Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t33521H Brassica oleracea HOM05D003955 ORTHO05D004684 2.1e-199 698.7 333 100.0
C05p48110 Brassica napus HOM05D003955 ORTHO05D004684 1.9e-155 552.7 390 72.8
A05p31710 Brassica napus HOM05D003955 ORTHO05D004684 2.4e-155 552.4 394 72.3
BraA05t22004Z Brassica rapa HOM05D003955 ORTHO05D004684 2.4e-155 552.4 394 72.3
BolC5t33552H Brassica oleracea HOM05D003955 ORTHO05D004684 3.5e-154 548.5 394 71.8
Sp3g16180 Schrenkiella parvula HOM05D003955 ORTHO05D004684 8.1e-151 537.3 394 69.3
Thhalv10020321m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 2.4e-150 535.8 394 69.5
CARHR093380 Cardamine hirsuta HOM05D003955 ORTHO05D004684 6.9e-150 534.3 329 77.8
Carub.0003s1778 Capsella rubella HOM05D003955 ORTHO05D004684 4.9e-148 528.1 329 77.2
AT3G18060 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 2.4e-147 525.8 329 76.3
AL3G31220 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 4.2e-147 525.0 329 76.6
Aa31LG8G4920 Aethionema arabicum HOM05D003955 ORTHO05D004684 4.8e-143 511.5 390 66.7
TWI15G0606 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 2.1e-138 496.1 324 73.5
THA.LOC104820357 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 6.0e-138 494.6 322 73.6
TWI81G0555 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 7.9e-138 494.2 324 73.1
TAR622G0688 Trochodendron aralioides HOM05D003955 ORTHO05D004684 9.6e-136 487.3 324 72.2
MSTRG.9290 Avicennia marina HOM05D003955 ORTHO05D004684 8.1e-135 484.2 328 71.3
GSVIVG01008399001 Vitis vinifera HOM05D003955 ORTHO05D004684 3.0e-129 465.7 324 68.8
ClCG06G014440 Citrullus lanatus HOM05D003955 ORTHO05D004684 8.7e-129 464.2 324 69.4
Gohir.A11G004000 Gossypium hirsutum HOM05D003955 ORTHO05D004684 1.1e-128 463.8 324 69.8
Gohir.D11G003500 Gossypium hirsutum HOM05D003955 ORTHO05D004684 1.1e-128 463.8 324 69.4
Gorai.007G004500 Gossypium raimondii HOM05D003955 ORTHO05D004684 1.1e-128 463.8 324 69.4
Cpa.g.sc3.440 Carica papaya HOM05D003955 ORTHO05D004684 1.9e-128 463.0 324 70.4
Thecc.03G050300 Theobroma cacao HOM05D003955 ORTHO05D004684 3.3e-128 462.2 324 69.1
Rhsim12G0139700 Rhododendron simsii HOM05D003955 ORTHO05D004684 1.3e-127 460.3 325 69.5
vmacro16423 Vaccinium macrocarpon HOM05D003955 ORTHO05D004684 2.1e-127 459.5 325 68.6
Sed0001638 Sechium edule HOM05D003955 ORTHO05D004684 2.8e-127 459.1 324 69.1
Manes.06G008300 Manihot esculenta HOM05D003955 ORTHO05D004684 4.8e-127 458.4 331 68.6
Actinidia35113 Actinidia chinensis HOM05D003955 ORTHO05D004684 1.1e-126 457.2 324 69.1
Sed0014282 Sechium edule HOM05D003955 ORTHO05D004684 1.1e-126 457.2 324 68.5
COL.COLO4_20464 Corchorus olitorius HOM05D003955 ORTHO05D004684 2.4e-126 456.1 328 65.9
Aqoxy3G04013 Aquilegia oxysepala HOM05D003955 ORTHO05D004684 9.0e-126 454.1 331 66.2
CsaV3_1G004220 Cucumis sativus L. HOM05D003955 ORTHO05D004684 9.0e-126 454.1 324 68.8
CANSAT80G2537 Cannabis sativa HOM05D003955 ORTHO05D004684 3.4e-125 452.2 324 68.5
Cfa019689 Carpinus fangiana HOM05D003955 ORTHO05D004684 5.8e-125 451.4 324 67.6
MELO3C017347.2 Cucumis melo HOM05D003955 ORTHO05D004684 5.8e-125 451.4 324 68.2
Potri.012G049200 Populus trichocarpa HOM05D003955 ORTHO05D004684 5.8e-125 451.4 333 67.9
Haze_18797 Corylus avellana HOM05D003955 ORTHO05D004684 7.6e-125 451.1 322 67.7
Dinv26502 Davidia involucrata HOM05D003955 ORTHO05D004684 1.3e-124 450.3 324 67.0
Migut.D01456 Erythranthe guttata HOM05D003955 ORTHO05D004684 1.3e-124 450.3 331 66.8
Cc04_g06570 Coffea canephora HOM05D003955 ORTHO05D004684 3.8e-124 448.7 322 67.4
Gorai.002G180400 Gossypium raimondii HOM05D003955 ORTHO05D004684 3.8e-124 448.7 324 65.4
Hma1.2p1_0669F.1_g200270 Hydrangea macrophylla HOM05D003955 ORTHO05D004684 3.8e-124 448.7 325 66.8
Sabra12G0034600 Salix brachista HOM05D003955 ORTHO05D004684 3.8e-124 448.7 324 69.4
QL10p027883 Quercus lobata HOM05D003955 ORTHO05D004684 4.9e-124 448.4 324 67.6
RcHm_v2.0_Chr7g0178701 Rosa chinensis HOM05D003955 ORTHO05D004684 8.4e-124 447.6 324 68.2
Medtr1g107560 Medicago truncatula HOM05D003955 ORTHO05D004684 1.9e-123 446.4 324 66.0
Eucgr.K02263 Eucalyptus grandis HOM05D003955 ORTHO05D004684 2.5e-123 446.0 324 66.0
Prupe.5G230600 Prunus persica HOM05D003955 ORTHO05D004684 2.5e-123 446.0 324 68.2
Dinv05158 Davidia involucrata HOM05D003955 ORTHO05D004684 9.3e-123 444.1 324 65.7
Peaxi162Scf00683g00157 Petunia axillaris HOM05D003955 ORTHO05D004684 9.3e-123 444.1 324 67.0
TAR374G0009 Trochodendron aralioides HOM05D003955 ORTHO05D004684 9.3e-123 444.1 324 66.7
Sabra15G0063600 Salix brachista HOM05D003955 ORTHO05D004684 1.2e-122 443.7 324 69.1
Sabra15G0055900 Salix brachista HOM05D003955 ORTHO05D004684 2.7e-122 442.6 322 69.3
FAN18G0775 Fragaria x ananassa HOM05D003955 ORTHO05D004684 3.5e-122 442.2 324 67.0
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 4.6e-122 441.8 328 64.9
FAN04G3226 Fragaria x ananassa HOM05D003955 ORTHO05D004684 6.0e-122 441.4 323 66.9
MD14G1234400 Malus domestica HOM05D003955 ORTHO05D004684 6.0e-122 441.4 324 66.7
Potri.015G041200 Populus trichocarpa HOM05D003955 ORTHO05D004684 6.0e-122 441.4 322 68.6
MD06G1229500 Malus domestica HOM05D003955 ORTHO05D004684 1.3e-121 440.3 324 66.7
FvH4_5g17110 Fragaria vesca HOM05D003955 ORTHO05D004684 3.0e-121 439.1 324 66.7
Lalb_Chr05g0221841 Lupinus albus HOM05D003955 ORTHO05D004684 6.7e-121 438.0 327 66.1
FAN13G1787 Fragaria x ananassa HOM05D003955 ORTHO05D004684 8.7e-121 437.6 323 66.6
CiPaw.15G139700 Carya illinoinensis HOM05D003955 ORTHO05D004684 1.1e-120 437.2 324 65.4
FAN08G2535 Fragaria x ananassa HOM05D003955 ORTHO05D004684 1.1e-120 437.2 323 66.6
Ciclev10007782m.g Citrus clementina HOM05D003955 ORTHO05D004684 1.5e-120 436.8 335 66.3
COL.COLO4_22318 Corchorus olitorius HOM05D003955 ORTHO05D004684 1.9e-120 436.4 330 65.2
Nitab4.5_0001644g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 1.9e-120 436.4 347 62.8
PSO782G1387 Papaver somniferum HOM05D003955 ORTHO05D004684 3.3e-120 435.6 324 65.1
Solyc03g119090.3 Solanum lycopersicum HOM05D003955 ORTHO05D004684 4.3e-120 435.3 324 65.4
Sopen03g037980 Solanum pennellii HOM05D003955 ORTHO05D004684 4.3e-120 435.3 324 65.4
Nitab4.5_0001158g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 9.7e-120 434.1 336 63.7
SGA_v2.0_scaffold25G10972 Striga asiatica HOM05D003955 ORTHO05D004684 1.3e-119 433.7 324 66.7
PSO063G1948 Papaver somniferum HOM05D003955 ORTHO05D004684 1.6e-119 433.3 324 65.4
PGSC0003DMG400005655 Solanum tuberosum HOM05D003955 ORTHO05D004684 1.6e-119 433.3 324 65.7
VMungo0251G3447 Vigna mungo HOM05D003955 ORTHO05D004684 6.3e-119 431.4 324 63.9
Glyma.05G243900 Glycine max HOM05D003955 ORTHO05D004684 1.4e-118 430.3 324 63.6
CDE04G0774 Ceratophyllum demersum HOM05D003955 ORTHO05D004684 3.1e-118 429.1 328 64.6
Glyma.08G051900 Glycine max HOM05D003955 ORTHO05D004684 3.1e-118 429.1 324 63.6
HanXRQChr10g0314661 Helianthus annuus HOM05D003955 ORTHO05D004684 6.9e-118 427.9 387 56.8
AUR62014196 Chenopodium quinoa HOM05D003955 ORTHO05D004684 1.2e-117 427.2 324 63.3
Lj2A556T29 Lonicera japonica HOM05D003955 ORTHO05D004684 1.5e-117 426.8 390 57.2
Nn4g24112 Nelumbo nucifera HOM05D003955 ORTHO05D004684 1.5e-117 426.8 325 65.5
Lsat_1_v5_gn_5_91461 Lactuca sativa HOM05D003955 ORTHO05D004684 2.0e-117 426.4 325 64.9
Lj4g0027787 Lotus japonicus HOM05D003955 ORTHO05D004684 7.7e-117 424.5 327 63.3
Atru.chr11.420 Acer truncatum HOM05D003955 ORTHO05D004684 1.7e-116 423.3 324 63.3
ECA234G1883 Erigeron canadensis HOM05D003955 ORTHO05D004684 5.0e-116 421.8 324 63.0
Ca_17215_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 1.4e-115 420.2 327 63.6
Ca_17217_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 1.4e-115 420.2 327 63.6
arahy.Tifrunner.gnm1.ann1.I5E1T8 Arachis hypogaea HOM05D003955 ORTHO05D004684 1.9e-115 419.9 325 61.8
Phvul.002G327600 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 2.5e-115 419.5 324 62.7
Psat7g000120 Pisum sativum HOM05D003955 ORTHO05D004684 2.5e-115 419.5 327 63.0
PGR083G2578 Punica granatum HOM05D003955 ORTHO05D004684 3.2e-115 419.1 324 63.3
arahy.Tifrunner.gnm1.ann1.MW1RK6 Arachis hypogaea HOM05D003955 ORTHO05D004684 7.2e-115 417.9 325 61.5
Medtr8g106820 Medicago truncatula HOM05D003955 ORTHO05D004684 7.2e-115 417.9 327 63.3
DCAR_014770 Daucus carota HOM05D003955 ORTHO05D004684 2.7e-114 416.0 324 62.0
Oeu061232.2 Olea europaea HOM05D003955 ORTHO05D004684 3.6e-114 415.6 385 56.6
Gohir.A01G153300 Gossypium hirsutum HOM05D003955 ORTHO05D004684 1.4e-113 413.7 324 60.5
Actinidia18907 Actinidia chinensis HOM05D003955 ORTHO05D004684 1.8e-113 413.3 295 68.8
DCAR_023230 Daucus carota HOM05D003955 ORTHO05D004684 1.8e-113 413.3 331 61.6
Manes.15G126700 Manihot esculenta HOM05D003955 ORTHO05D004684 1.8e-113 413.3 324 60.5
Hund24990 Selenicereus undatus HOM05D003955 ORTHO05D004684 2.3e-113 412.9 396 54.3
Cpa.g.sc211.2 Carica papaya HOM05D003955 ORTHO05D004684 3.0e-113 412.5 396 55.6
Gohir.D01G099700 Gossypium hirsutum HOM05D003955 ORTHO05D004684 3.9e-113 412.1 324 60.5
ATR0686G116 Amborella trichopoda HOM05D003955 ORTHO05D004684 1.1e-112 410.6 326 62.0
CSS0005322 Camellia sinensis var. sinensis HOM05D003955 ORTHO05D004684 2.0e-112 409.8 330 62.4
Ciclev10014635m.g Citrus clementina HOM05D003955 ORTHO05D004684 2.0e-112 409.8 325 61.5
TPR.G13862 Trifolium pratense HOM05D003955 ORTHO05D004684 4.8e-111 405.2 324 59.9
Sc11g0004100 Simmondsia chinensis HOM05D003955 ORTHO05D004684 1.4e-110 403.7 327 61.8
Glyma.20G126400 Glycine max HOM05D003955 ORTHO05D004684 6.9e-110 401.4 325 58.8
Lj5g0018825 Lotus japonicus HOM05D003955 ORTHO05D004684 2.6e-109 399.4 325 60.9
Zm00001eb334960 Zea mays HOM05D003955 ORTHO05D004684 5.9e-109 398.3 325 58.5
VMungo0720G1874 Vigna mungo HOM05D003955 ORTHO05D004684 1.0e-108 397.5 325 58.8
AUR62041238 Chenopodium quinoa HOM05D003955 ORTHO05D004684 3.8e-108 395.6 327 59.6
Psat6g220280 Pisum sativum HOM05D003955 ORTHO05D004684 6.5e-108 394.8 324 59.0
Aa31LG2G8590 Aethionema arabicum HOM05D003955 ORTHO05D004684 8.5e-108 394.4 325 59.7
Carub.0005s0030 Capsella rubella HOM05D003955 ORTHO05D004684 3.2e-107 392.5 325 59.7
Os01g0125800 Oryza sativa ssp. japonica HOM05D003955 ORTHO05D004684 4.2e-107 392.1 325 57.2
Sp2g12780 Schrenkiella parvula HOM05D003955 ORTHO05D004684 1.6e-106 390.2 325 59.4
Zm00001eb125700 Zea mays HOM05D003955 ORTHO05D004684 2.7e-106 389.4 328 57.9
C09p30050 Brassica napus HOM05D003955 ORTHO05D004684 4.7e-106 388.7 330 58.8
BolC9t55869H Brassica oleracea HOM05D003955 ORTHO05D004684 4.7e-106 388.7 330 58.8
Thhalv10000821m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 3.0e-105 386.0 325 59.1
A09p23310 Brassica napus HOM05D003955 ORTHO05D004684 3.9e-105 385.6 330 58.2
Lj6A27G8 Lonicera japonica HOM05D003955 ORTHO05D004684 3.9e-105 385.6 408 51.0
AL5G10290 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 6.7e-105 384.8 325 59.1
EL10Ac6g14239 Beta vulgaris HOM05D003955 ORTHO05D004684 6.7e-105 384.8 327 57.5
BcaC04g21593 Brassica carinata HOM05D003955 ORTHO05D004684 6.7e-105 384.8 325 58.2
BraA09t37932Z Brassica rapa HOM05D003955 ORTHO05D004684 8.8e-105 384.4 330 57.9
Phvul.007G038100 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 1.1e-104 384.0 325 57.5
AT2G01330 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 8.2e-103 377.9 325 57.8
CARHR143850 Cardamine hirsuta HOM05D003955 ORTHO05D004684 1.8e-102 376.7 325 57.5
THA.LOC104823875 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 2.4e-102 376.3 332 56.9
BcaB07g30749 Brassica carinata HOM05D003955 ORTHO05D004684 4.1e-102 375.6 325 57.5
Mapoly0025s0096 Marchantia polymorpha HOM05D003955 ORTHO05D004684 3.9e-97 359.0 326 53.1
HPP92_000152 Vanilla planifolia HOM05D003955 ORTHO05D004684 3.5e-93 345.9 416 45.4
Ah.03g138590 Amaranthus hybridus HOM05D003955 ORTHO05D004684 5.0e-92 342.0 324 54.3
Hund20686 Selenicereus undatus HOM05D003955 ORTHO05D004684 4.1e-86 322.4 267 59.9
Pp3c3_9960 Physcomitrium patens HOM05D003955 ORTHO05D004684 5.9e-85 318.5 324 47.8
SMO298G0047 Selaginella moellendorffii HOM05D003955 ORTHO05D004684 1.5e-83 313.9 334 48.2
TPR.G12969 Trifolium pratense HOM05D003955 ORTHO05D004684 1.4e-78 297.4 257 59.1
AagrBONN_evm.TU.Sc2ySwM_340.157 Anthoceros agrestis HOM05D003955 ORTHO05D004684 6.1e-74 282.0 327 45.6
MCO02G121 Micromonas commoda HOM05D003955 ORTHO05D004684 3.1e-57 226.5 348 35.9
Lalb_Chr06g0165541 Lupinus albus HOM05D003955 ORTHO05D004684 4.0e-57 226.1 120 83.3
CBR_g51409 Chara braunii HOM05D003955 ORTHO05D004684 2.9e-55 219.9 264 42.4
Thecc.02G279800 Theobroma cacao HOM05D003955 ORTHO05D004684 4.1e-54 216.1 209 52.6
Haze_27019 Corylus avellana HOM05D003955 ORTHO05D004684 1.5e-51 207.6 330 34.8
Oeu031790.1 Olea europaea HOM05D003955 ORTHO05D004684 1.4e-49 201.1 146 63.7
Zm00001eb337090 Zea mays HOM05D003955 ORTHO05D004684 6.4e-47 192.2 167 56.3
Zm00001eb396840 Zea mays HOM05D003955 ORTHO05D004684 8.3e-47 191.8 167 56.3
Zm00001eb287030 Zea mays HOM05D003955 ORTHO05D004684 7.8e-45 185.3 165 55.8
PRCOL_00004882 Prasinoderma coloniale HOM05D003955 ORTHO05D004684 1.7e-44 184.1 303 37.3
Zm00001eb076360 Zea mays HOM05D003955 ORTHO05D004684 5.1e-44 182.6 165 55.2
Atru.chr9.1764 Acer truncatum HOM05D003955 ORTHO05D004684 9.6e-43 178.3 172 55.8
Lalb_Chr06g0165551 Lupinus albus HOM05D003955 ORTHO05D004684 2.1e-42 177.2 207 45.9
SEGI_26510 Sequoiadendron giganteum HOM05D003955 ORTHO05D004684 4.6e-37 159.5 144 53.5
BcaC05g28709 Brassica carinata HOM05D003955 ORTHO05D004684 1.9e-30 137.5 130 60.0
RcHm_v2.0_Chr5g0062751 Rosa chinensis HOM05D003955 ORTHO05D004684 2.4e-25 120.6 101 58.4
Ca_27465_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 5.3e-25 119.4 65 83.1
Zm00001eb221950 Zea mays HOM05D003955 ORTHO05D004684 3.4e-24 116.7 95 58.9
Oeu031786.1 Olea europaea HOM05D003955 ORTHO05D004684 4.9e-23 112.8 127 50.4
TPR.G12747 Trifolium pratense HOM05D003955 ORTHO05D004684 4.9e-23 112.8 66 75.8
Hund20688 Selenicereus undatus HOM05D003955 ORTHO05D004684 7.1e-22 109.0 65 76.9
Zm00001eb369430 Zea mays HOM05D003955 ORTHO05D004684 1.4e-17 94.7 54 77.8
Atru.chr9.1765 Acer truncatum HOM05D003955 ORTHO05D004684 2.7e-13 80.5 62 61.3
RcHm_v2.0_Chr6g0266701 Rosa chinensis HOM05D003955 ORTHO05D004684 3.3e-11 73.6 39 79.5
RcHm_v2.0_Chr6g0295791 Rosa chinensis HOM05D003955 ORTHO05D004684 1.6e-10 71.2 39 76.9
BolC8t47355H Brassica oleracea HOM05D004768 ORTHO05D005812 2.0e-08 64.3 278 21.9


User provided reference genes

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