementina HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Cc02_g08900 Coffea canephora HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
COL.COLO4_15470 Corchorus olitorius HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
MELO3C017522.2 Cucumis melo HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
CsaV3_1G045350 Cucumis sativus L. HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
CsaV3_7G031760 Cucumis sativus L. HOM05D004228 ORTHO05D003934 1.2e-07 60.5 95 35.8
Dinv18449 Davidia involucrata HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Duzib106G1036 Durio zibethinus HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Duzib128G0032 Durio zibethinus HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Duzib177G0283 Durio zibethinus HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
ECA233G2045 Erigeron canadensis HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Migut.F01544 Erythranthe guttata HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Eucgr.B01570 Eucalyptus grandis HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Thhalv10006800m.g Eutrema salsugineum HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
FvH4_6g01950 Fragaria vesca HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
FAN02G1215 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
FAN05G0714 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
FAN05G5604 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
FAN09G1753 Fragaria x ananassa HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Glyma.10G165900 Glycine max HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Glyma.20G223300 Glycine max HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Gohir.A13G167900 Gossypium hirsutum HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Gohir.D11G258300 Gossypium hirsutum HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Gohir.D13G173300 Gossypium hirsutum HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Gorai.007G276500 Gossypium raimondii HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Gorai.013G187200 Gossypium raimondii HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
HanXRQChr08g0225461 Helianthus annuus HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Lsat_1_v5_gn_8_2880 Lactuca sativa HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Lj1g0012496 Lotus japonicus HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Lalb_Chr15g0076051 Lupinus albus HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Lalb_Chr18g0044021 Lupinus albus HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
MD12G1246400 Malus domestica HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Manes.08G139000 Manihot esculenta HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Manes.09G148400 Manihot esculenta HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Medtr7g115550 Medicago truncatula HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Os04g0348300 Oryza sativa ssp. japonica HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
PSO017G2945 Papaver somniferum HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
PSO063G2917 Papaver somniferum HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Phvul.004G090900 Phaseolus vulgaris HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Phvul.L001860 Phaseolus vulgaris HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Psat3g006920 Pisum sativum HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Potri.013G046300 Populus trichocarpa HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Potri.019G018400 Populus trichocarpa HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Prupe.6G349400 Prunus persica HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
QL03p030821 Quercus lobata HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Rhsim05G0175000 Rhododendron simsii HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
RcHm_v2.0_Chr3g0449801 Rosa chinensis HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Sabra19G0028000 Salix brachista HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Sabra19G0030400 Salix brachista HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
SalBow1G0011 Salvia bowleyana HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Sp1g08360 Schrenkiella parvula HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Sed0003092 Sechium edule HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Hund07267 Selenicereus undatus HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
SEGI_20641 Sequoiadendron giganteum HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Sc08g0009190 Simmondsia chinensis HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Solyc04g009950.3 Solanum lycopersicum HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Sopen04g005080 Solanum pennellii HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
PGSC0003DMG400011500 Solanum tuberosum HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
THA.LOC104805779 Tarenaya hassleriana HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
THA.LOC104823763 Tarenaya hassleriana HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
Thecc.05G271600 Theobroma cacao HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
TPR.G6939 Trifolium pratense HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
TWI31G0266 Tripterygium wilfordii HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
TWI79G0745 Tripterygium wilfordii HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
TAR362G0879 Trochodendron aralioides HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
unitig_0.g2788 Utricularia gibba HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
unitig_747.g21794 Utricularia gibba HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
VMungo0464G0145 Vigna mungo HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
GSVIVG01023527001 Vitis vinifera HOM05D001473 ORTHO05D003934 1.2e-07 60.5 95 35.8
AagrBONN_evm.TU.Sc2ySwM_368.3249 Anthoceros agrestis HOM05D001473 ORTHO05D003934 1.5e-07 60.1 95 35.8
BcaC04g22223 Brassica carinata HOM05D001473 ORTHO05D003934 1.5e-07 60.1 95 36.8
C09p21880 Brassica napus HOM05D001473 ORTHO05D003934 1.5e-07 60.1 95 36.8
BolC9t55093H Brassica oleracea HOM05D001473 ORTHO05D003934 1.5e-07 60.1 95 36.8
MD04G1229500 Malus domestica HOM05D001473 ORTHO05D003934 1.5e-07 60.1 96 35.4
Mapoly0014s0195 Marchantia polymorpha HOM05D001473 ORTHO05D003934 1.5e-07 60.1 95 35.8
PGR031G3359 Punica granatum HOM05D001473 ORTHO05D003934 1.5e-07 60.1 95 34.7
SMO196G0202 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 1.5e-07 60.1 95 35.8
SMO234G0053 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 1.5e-07 60.1 95 35.8
SHI00615 Sapria himalayana HOM05D001473 ORTHO05D003934 2.0e-07 59.7 95 35.8
BolC1t01331H Brassica oleracea HOM05D001473 ORTHO05D003934 2.6e-07 59.3 94 37.2
Gohir.A11G247950 Gossypium hirsutum HOM05D001473 ORTHO05D003934 3.4e-07 58.9 95 34.7
Pp3c3_17580 Physcomitrium patens HOM05D001473 ORTHO05D003934 3.4e-07 58.9 95 34.7
A09p17580 Brassica napus HOM05D001473 ORTHO05D003934 4.4e-07 58.5 95 36.8
BraA09t37388Z Brassica rapa HOM05D001473 ORTHO05D003934 4.4e-07 58.5 95 36.8
MCO01G096 Micromonas commoda HOM05D001473 ORTHO05D003934 4.4e-07 58.5 95 33.7
MCO01G097 Micromonas commoda HOM05D001473 ORTHO05D003934 4.4e-07 58.5 95 33.7
BcaB07g31211 Brassica carinata HOM05D001473 ORTHO05D003934 5.8e-07 58.2 95 34.7
Mapoly0150s0001 Marchantia polymorpha HOM05D000119 ORTHO05D000054 9.9e-07 57.4 95 36.8
Oeu012234.1 Olea europaea HOM05D001473 ORTHO05D003934 9.9e-07 57.4 103 34.0
Migut.F01545 Erythranthe guttata HOM05D001473 ORTHO05D003934 1.3e-06 57.0 94 35.1
PSO210G0556 Papaver somniferum HOM05D001473 ORTHO05D003934 1.3e-06 57.0 96 36.5
SMO196G0272 Selaginella moellendorffii HOM05D001473 ORTHO05D003934 2.2e-06 56.2 95 33.7
Lsat_1_v5_gn_5_132420 Lactuca sativa HOM05D001473 ORTHO05D003934 2.9e-06 55.8 95 33.7
Mapoly0330s0001 Marchantia polymorpha HOM05D000119 ORTHO05D000054 2.9e-06 55.8 95 35.8
CSS0002418 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 6.4e-06 54.7 90 32.2
CSS0020922 Camellia sinensis var. sinensis HOM05D001473 ORTHO05D003934 6.4e-06 54.7 90 32.2
Haze_26225 Corylus avellana HOM05D001473 ORTHO05D003934 8.4e-06 54.3 95 32.6


User provided reference genes

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