Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 8.1e-236 820.1 429 100.0
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 4.6e-231 804.3 429 98.1
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 5.1e-230 800.8 429 97.7
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.5e-197 693.0 452 82.7
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 1.5e-197 693.0 452 82.7
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 2.1e-196 689.1 445 82.7
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.4e-195 686.4 448 82.1
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 1.6e-191 672.9 442 81.7
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 3.5e-191 671.8 455 80.7
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 6.7e-190 667.5 363 97.2
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 5.7e-181 637.9 449 75.9
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 7.4e-181 637.5 449 76.2
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 3.7e-180 635.2 449 75.9
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 8.2e-180 634.0 449 75.1
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 5.9e-178 627.9 451 73.8
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 7.7e-178 627.5 449 75.3
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 2.1e-175 619.4 442 74.9
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 7.9e-175 617.5 442 74.7
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 5.1e-174 614.8 447 74.3
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 2.8e-172 609.0 444 73.4
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 2.8e-172 609.0 444 73.4
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 2.8e-172 609.0 444 73.4
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 4.8e-172 608.2 442 73.3
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 4.4e-165 585.1 448 69.9
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 4.4e-165 585.1 454 68.7
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 1.3e-164 583.6 445 69.4
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 8.2e-164 580.9 445 69.2
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 1.4e-163 580.1 451 67.2
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 5.3e-163 578.2 451 67.8
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 1.2e-162 577.0 433 70.4
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 1.6e-162 576.6 453 68.2
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 2.0e-162 576.2 459 68.2
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 4.5e-162 575.1 395 73.2
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 5.9e-162 574.7 448 67.4
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 8.5e-161 570.9 453 65.6
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 1.5e-160 570.1 445 68.1
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 3.2e-160 568.9 445 67.9
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 5.5e-160 568.2 459 67.8
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.2e-159 567.0 448 67.4
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 1.6e-159 566.6 449 67.0
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 1.6e-159 566.6 445 67.6
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 2.1e-159 566.2 432 69.0
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 3.6e-159 565.5 449 69.9
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 6.1e-159 564.7 431 68.0
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 6.1e-159 564.7 448 66.7
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 6.1e-159 564.7 450 65.8
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 1.0e-158 563.9 442 67.2
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 1.4e-158 563.5 452 65.3
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 2.3e-158 562.8 459 65.1
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 4.0e-158 562.0 458 66.4
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 5.2e-158 561.6 426 68.8
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 5.2e-158 561.6 450 66.2
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 6.7e-158 561.2 455 66.2
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 8.8e-158 560.8 457 65.9
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 8.8e-158 560.8 362 78.5
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 1.5e-157 560.1 454 66.3
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 1.5e-157 560.1 457 67.6
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 3.3e-157 558.9 401 71.6
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 3.3e-157 558.9 382 73.6
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 5.7e-157 558.1 436 67.9
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 7.5e-157 557.8 454 64.5
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 9.7e-157 557.4 415 70.1
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 1.3e-156 557.0 450 66.4
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 1.7e-156 556.6 441 66.9
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 3.7e-156 555.4 437 67.3
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 3.7e-156 555.4 395 71.9
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 8.2e-156 554.3 454 66.3
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 1.4e-155 553.5 448 65.2
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 1.8e-155 553.1 452 65.5
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 2.4e-155 552.7 380 72.9
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 2.4e-155 552.7 380 72.9
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 2.4e-155 552.7 449 65.5
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 3.1e-155 552.4 404 71.3
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 4.1e-155 552.0 425 67.3
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 5.3e-155 551.6 380 72.6
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 5.3e-155 551.6 446 66.1
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 7.0e-155 551.2 430 68.8
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 9.1e-155 550.8 448 65.2
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 2.7e-154 549.3 447 63.5
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 2.7e-154 549.3 422 69.0
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 3.5e-154 548.9 375 73.3
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 4.5e-154 548.5 452 65.7
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 7.7e-154 547.7 448 67.2
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 1.0e-153 547.4 370 71.9
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.3e-153 547.0 451 65.0
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.3e-153 547.0 451 65.0
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 1.3e-153 547.0 455 64.6
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 5.0e-153 545.0 443 65.7
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 1.1e-152 543.9 423 68.6
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 1.9e-152 543.1 452 63.1
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 2.5e-152 542.7 448 64.5
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 3.2e-152 542.3 422 68.0
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 2.7e-151 539.3 423 69.0
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 2.7e-151 539.3 435 65.3
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 1.5e-149 533.5 447 63.5
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 1.3e-148 530.4 278 98.9
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 7.7e-146 521.2 428 63.8
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 1.2e-141 507.3 362 71.5
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 1.7e-140 503.4 341 73.0
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 3.5e-138 495.7 457 58.9
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 1.5e-136 490.3 366 69.9
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.2e-131 472.6 390 64.9
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 2.3e-126 456.4 320 72.5
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 2.1e-122 443.4 307 73.0
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 2.8e-119 433.0 419 57.5
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 4.7e-119 432.2 311 70.4
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 4.0e-118 429.1 454 54.6
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 4.0e-118 429.1 385 60.0
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 3.7e-116 422.5 373 60.1
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 4.6e-114 415.6 289 72.3
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 1.1e-112 411.0 301 69.8
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 1.1e-112 411.0 372 56.2
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 6.2e-111 405.2 282 72.7
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 1.1e-110 404.4 371 56.6
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 2.4e-110 403.3 369 57.5
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.3e-100 370.9 363 55.6
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 8.4e-100 368.2 320 61.2
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 2.7e-98 363.2 281 67.6
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.0e-97 361.3 364 54.4
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 2.4e-94 350.1 381 52.0
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 4.5e-93 345.9 378 52.1
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 7.6e-93 345.1 355 52.4
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 1.1e-91 341.3 340 56.2
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 1.8e-86 323.9 368 51.6
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 7.6e-85 318.5 243 70.0
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 2.7e-82 310.1 383 45.4
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 2.7e-74 283.5 434 46.5
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 1.2e-61 241.5 429 42.9
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 1.1e-48 198.4 150 68.7
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 1.3e-47 194.9 222 53.6
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.8e-38 164.5 164 53.0
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.0e-36 158.7 115 67.0
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 2.9e-36 157.1 177 52.0
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.2e-29 135.2 83 73.5
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.7e-28 131.3 107 62.6
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.5e-27 126.3 171 42.7
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 1.7e-23 114.8 73 79.5
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 5.0e-20 103.2 87 67.8
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 1.6e-13 81.6 102 46.1
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 2.7e-13 80.9 87 46.0
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 2.3e-09 67.8 138 35.5
BolC4t27673H Brassica oleracea HOM05D005300 ORTHO05D006622 3.1e-09 67.4 126 42.9
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.0e-08 64.7 83 49.4


User provided reference genes

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