Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t32201H Brassica oleracea HOM05D000565 ORTHO05D027136 3.7e-91 338.2 171 100.0
C05p34720 Brassica napus HOM05D000565 ORTHO05D027136 5.8e-60 234.6 121 98.3
C05p15260 Brassica napus HOM05D000565 ORTHO05D027136 3.9e-56 221.9 121 93.4
BcaC05g27505 Brassica carinata HOM05D000565 ORTHO05D027136 7.6e-36 154.5 120 71.7
BraA09t39119Z Brassica rapa HOM05D000565 ORTHO05D005648 2.2e-35 152.9 204 46.6
C03p71450 Brassica napus HOM05D000565 ORTHO05D005648 7.9e-25 117.9 76 77.6
C05p29510 Brassica napus HOM05D000565 ORTHO05D005648 7.4e-23 111.3 218 39.0
BolC5t31681H Brassica oleracea HOM05D000565 ORTHO05D005648 7.4e-23 111.3 218 39.0
A09p35950 Brassica napus HOM05D000565 ORTHO05D005648 6.2e-22 108.2 218 38.5
BcaB07g32686 Brassica carinata HOM05D000565 ORTHO05D005648 3.1e-21 105.9 206 38.3
CARHR029920 Cardamine hirsuta HOM05D000565 ORTHO05D005648 7.6e-20 101.3 218 36.2
Thhalv10007919m.g Eutrema salsugineum HOM05D000565 ORTHO05D005648 1.7e-19 100.1 218 36.2
AL1G44540 Arabidopsis lyrata HOM05D000565 ORTHO05D005648 6.5e-19 98.2 218 36.2
Sp1g26350 Schrenkiella parvula HOM05D000565 ORTHO05D005648 6.5e-19 98.2 218 36.2
AT1G30510 Arabidopsis thaliana HOM05D000565 ORTHO05D005648 1.1e-18 97.4 218 35.8
BcaB07g32662 Brassica carinata HOM05D000565 ORTHO05D005648 1.4e-18 97.1 218 36.2
Sc02g0003350 Simmondsia chinensis HOM05D000565 ORTHO05D005648 3.2e-18 95.9 70 62.9
Lalb_Chr15g0088761 Lupinus albus HOM05D000565 ORTHO05D005648 7.1e-18 94.7 74 60.8
Medtr2g030200 Medicago truncatula HOM05D000565 ORTHO05D005648 7.1e-18 94.7 70 62.9
Ca_00841_v3 Cicer arietinum L. HOM05D000565 ORTHO05D005648 9.3e-18 94.4 70 62.9
Glyma.09G024100 Glycine max HOM05D000565 ORTHO05D005648 9.3e-18 94.4 70 62.9
Glyma.15G130100 Glycine max HOM05D000565 ORTHO05D005648 9.3e-18 94.4 70 62.9
Lalb_Chr18g0057971 Lupinus albus HOM05D000565 ORTHO05D005648 9.3e-18 94.4 70 62.9
Phvul.006G128400 Phaseolus vulgaris HOM05D000565 ORTHO05D005648 9.3e-18 94.4 70 62.9
TPR.G26366 Trifolium pratense HOM05D000565 ORTHO05D005648 1.6e-17 93.6 70 61.4
Oeu040081.1 Olea europaea HOM05D000565 ORTHO05D005648 3.5e-17 92.4 70 60.0
Actinidia13487 Actinidia chinensis HOM05D000565 ORTHO05D005648 4.6e-17 92.0 70 60.0
MSTRG.13270 Avicennia marina HOM05D000565 ORTHO05D005648 4.6e-17 92.0 48 85.4
CSS0013697 Camellia sinensis var. sinensis HOM05D000565 ORTHO05D005648 4.6e-17 92.0 70 61.4
RcHm_v2.0_Chr5g0016001 Rosa chinensis HOM05D000565 ORTHO05D005648 4.6e-17 92.0 48 85.4
Cpa.g.sc166.32 Carica papaya HOM05D000565 ORTHO05D005648 6.0e-17 91.7 70 60.0
AT4G05390 Arabidopsis thaliana HOM05D000565 ORTHO05D005648 7.9e-17 91.3 70 60.0
Carub.0001s2873 Capsella rubella HOM05D000565 ORTHO05D005648 7.9e-17 91.3 70 61.4
CiPaw.10G085500 Carya illinoinensis HOM05D000565 ORTHO05D005648 7.9e-17 91.3 70 60.0
ECA233G6104 Erigeron canadensis HOM05D000565 ORTHO05D005648 7.9e-17 91.3 70 61.4
HanXRQChr14g0433721 Helianthus annuus HOM05D000565 ORTHO05D005648 7.9e-17 91.3 70 61.4
Lsat_1_v5_gn_5_67180 Lactuca sativa HOM05D000565 ORTHO05D005648 7.9e-17 91.3 70 61.4
Potri.001G371900 Populus trichocarpa HOM05D000565 ORTHO05D005648 7.9e-17 91.3 70 61.4
TWI73G0030 Tripterygium wilfordii HOM05D000565 ORTHO05D005648 7.9e-17 91.3 70 61.4
HPP92_017534 Vanilla planifolia HOM05D000565 ORTHO05D005648 7.9e-17 91.3 70 61.4
VMungo0540G0579 Vigna mungo HOM05D000565 ORTHO05D005648 7.9e-17 91.3 70 61.4
Aa31LG6G11750 Aethionema arabicum HOM05D000565 ORTHO05D005648 1.0e-16 90.9 219 34.2
Ah.05g177320 Amaranthus hybridus HOM05D000565 ORTHO05D005648 1.0e-16 90.9 70 58.6
CAN.G79.37 Capsicum annuum HOM05D000565 ORTHO05D005648 1.3e-16 90.5 48 85.4
CARHR252190 Cardamine hirsuta HOM05D000565 ORTHO05D005648 1.3e-16 90.5 70 60.0
Thhalv10028734m.g Eutrema salsugineum HOM05D000565 ORTHO05D005648 1.3e-16 90.5 70 60.0
Peaxi162Scf00267g00021 Petunia axillaris HOM05D000565 ORTHO05D005648 1.3e-16 90.5 48 85.4
Sp6g03700 Schrenkiella parvula HOM05D000565 ORTHO05D005648 1.3e-16 90.5 70 60.0
Solyc02g024050.3 Solanum lycopersicum HOM05D000565 ORTHO05D005648 1.3e-16 90.5 48 85.4
Sopen02g006780 Solanum pennellii HOM05D000565 ORTHO05D005648 1.3e-16 90.5 48 85.4
PGSC0003DMG400004095 Solanum tuberosum HOM05D000565 ORTHO05D005648 1.3e-16 90.5 48 85.4
PGSC0003DMG400011811 Solanum tuberosum HOM05D000565 ORTHO05D005648 1.3e-16 90.5 48 85.4
Aqoxy4G00009 Aquilegia oxysepala HOM05D000565 ORTHO05D005648 1.8e-16 90.1 70 60.0
BcaB01g01901 Brassica carinata HOM05D000565 ORTHO05D005648 1.8e-16 90.1 83 55.4
COL.COLO4_26833 Corchorus olitorius HOM05D000565 ORTHO05D005648 1.8e-16 90.1 70 60.0
MELO3C007076.2 Cucumis melo HOM05D000565 ORTHO05D005648 1.8e-16 90.1 70 60.0
Dinv10130 Davidia involucrata HOM05D000565 ORTHO05D005648 1.8e-16 90.1 44 90.9
Migut.H01330 Erythranthe guttata HOM05D000565 ORTHO05D005648 1.8e-16 90.1 70 60.0
MD05G1273100 Malus domestica HOM05D000565 ORTHO05D005648 1.8e-16 90.1 70 58.6
Nitab4.5_0005178g0010 Nicotiana tabacum HOM05D000565 ORTHO05D005648 1.8e-16 90.1 70 60.0
PSO210G4909 Papaver somniferum HOM05D000565 ORTHO05D005648 1.8e-16 90.1 70 60.0
PSO210G5242 Papaver somniferum HOM05D000565 ORTHO05D005648 1.8e-16 90.1 70 60.0
Sed0025084 Sechium edule HOM05D000565 ORTHO05D005648 1.8e-16 90.1 70 60.0
Thecc.06G001800 Theobroma cacao HOM05D000565 ORTHO05D005648 1.8e-16 90.1 70 60.0
vmacro03389 Vaccinium macrocarpon HOM05D000565 ORTHO05D005648 1.8e-16 90.1 70 60.0
vmacro03446 Vaccinium macrocarpon HOM05D000565 ORTHO05D005648 1.8e-16 90.1 70 60.0
Carub.0006s3330 Capsella rubella HOM05D000565 ORTHO05D005648 2.3e-16 89.7 70 58.6
ECA238G4061 Erigeron canadensis HOM05D000565 ORTHO05D005648 2.3e-16 89.7 70 60.0
Migut.M01895 Erythranthe guttata HOM05D000565 ORTHO05D005648 2.3e-16 89.7 70 60.0
Rhsim13G0120600 Rhododendron simsii HOM05D000565 ORTHO05D005648 2.3e-16 89.7 70 60.0
Hund17159 Selenicereus undatus HOM05D000565 ORTHO05D005648 2.3e-16 89.7 70 57.1
CANSAT35G0187 Cannabis sativa HOM05D000565 ORTHO05D005648 3.0e-16 89.4 70 60.0
Lj6g0026288 Lotus japonicus HOM05D000565 ORTHO05D005648 3.0e-16 89.4 70 58.6
SalBow4G0957 Salvia bowleyana HOM05D000565 ORTHO05D005648 3.0e-16 89.4 48 85.4
SalBow7G0308 Salvia bowleyana HOM05D000565 ORTHO05D005648 3.0e-16 89.4 48 85.4
THA.LOC104806255 Tarenaya hassleriana HOM05D000565 ORTHO05D005648 3.0e-16 89.4 70 60.0
GSVIVG01021650001 Vitis vinifera HOM05D000565 ORTHO05D005648 3.0e-16 89.4 48 83.3
A09p25440 Brassica napus HOM05D000565 ORTHO05D005648 3.9e-16 89.0 70 60.0
C09p32370 Brassica napus HOM05D000565 ORTHO05D005648 3.9e-16 89.0 70 60.0
BolC9t56082H Brassica oleracea HOM05D000565 ORTHO05D005648 3.9e-16 89.0 70 60.0
BraA09t38119Z Brassica rapa HOM05D000565 ORTHO05D005648 3.9e-16 89.0 70 60.0
ClCG01G011190 Citrullus lanatus HOM05D000565 ORTHO05D005648 3.9e-16 89.0 48 83.3
FvH4_3g10090 Fragaria vesca HOM05D000565 ORTHO05D005648 3.9e-16 89.0 70 58.6
FAN11G3844 Fragaria x ananassa HOM05D000565 ORTHO05D005648 3.9e-16 89.0 70 58.6
FAN21G1689 Fragaria x ananassa HOM05D000565 ORTHO05D005648 3.9e-16 89.0 70 58.6
FAN25G3384 Fragaria x ananassa HOM05D000565 ORTHO05D005648 3.9e-16 89.0 70 58.6
Lj1A1162T43 Lonicera japonica HOM05D000565 ORTHO05D005648 3.9e-16 89.0 70 60.0
Nitab4.5_0000574g0120 Nicotiana tabacum HOM05D000565 ORTHO05D005648 3.9e-16 89.0 70 60.0
Sed0012492 Sechium edule HOM05D000565 ORTHO05D005648 3.9e-16 89.0 70 60.0
unitig_0.g925 Utricularia gibba HOM05D000565 ORTHO05D005648 3.9e-16 89.0 70 58.6
arahy.Tifrunner.gnm1.ann1.26BATJ Arachis hypogaea HOM05D000565 ORTHO05D005648 5.1e-16 88.6 70 58.6
arahy.Tifrunner.gnm1.ann1.PVE8MA Arachis hypogaea HOM05D000565 ORTHO05D005648 5.1e-16 88.6 70 58.6
AUR62023326 Chenopodium quinoa HOM05D000565 ORTHO05D005648 5.1e-16 88.6 70 58.6
AUR62038006 Chenopodium quinoa HOM05D000565 ORTHO05D005648 5.1e-16 88.6 70 58.6
FAN16G1019 Fragaria x ananassa HOM05D000565 ORTHO05D005648 5.1e-16 88.6 80 56.2
MD10G1253200 Malus domestica HOM05D000565 ORTHO05D005648 5.1e-16 88.6 70 58.6
Manes.06G054800 Manihot esculenta HOM05D000565 ORTHO05D005648 5.1e-16 88.6 70 58.6
Os03g0784700 Oryza sativa ssp. japonica HOM05D000565 ORTHO05D005648 5.1e-16 88.6 70 58.6
QL05p061864 Quercus lobata HOM05D000565 ORTHO05D005648 5.1e-16 88.6 70 58.6
ATR0582G230 Amborella trichopoda HOM05D000565 ORTHO05D005648 6.7e-16 88.2 70 58.6
Lj6g0023715 Lotus japonicus HOM05D000565 ORTHO05D005648 6.7e-16 88.2 70 58.6
AagrBONN_evm.TU.Sc2ySwM_344.5060 Anthoceros agrestis HOM05D000565 ORTHO05D005648 8.7e-16 87.8 70 60.0
Hund26927 Selenicereus undatus HOM05D000565 ORTHO05D005648 8.7e-16 87.8 70 58.6
Aa31LG9G9190 Aethionema arabicum HOM05D000565 ORTHO05D005648 1.1e-15 87.4 70 58.6
Duzib235G0215 Durio zibethinus HOM05D000565 ORTHO05D005648 1.1e-15 87.4 70 58.6
Psat1g167560 Pisum sativum HOM05D000565 ORTHO05D005648 1.1e-15 87.4 70 58.6
PGR042G3149 Punica granatum HOM05D000565 ORTHO05D005648 1.1e-15 87.4 89 49.4
Atru.chr10.849 Acer truncatum HOM05D000565 ORTHO05D005648 1.5e-15 87.0 90 48.9
CDE02G1171 Ceratophyllum demersum HOM05D000565 ORTHO05D005648 1.5e-15 87.0 48 81.2
Haze_05821 Corylus avellana HOM05D000565 ORTHO05D005648 1.5e-15 87.0 70 57.1
CsaV3_6G052330 Cucumis sativus L. HOM05D000565 ORTHO05D005648 1.5e-15 87.0 70 58.6
Dinv10795 Davidia involucrata HOM05D000565 ORTHO05D005648 1.5e-15 87.0 70 57.1
Manes.14G123200 Manihot esculenta HOM05D000565 ORTHO05D005648 1.5e-15 87.0 70 57.1
Prupe.4G090300 Prunus persica HOM05D000565 ORTHO05D005648 1.5e-15 87.0 70 57.1
Sabra16G0244400 Salix brachista HOM05D000565 ORTHO05D005648 1.5e-15 87.0 89 49.4
Eucgr.D00177 Eucalyptus grandis HOM05D000565 ORTHO05D005648 1.9e-15 86.7 89 49.4
Nn3g20190 Nelumbo nucifera HOM05D000565 ORTHO05D005648 1.9e-15 86.7 70 57.1
SEGI_23403 Sequoiadendron giganteum HOM05D000565 ORTHO05D005648 1.9e-15 86.7 70 58.6
TAR627G1094 Trochodendron aralioides HOM05D000565 ORTHO05D005648 1.9e-15 86.7 179 33.5
CDE05G3408 Ceratophyllum demersum HOM05D000565 ORTHO05D005648 3.3e-15 85.9 89 48.3
Ciclev10015627m.g Citrus clementina HOM05D000565 ORTHO05D005648 3.3e-15 85.9 70 57.1
Duzib192G0112 Durio zibethinus HOM05D000565 ORTHO05D005648 3.3e-15 85.9 70 57.1
THA.LOC104812425 Tarenaya hassleriana HOM05D000565 ORTHO05D005648 3.3e-15 85.9 70 58.6
MBI02_g20987_MAGBIO Magnolia biondii HOM05D000565 ORTHO05D005648 4.3e-15 85.5 70 57.1
Sopen07g006870 Solanum pennellii HOM05D000565 ORTHO05D005648 4.3e-15 85.5 48 79.2
DCAR_003854 Daucus carota HOM05D000565 ORTHO05D005648 5.7e-15 85.1 44 88.6
Gohir.D05G110800 Gossypium hirsutum HOM05D000565 ORTHO05D005648 5.7e-15 85.1 70 55.7
Gorai.009G115100 Gossypium raimondii HOM05D000565 ORTHO05D005648 5.7e-15 85.1 70 55.7
Os07g0147900 Oryza sativa ssp. japonica HOM05D000565 ORTHO05D005648 5.7e-15 85.1 70 57.1
Zm00001eb059850 Zea mays HOM05D000565 ORTHO05D005648 5.7e-15 85.1 70 57.1
AagrBONN_evm.TU.Sc2ySwM_228.2898 Anthoceros agrestis HOM05D000565 ORTHO05D005648 7.4e-15 84.7 90 46.7
EL10Ac1g00678 Beta vulgaris HOM05D000565 ORTHO05D005648 7.4e-15 84.7 70 55.7
Cc09_g08000 Coffea canephora HOM05D000565 ORTHO05D005648 7.4e-15 84.7 70 55.7
PGR083G1387 Punica granatum HOM05D000565 ORTHO05D005648 7.4e-15 84.7 89 48.3
arahy.Tifrunner.gnm1.ann1.Q7I94B Arachis hypogaea HOM05D000565 ORTHO05D005648 9.6e-15 84.3 70 57.1
Cfa000819 Carpinus fangiana HOM05D000565 ORTHO05D005648 1.3e-14 84.0 70 55.7
Gohir.A05G110400 Gossypium hirsutum HOM05D000565 ORTHO05D005648 1.3e-14 84.0 70 55.7
Zm00001eb299960 Zea mays HOM05D000565 ORTHO05D005648 1.6e-14 83.6 70 55.7
SMO236G0085 Selaginella moellendorffii HOM05D000565 ORTHO05D005648 3.7e-14 82.4 83 50.6
CBR_g19271 Chara braunii HOM05D000565 ORTHO05D005648 4.8e-14 82.0 48 77.1
Mapoly0163s0011 Marchantia polymorpha HOM05D000565 ORTHO05D005648 1.8e-13 80.1 70 54.3
Pp3c19_9770 Physcomitrium patens HOM05D000565 ORTHO05D005648 2.4e-13 79.7 70 52.9
Oeu060306.1 Olea europaea HOM05D000565 ORTHO05D005648 3.1e-13 79.3 63 58.7
SHI20699 Sapria himalayana HOM05D000565 ORTHO05D005648 5.8e-12 75.1 52 65.4
PRCOL_00002039 Prasinoderma coloniale HOM05D000565 ORTHO05D005648 1.7e-11 73.6 48 68.8
Cre11.g476750 Chlamydomonas reinhardtii HOM05D000565 ORTHO05D005648 2.9e-11 72.8 40 82.5
PRCOL_00002643 Prasinoderma coloniale HOM05D000565 ORTHO05D005648 3.8e-11 72.4 89 41.6
Pp3c9_25700 Physcomitrium patens HOM05D000565 ORTHO05D005648 8.4e-11 71.2 48 70.8
Pp3c9_25950 Physcomitrium patens HOM05D000565 ORTHO05D005648 8.4e-11 71.2 48 70.8
SMO143G0286 Selaginella moellendorffii HOM05D000565 ORTHO05D005648 1.2e-09 67.4 74 43.2
SGA_v2.0_scaffold106G30669 Striga asiatica HOM05D000565 ORTHO05D005648 3.5e-09 65.9 32 87.5
MCO09G277 Micromonas commoda HOM05D000565 ORTHO05D005648 1.3e-08 63.9 72 51.4
Actinidia20093 Actinidia chinensis HOM05D000565 ORTHO05D005648 1.1e-07 60.8 56 57.1
SMO169G0208 Selaginella moellendorffii HOM05D000565 ORTHO05D005648 9.7e-07 57.8 72 40.3


User provided reference genes

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