Gene: AT4G05390

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G05390
  • Transcript Identifier AT4G05390.1
  • Gene Type Coding gene
  • Location Chr4 : 2738839-2740483 : negative

Gene Family Information

  • ID HOM05D000565
  • #Genes/#Species 980/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G05390.1
  • symbol RFNR1
  • Alias ATRFNR1,root FNR 1
  • uniprot Q9M0V6

Descriptions

  • Description root FNR 1
  • Computational description root FNR 1 (RFNR1); FUNCTIONS IN: oxidoreductase activity, copper ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast, thylakoid membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin reductase-type FAD-binding domain (InterPro:IPR017927), Oxidoreductase, FAD-binding domain (InterPro:IPR008333), Ferredoxin--NADP reductase (InterPro:IPR012146), Oxidoreductase FAD/NAD(P)-binding (InterPro:IPR001433), Riboflavin synthase-like beta-barrel (InterPro:IPR017938), Ferredoxin Reductase (InterPro:IPR015701), Flavoprotein pyridine nucleotide cytochrome reductase (InterPro:IPR001709); BEST Arabidopsis thaliana protein match is: root FNR 2 (TAIR:AT1G30510.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0022900
ISO
PLAZA Integrative Orthologyelectron transport chain Zm00001eb059850
GO:0007166
ISO
PLAZA Homology (enrichment)cell surface receptor signaling pathway HOM05D000565
GO:0015979
IEA
GOA Databasephotosynthesis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016491
IEA
GOA Databaseoxidoreductase activity
GO:0016491
IEA
InterProoxidoreductase activity
GO:0016653
ISO
PLAZA Integrative Orthologyoxidoreductase activity, acting on NAD(P)H, heme protein as acceptor Zm00001eb059850
GO:0070402
ISO
PLAZA Integrative OrthologyNADPH binding Zm00001eb059850
GO:0003959
ISO
PLAZA Integrative OrthologyNADPH dehydrogenase activity Zm00001eb059850
GO:0009055
ISO
PLAZA Integrative Orthologyelectron transfer activity Zm00001eb059850
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding Zm00001eb059850
GO:0003954
ISO
PLAZA Integrative OrthologyNADH dehydrogenase activity Zm00001eb059850
GO:0004324
IEA
Gene Ontologyferredoxin-NADP+ reductase activity
GO:0005507
IDA
GOA Databasecopper ion binding
GO:0005507
HDA
Gene Ontologycopper ion binding1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009536
IEA
GOA Databaseplastid
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
HDA
ISM
Gene Ontologychloroplast2

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035442 Ferredoxin--NADP reductase, plant and Cyanobacteria type
IPR001433 Oxidoreductase FAD/NAD(P)-binding
IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain
IPR015701 Ferredoxin--NADP reductase
IPR017938 Riboflavin synthase-like beta-barrel
IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase
Mapman id Description
50.1.17 Enzyme classification.EC_1 oxidoreductases.EC_1.18 oxidoreductase acting on iron-sulfur protein as donor