Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t32097H Brassica oleracea HOM05D002279 ORTHO05D027816 1.6e-98 362.8 193 100.0
C05p33660 Brassica napus HOM05D002279 ORTHO05D027816 1.4e-83 313.2 169 98.2
C05p02340 Brassica napus HOM05D002279 ORTHO05D002644 1.3e-36 157.1 118 71.2
BolC5t29013H Brassica oleracea HOM05D002279 ORTHO05D002644 3.3e-35 152.5 118 70.3
A10p02540 Brassica napus HOM05D002279 ORTHO05D002644 5.5e-35 151.8 115 71.3
BraA10t42523Z Brassica rapa HOM05D002279 ORTHO05D002644 1.2e-34 150.6 117 70.1
BcaC05g24473 Brassica carinata HOM05D002279 ORTHO05D002644 8.0e-34 147.9 118 68.6
Sp1g02900 Schrenkiella parvula HOM05D002279 ORTHO05D002644 1.3e-31 140.6 120 65.8
Thhalv10006844m.g Eutrema salsugineum HOM05D002279 ORTHO05D002644 2.2e-31 139.8 128 62.5
CARHR003420 Cardamine hirsuta HOM05D002279 ORTHO05D002644 1.2e-29 134.0 128 60.9
AT1G04080 Arabidopsis thaliana HOM05D002279 ORTHO05D002644 1.1e-27 127.5 128 59.4
Carub.0001s0323 Capsella rubella HOM05D002279 ORTHO05D002644 1.9e-27 126.7 128 59.4
THA.LOC104826051 Tarenaya hassleriana HOM05D002279 ORTHO05D002644 9.5e-27 124.4 114 59.6
AL1G13680 Arabidopsis lyrata HOM05D002279 ORTHO05D002644 2.3e-25 119.8 128 56.2
BolC8t46891H Brassica oleracea HOM05D002279 ORTHO05D002644 1.2e-24 117.5 142 54.9
THA.LOC104816099 Tarenaya hassleriana HOM05D002279 ORTHO05D002644 3.4e-24 115.9 127 55.1
C08p00900 Brassica napus HOM05D002279 ORTHO05D002644 7.5e-24 114.8 129 54.3
Aa31LG1G20760 Aethionema arabicum HOM05D002279 ORTHO05D002644 2.2e-23 113.2 124 56.5
BraA08t35610Z Brassica rapa HOM05D002279 ORTHO05D002644 2.9e-23 112.8 129 53.5
A08p37110 Brassica napus HOM05D002279 ORTHO05D002644 1.4e-22 110.5 129 52.7
Thhalv10003154m.g Eutrema salsugineum HOM05D002279 ORTHO05D002644 3.9e-20 102.4 119 54.6
Aa31LG5G3310 Aethionema arabicum HOM05D002279 ORTHO05D002644 5.6e-19 98.6 102 57.8
Lalb_Chr01g0019501 Lupinus albus HOM05D002279 ORTHO05D002644 4.7e-18 95.5 125 47.2
Actinidia23696 Actinidia chinensis HOM05D002279 ORTHO05D002644 2.3e-17 93.2 124 42.7
Duzib211G0092 Durio zibethinus HOM05D002279 ORTHO05D002644 4.0e-17 92.4 125 46.4
SGA_v2.0_scaffold138G35188 Striga asiatica HOM05D002279 ORTHO05D002644 5.2e-17 92.0 111 49.5
Atru.chr5.1840 Acer truncatum HOM05D002279 ORTHO05D002644 6.8e-17 91.7 129 43.4
Cpa.g.sc87.24 Carica papaya HOM05D002279 ORTHO05D002644 8.9e-17 91.3 126 46.8
GSVIVG01028423001 Vitis vinifera HOM05D002279 ORTHO05D002644 8.9e-17 91.3 127 45.7
Dinv16397 Davidia involucrata HOM05D002279 ORTHO05D002644 1.2e-16 90.9 124 45.2
Gorai.001G237700 Gossypium raimondii HOM05D002279 ORTHO05D002644 1.5e-16 90.5 129 45.7
TAR365G0294 Trochodendron aralioides HOM05D002279 ORTHO05D002644 1.5e-16 90.5 125 45.6
Gohir.D07G210300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 2.0e-16 90.1 129 45.7
BcaC07g36934 Brassica carinata HOM05D002279 ORTHO05D002644 2.6e-16 89.7 62 75.8
Thecc.01G250900 Theobroma cacao HOM05D002279 ORTHO05D002644 2.6e-16 89.7 129 45.0
Lalb_Chr20g0113641 Lupinus albus HOM05D002279 ORTHO05D002644 3.4e-16 89.4 125 44.8
Gohir.A07G204300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 5.8e-16 88.6 131 44.3
Nitab4.5_0000845g0220 Nicotiana tabacum HOM05D002279 ORTHO05D002644 9.8e-16 87.8 124 45.2
Atru.chr1.1182 Acer truncatum HOM05D002279 ORTHO05D002644 2.2e-15 86.7 115 47.8
Dinv34672 Davidia involucrata HOM05D002279 ORTHO05D002644 2.2e-15 86.7 127 45.7
Duzib133G0328 Durio zibethinus HOM05D002279 ORTHO05D002644 2.2e-15 86.7 129 45.0
Gohir.D07G158300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 2.9e-15 86.3 129 44.2
Lj1g0017598 Lotus japonicus HOM05D002279 ORTHO05D002644 2.9e-15 86.3 125 42.4
Manes.13G040100 Manihot esculenta HOM05D002279 ORTHO05D002644 2.9e-15 86.3 123 44.7
Cfa002480 Carpinus fangiana HOM05D002279 ORTHO05D002644 3.7e-15 85.9 126 44.4
PSO017G4536 Papaver somniferum HOM05D002279 ORTHO05D002644 3.7e-15 85.9 127 45.7
QL09p041332 Quercus lobata HOM05D002279 ORTHO05D002644 3.7e-15 85.9 127 42.5
Gorai.007G149700 Gossypium raimondii HOM05D002279 ORTHO05D002644 4.9e-15 85.5 125 44.0
Ciclev10018866m.g Citrus clementina HOM05D002279 ORTHO05D002644 6.4e-15 85.1 120 50.0
PSO063G2201 Papaver somniferum HOM05D002279 ORTHO05D002644 6.4e-15 85.1 126 44.4
Psat1g077920 Pisum sativum HOM05D002279 ORTHO05D002644 6.4e-15 85.1 123 44.7
Psat1g078680 Pisum sativum HOM05D002279 ORTHO05D002644 6.4e-15 85.1 123 44.7
Gorai.001G181500 Gossypium raimondii HOM05D002279 ORTHO05D002644 1.4e-14 84.0 127 44.9
Nitab4.5_0007760g0020 Nicotiana tabacum HOM05D002279 ORTHO05D002644 1.4e-14 84.0 124 43.5
Hma1.2p1_0273F.1_g109230 Hydrangea macrophylla HOM05D002279 ORTHO05D002644 2.4e-14 83.2 123 44.7
MD00G1060100 Malus domestica HOM05D002279 ORTHO05D002644 2.4e-14 83.2 129 44.2
CiPaw.03G270500 Carya illinoinensis HOM05D002279 ORTHO05D002644 3.2e-14 82.8 126 42.9
Gohir.D11G139400 Gossypium hirsutum HOM05D002279 ORTHO05D002644 3.2e-14 82.8 125 43.2
Prupe.8G215900 Prunus persica HOM05D002279 ORTHO05D002644 5.4e-14 82.0 127 42.5
Sabra02G0195500 Salix brachista HOM05D002279 ORTHO05D002644 5.4e-14 82.0 127 44.1
CANSAT01G3007 Cannabis sativa HOM05D002279 ORTHO05D002644 7.1e-14 81.6 132 42.4
MD05G1189300 Malus domestica HOM05D002279 ORTHO05D002644 7.1e-14 81.6 129 45.0
VMungo1383G2023 Vigna mungo HOM05D002279 ORTHO05D002644 7.1e-14 81.6 124 42.7
Migut.D00473 Erythranthe guttata HOM05D002279 ORTHO05D002644 9.2e-14 81.3 121 43.8
Glyma.03G167000 Glycine max HOM05D002279 ORTHO05D002644 9.2e-14 81.3 125 41.6
Glyma.19G168100 Glycine max HOM05D002279 ORTHO05D002644 9.2e-14 81.3 125 41.6
TWI18G0730 Tripterygium wilfordii HOM05D002279 ORTHO05D002644 9.2e-14 81.3 127 40.9
Gohir.A11G133300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 1.2e-13 80.9 125 42.4
Oeu052078.1 Olea europaea HOM05D002279 ORTHO05D002644 1.2e-13 80.9 117 41.9
Hund05483 Selenicereus undatus HOM05D002279 ORTHO05D002644 1.2e-13 80.9 120 47.5
FvH4_2g20550 Fragaria vesca HOM05D002279 ORTHO05D002644 1.6e-13 80.5 125 46.4
FAN24G2116 Fragaria x ananassa HOM05D002279 ORTHO05D002644 1.6e-13 80.5 125 46.4
SGA_v2.0_scaffold1G00650 Striga asiatica HOM05D002279 ORTHO05D002644 1.6e-13 80.5 123 43.1
TWI12G1034 Tripterygium wilfordii HOM05D002279 ORTHO05D002644 2.1e-13 80.1 127 40.2
FAN27G1575 Fragaria x ananassa HOM05D002279 ORTHO05D002644 2.7e-13 79.7 121 45.5
arahy.Tifrunner.gnm1.ann1.CGPP17 Arachis hypogaea HOM05D002279 ORTHO05D002644 3.5e-13 79.3 123 45.5
arahy.Tifrunner.gnm1.ann1.UG1CCZ Arachis hypogaea HOM05D002279 ORTHO05D002644 3.5e-13 79.3 123 45.5
Medtr7g098430 Medicago truncatula HOM05D002279 ORTHO05D002644 3.5e-13 79.3 128 41.4
Nn3g19779 Nelumbo nucifera HOM05D002279 ORTHO05D002644 3.5e-13 79.3 124 43.5
Phvul.001G164500 Phaseolus vulgaris HOM05D002279 ORTHO05D002644 3.5e-13 79.3 124 41.1
Potri.002G257100 Populus trichocarpa HOM05D002279 ORTHO05D002644 3.5e-13 79.3 127 44.9
VMungo0647G0533 Vigna mungo HOM05D002279 ORTHO05D027816 3.5e-13 79.3 110 46.4
Actinidia37548 Actinidia chinensis HOM05D002279 ORTHO05D002644 4.6e-13 79.0 142 37.3
CsaV3_6G007400 Cucumis sativus L. HOM05D002279 ORTHO05D002644 4.6e-13 79.0 122 41.8
TPR.G20054 Trifolium pratense HOM05D002279 ORTHO05D002644 4.6e-13 79.0 125 42.4
Aqoxy2G03747 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 6.0e-13 78.6 126 42.1
AUR62025445 Chenopodium quinoa HOM05D002279 ORTHO05D002644 6.0e-13 78.6 120 45.0
MBI10_g26043_MAGBIO Magnolia biondii HOM05D002279 ORTHO05D002644 6.0e-13 78.6 122 41.8
Ca_08738_v3 Cicer arietinum L. HOM05D002279 ORTHO05D002644 7.8e-13 78.2 124 42.7
Oeu015430.1 Olea europaea HOM05D002279 ORTHO05D002644 7.8e-13 78.2 125 42.4
RcHm_v2.0_Chr6g0286711 Rosa chinensis HOM05D002279 ORTHO05D002644 7.8e-13 78.2 100 54.0
Actinidia30129 Actinidia chinensis HOM05D002279 ORTHO05D002644 1.0e-12 77.8 126 38.9
MELO3C022388.2 Cucumis melo HOM05D002279 ORTHO05D002644 1.3e-12 77.4 122 41.0
CiPaw.04G190300 Carya illinoinensis HOM05D002279 ORTHO05D002644 1.7e-12 77.0 126 42.9
Peaxi162Scf00043g02923 Petunia axillaris HOM05D002279 ORTHO05D002644 1.7e-12 77.0 119 42.9
unitig_22.g6301 Utricularia gibba HOM05D002279 ORTHO05D002644 2.3e-12 76.6 116 44.0
AUR62008790 Chenopodium quinoa HOM05D002279 ORTHO05D002644 3.0e-12 76.3 79 54.4
Psat3g055080 Pisum sativum HOM05D002279 ORTHO05D002644 3.0e-12 76.3 104 48.1
Ah.08g218250 Amaranthus hybridus HOM05D002279 ORTHO05D002644 6.6e-12 75.1 120 44.2
ATR0787G201 Amborella trichopoda HOM05D002279 ORTHO05D002644 6.6e-12 75.1 122 43.4
Sc24g0003670 Simmondsia chinensis HOM05D002279 ORTHO05D002644 6.6e-12 75.1 109 45.9
EL10Ac7g17680 Beta vulgaris HOM05D002279 ORTHO05D002644 8.6e-12 74.7 139 41.0
CAN.G536.17 Capsicum annuum HOM05D002279 ORTHO05D002644 8.6e-12 74.7 121 41.3
vmacro14798 Vaccinium macrocarpon HOM05D002279 ORTHO05D002644 1.1e-11 74.3 141 38.3
ClCG06G001450 Citrullus lanatus HOM05D002279 ORTHO05D002644 1.5e-11 73.9 99 48.5
Sed0023704 Sechium edule HOM05D002279 ORTHO05D002644 1.5e-11 73.9 99 47.5
VMungo0464G1959 Vigna mungo HOM05D002279 ORTHO05D027816 1.9e-11 73.6 79 54.4
Aqoxy7G02303 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 2.5e-11 73.2 81 53.1
Cc01_g17830 Coffea canephora HOM05D002279 ORTHO05D002644 2.5e-11 73.2 124 40.3
Sopen09g025760 Solanum pennellii HOM05D002279 ORTHO05D002644 7.3e-11 71.6 121 42.1
ECA248G1198 Erigeron canadensis HOM05D002279 ORTHO05D002644 1.6e-10 70.5 125 39.2
Nn1g02962 Nelumbo nucifera HOM05D002279 ORTHO05D002644 1.6e-10 70.5 127 40.9
Lsat_1_v5_gn_5_181380 Lactuca sativa HOM05D002279 ORTHO05D002644 2.1e-10 70.1 113 40.7
unitig_8.g3073 Utricularia gibba HOM05D002279 ORTHO05D002644 2.1e-10 70.1 121 39.7
Hma1.2p1_1930F.1_g307920 Hydrangea macrophylla HOM05D002279 ORTHO05D002644 3.6e-10 69.3 86 51.2
THA.LOC104801556 Tarenaya hassleriana HOM05D002279 ORTHO05D002644 4.7e-10 68.9 47 72.3
Gohir.A07G152100 Gossypium hirsutum HOM05D002279 ORTHO05D002644 6.2e-10 68.6 57 61.4
HanXRQChr01g0015001 Helianthus annuus HOM05D002279 ORTHO05D002644 6.2e-10 68.6 123 41.5
Potri.014G192800 Populus trichocarpa HOM05D002279 ORTHO05D002644 6.2e-10 68.6 93 51.6
CDE05G3533 Ceratophyllum demersum HOM05D002279 ORTHO05D002644 8.1e-10 68.2 81 44.4
TAR636G1664 Trochodendron aralioides HOM05D002279 ORTHO05D002644 8.1e-10 68.2 81 51.9
Sp2g08790 Schrenkiella parvula HOM05D002279 ORTHO05D002644 1.1e-09 67.8 85 50.6
Lj2A1143T49 Lonicera japonica HOM05D002279 ORTHO05D002644 3.1e-09 66.2 127 40.9
DCAR_004690 Daucus carota HOM05D002279 ORTHO05D002644 4.0e-09 65.9 123 42.3
HPP92_019939 Vanilla planifolia HOM05D002279 ORTHO05D002644 3.4e-08 62.8 118 40.7
HPP92_021812 Vanilla planifolia HOM05D002279 ORTHO05D002644 7.6e-08 61.6 118 39.0
MBI07_g23231_MAGBIO Magnolia biondii HOM05D002279 ORTHO05D002644 9.9e-08 61.2 93 47.3
Lj1C73G6 Lonicera japonica HOM05D002279 ORTHO05D002644 1.3e-07 60.8 131 36.6
PGR119G1284 Punica granatum HOM05D002279 ORTHO05D002644 1.3e-07 60.8 123 38.2
SEGI_33332 Sequoiadendron giganteum HOM05D002279 ORTHO05D002644 2.9e-07 59.7 99 38.4
Os03g0210400 Oryza sativa ssp. japonica HOM05D002279 ORTHO05D002644 6.4e-07 58.5 111 37.8
CSS0038534 Camellia sinensis var. sinensis HOM05D002279 ORTHO05D002644 2.4e-06 56.6 116 37.1
A05p19340 Brassica napus HOM05D003431 ORTHO05D014368 9.2e-06 54.7 70 48.6


User provided reference genes

Program Settings