Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 3011.1 1498 100.0
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 2974.1 1527 97.4
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 2971.8 1498 99.0
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 2930.6 1504 97.8
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 2927.9 1531 96.3
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 2727.2 1502 91.3
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 2668.6 1508 88.7
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 2540.4 1512 84.9
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 2528.4 1514 84.3
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 2520.0 1513 84.1
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 2491.5 1509 83.2
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 2257.3 1513 76.2
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 2174.1 1284 84.8
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 2091.2 1512 71.2
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 1515.7 1521 53.1
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1493.4 1527 52.9
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1489.6 1515 53.3
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1489.2 1513 53.1
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1475.3 1520 51.7
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1473.8 1516 52.8
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1470.3 1515 52.1
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1461.4 1504 51.7
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 1456.8 1522 51.3
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1439.1 1546 50.1
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1435.2 1550 51.4
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1430.2 1508 51.7
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1421.4 1036 73.7
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 1419.8 1520 50.9
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1419.4 1037 74.0
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1419.4 1039 73.4
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1419.1 1524 51.2
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1416.7 1469 50.9
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1412.1 1630 48.6
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1410.6 1445 52.9
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1396.7 1467 51.6
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1390.9 1519 49.8
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1387.9 1543 48.7
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1383.6 1513 49.4
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1382.9 1518 49.5
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1372.1 1519 48.9
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1366.3 1504 49.9
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1362.8 1527 49.6
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1362.1 1294 54.8
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1349.0 1521 49.6
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1340.5 1512 48.1
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1337.4 1512 47.9
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1336.6 1508 47.6
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1331.2 1509 47.6
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1329.7 1511 48.4
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1329.3 1516 48.7
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1325.8 1519 48.1
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1324.3 1536 47.1
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1320.4 1505 47.5
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1314.7 1506 46.9
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1312.0 1504 47.3
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1309.3 1506 46.7
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1308.9 1517 48.5
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1308.1 1526 46.8
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1308.1 1526 46.8
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1305.0 1518 47.6
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1304.7 1508 47.1
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1303.1 1509 48.0
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1302.7 1511 47.5
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1300.4 1504 47.2
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1299.6 1527 47.5
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1293.9 1507 47.4
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1288.9 1506 47.5
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1283.5 1526 46.9
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1280.0 1505 46.8
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1279.6 1241 54.3
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1274.2 1521 46.2
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1267.3 1514 46.0
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1260.7 1502 45.9
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1260.4 1525 45.9
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1251.9 1530 45.4
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1247.3 1212 54.7
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1243.8 1541 44.4
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1234.6 1532 45.8
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1230.3 1507 45.5
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1213.0 1463 46.3
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1176.8 1504 43.6
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1117.8 1513 43.2
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1115.1 1516 41.6
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1115.1 1396 45.1
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1112.8 1762 37.9
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1109.0 1560 42.2
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1106.7 1542 41.9
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1100.9 1563 41.5
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1094.0 1103 51.0
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1091.6 1168 51.4
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 1.8e-303 1046.6 1513 41.3
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 6.8e-298 1028.1 1138 49.0
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 3.4e-297 1025.8 1055 52.0
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 2.2e-288 996.5 1128 48.7
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 4.3e-284 982.2 980 51.5
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.1e-234 818.1 1149 41.7
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 1.0e-216 758.4 500 78.6
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 1.1e-215 755.0 1535 33.9
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 2.8e-211 740.3 1534 32.9
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 2.1e-206 724.2 1547 32.8
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.3e-203 714.9 1143 36.5
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 2.3e-197 694.1 1018 41.7
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 9.8e-196 688.7 451 78.9
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 6.1e-190 669.5 598 57.4
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 1.6e-185 654.8 581 57.1
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 3.4e-180 637.1 1409 31.6
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.1e-175 622.1 972 36.6
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 1.8e-165 588.2 580 53.1
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 2.8e-158 564.3 643 48.5
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 1.2e-153 548.9 392 75.0
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 2.1e-153 548.1 601 48.8
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 5.4e-146 523.5 596 48.3
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.6e-132 478.0 579 47.2
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 4.6e-121 440.7 493 50.7
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 3.0e-120 438.0 525 47.6
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.2e-116 426.0 606 41.1
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 1.9e-114 418.7 569 42.7
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-101 376.3 998 28.3
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 3.3e-82 311.6 358 48.0
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 4.0e-80 304.7 300 52.3
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.4e-77 295.4 328 46.3
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 1.9e-61 242.7 451 38.1
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 4.3e-58 231.5 212 55.2
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 8.1e-57 227.3 360 38.6
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 4.0e-56 224.9 373 34.6
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.3e-54 219.9 538 31.6
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.4e-53 215.7 294 41.5
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 1.3e-51 209.9 121 87.6
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 1.1e-50 206.8 278 45.0
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 1.5e-50 206.5 204 52.0
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.8e-48 199.5 336 37.5
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 4.4e-47 194.9 408 36.8
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 7.1e-45 187.6 300 38.3
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 3.5e-44 185.3 264 41.3
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 7.8e-44 184.1 467 29.8
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 1.3e-43 183.3 796 24.7
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 1.3e-38 166.8 381 33.9
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 3.8e-38 165.2 124 63.7
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 3.8e-38 165.2 287 35.2
BcaB06g28204 Brassica carinata HOM05D001082 ORTHO05D005120 2.4e-37 162.5 153 59.5
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 3.5e-36 158.7 131 58.8
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 3.5e-36 158.7 210 43.3
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.3e-34 152.1 310 31.3
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 9.0e-32 144.1 247 38.1
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 2.2e-30 139.4 120 54.2
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 4.9e-30 138.3 181 42.5
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 1.1e-26 127.1 196 39.8
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 2.5e-26 125.9 67 86.6
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 7.4e-26 124.4 182 42.3
BcaC02g08127 Brassica carinata HOM05D001082 ORTHO05D005120 1.1e-24 120.6 113 59.3
BolC4t27334H Brassica oleracea HOM05D001082 ORTHO05D005120 1.4e-24 120.2 113 59.3
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 4.0e-24 118.6 186 38.2
A08p08590 Brassica napus HOM05D001082 ORTHO05D005120 3.4e-23 115.5 70 80.0
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 3.4e-23 115.5 120 51.7
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 1.3e-22 113.6 180 41.1
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 2.9e-22 112.5 122 44.3
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 6.5e-22 111.3 151 41.1
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 2.8e-17 95.9 252 29.0
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 4.2e-13 82.0 277 25.3
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 9.3e-13 80.9 102 43.1
BolC8t47897H Brassica oleracea HOM05D001082 ORTHO05D005120 1.6e-12 80.1 48 83.3
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 4.6e-12 78.6 95 46.3
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 2.3e-11 76.3 95 45.3
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 9.7e-10 70.9 193 30.6
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 5.9e-07 61.6 37 75.7
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 8.5e-06 57.8 67 44.8


User provided reference genes

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