Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BolC5t28819H Brassica oleracea HOM05D005745 ORTHO05D006857 1.3e-246 855.9 427 100.0
C05p00290 Brassica napus HOM05D005745 ORTHO05D006857 4.6e-231 804.3 451 91.8
A10p00280 Brassica napus HOM05D005745 ORTHO05D006857 4.0e-219 764.6 428 91.8
BraA10t42305Z Brassica rapa HOM05D005745 ORTHO05D006857 1.2e-215 753.1 440 88.9
BcaB03g13612 Brassica carinata HOM05D005745 ORTHO05D006857 7.1e-200 700.7 428 86.2
Thhalv10007725m.g Eutrema salsugineum HOM05D005745 ORTHO05D006857 3.2e-192 675.2 429 83.0
CARHR000560 Cardamine hirsuta HOM05D005745 ORTHO05D006857 1.1e-184 650.2 431 80.7
Sp1g00540 Schrenkiella parvula HOM05D005745 ORTHO05D006857 1.1e-184 650.2 427 81.3
Carub.0001s0045 Capsella rubella HOM05D005745 ORTHO05D006857 9.0e-179 630.6 430 78.6
AL1G10580 Arabidopsis lyrata HOM05D005745 ORTHO05D006857 2.7e-175 619.0 429 77.9
Aa31LG1G11130 Aethionema arabicum HOM05D005745 ORTHO05D006857 3.8e-169 598.6 449 72.8
AT1G01760 Arabidopsis thaliana HOM05D005745 ORTHO05D006857 1.2e-159 567.0 392 79.3
THA.LOC104817020 Tarenaya hassleriana HOM05D005745 ORTHO05D006857 8.8e-142 507.7 394 70.1
Cpa.g.sc18.234 Carica papaya HOM05D005745 ORTHO05D006857 3.2e-136 489.2 419 62.3
GSVIVG01026870001 Vitis vinifera HOM05D005745 ORTHO05D006857 1.7e-124 450.3 434 58.1
Dinv43791 Davidia involucrata HOM05D005745 ORTHO05D006857 2.2e-124 449.9 425 57.6
Actinidia20926 Actinidia chinensis HOM05D005745 ORTHO05D006857 4.1e-123 445.7 424 58.3
Sabra14G0059300 Salix brachista HOM05D005745 ORTHO05D006857 4.1e-123 445.7 427 57.6
Hma1.2p1_0001F.1_g001520 Hydrangea macrophylla HOM05D005745 ORTHO05D006857 4.5e-122 442.2 421 57.0
QL08p049437 Quercus lobata HOM05D005745 ORTHO05D006857 1.7e-121 440.3 428 58.2
CSS0024424 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 3.8e-121 439.1 420 57.1
Gohir.A12G105400 Gossypium hirsutum HOM05D005745 ORTHO05D006857 3.8e-121 439.1 428 56.5
Gohir.D12G109300 Gossypium hirsutum HOM05D005745 ORTHO05D006857 3.8e-121 439.1 428 57.0
Gorai.008G118400 Gossypium raimondii HOM05D005745 ORTHO05D006857 1.9e-120 436.8 428 56.8
CSS0038489 Camellia sinensis var. sinensis HOM05D005745 ORTHO05D006857 5.6e-120 435.3 420 56.7
Actinidia10034 Actinidia chinensis HOM05D005745 ORTHO05D006857 1.2e-119 434.1 424 57.3
VMungo0331G1900 Vigna mungo HOM05D005745 ORTHO05D006857 2.1e-119 433.3 423 56.7
Ciclev10020429m.g Citrus clementina HOM05D005745 ORTHO05D006857 1.4e-118 430.6 419 57.3
CiPaw.02G029400 Carya illinoinensis HOM05D005745 ORTHO05D006857 3.1e-118 429.5 424 56.1
TWI23G0914 Tripterygium wilfordii HOM05D005745 ORTHO05D006857 3.1e-118 429.5 455 53.2
Medtr8g031440 Medicago truncatula HOM05D005745 ORTHO05D006857 3.4e-117 426.0 417 56.8
Lj3g0021692 Lotus japonicus HOM05D005745 ORTHO05D006857 9.8e-117 424.5 425 56.0
Manes.01G259400 Manihot esculenta HOM05D005745 ORTHO05D006857 9.8e-117 424.5 432 54.9
Sc26g0000960 Simmondsia chinensis HOM05D005745 ORTHO05D006857 2.2e-116 423.3 422 55.5
Sopen05g028140 Solanum pennellii HOM05D005745 ORTHO05D006857 2.2e-116 423.3 418 54.8
Lalb_Chr04g0256771 Lupinus albus HOM05D005745 ORTHO05D006857 3.7e-116 422.5 428 56.3
CANSAT56G0536 Cannabis sativa HOM05D005745 ORTHO05D006857 6.4e-116 421.8 426 54.9
PGSC0003DMG400021653 Solanum tuberosum HOM05D005745 ORTHO05D006857 1.1e-115 421.0 418 54.3
vmacro13297 Vaccinium macrocarpon HOM05D005745 ORTHO05D006857 3.2e-115 419.5 423 55.8
TAR367G0002 Trochodendron aralioides HOM05D005745 ORTHO05D006857 4.1e-115 419.1 427 55.3
arahy.Tifrunner.gnm1.ann1.5YG8M2 Arachis hypogaea HOM05D005745 ORTHO05D006857 7.0e-115 418.3 420 55.2
arahy.Tifrunner.gnm1.ann1.JLYP5G Arachis hypogaea HOM05D005745 ORTHO05D006857 1.6e-114 417.2 420 55.0
MD01G1055100 Malus domestica HOM05D005745 ORTHO05D006857 6.0e-114 415.2 423 54.6
Cc02_g37770 Coffea canephora HOM05D005745 ORTHO05D006857 1.0e-113 414.5 421 53.0
Solyc05g048810.4 Solanum lycopersicum HOM05D005745 ORTHO05D006857 1.7e-113 413.7 415 54.2
Cfa003949 Carpinus fangiana HOM05D000683 ORTHO05D000507 2.3e-113 413.3 401 57.9
Peaxi162Scf00191g01322 Petunia axillaris HOM05D005745 ORTHO05D006857 1.1e-112 411.0 427 52.9
FAN06G1549 Fragaria x ananassa HOM05D005745 ORTHO05D006857 5.6e-112 408.7 423 54.8
PSO782G5186 Papaver somniferum HOM05D005745 ORTHO05D006857 7.3e-112 408.3 422 54.0
CAN.G1535.1 Capsicum annuum HOM05D005745 ORTHO05D006857 1.2e-111 407.5 431 52.7
EL10Ac1g00543 Beta vulgaris HOM05D005745 ORTHO05D006857 2.8e-111 406.4 426 52.1
DCAR_015932 Daucus carota HOM05D005745 ORTHO05D006857 2.8e-111 406.4 414 53.9
Nitab4.5_0007346g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 3.6e-111 406.0 439 53.5
AUR62033312 Chenopodium quinoa HOM05D005745 ORTHO05D006857 4.7e-111 405.6 427 53.4
SGA_v2.0_scaffold277G46666 Striga asiatica HOM05D005745 ORTHO05D006857 6.2e-111 405.2 424 54.5
FAN10G4182 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.1e-110 404.4 417 54.4
AUR62033347 Chenopodium quinoa HOM05D005745 ORTHO05D006857 3.1e-110 402.9 427 53.2
Nn6g33496 Nelumbo nucifera HOM05D005745 ORTHO05D006857 3.1e-110 402.9 418 53.3
PSO478G4474 Papaver somniferum HOM05D005745 ORTHO05D006857 3.1e-110 402.9 422 52.1
PGR042G0923 Punica granatum HOM05D005745 ORTHO05D006857 2.0e-109 400.2 437 53.3
MSTRG.17255 Avicennia marina HOM05D005745 ORTHO05D006857 2.6e-109 399.8 426 51.9
Lalb_Chr10g0097191 Lupinus albus HOM05D005745 ORTHO05D006857 3.4e-109 399.4 421 53.7
Lsat_1_v5_gn_7_5060 Lactuca sativa HOM05D005745 ORTHO05D006857 5.8e-109 398.7 416 54.6
Duzib138G1514 Durio zibethinus HOM05D005745 ORTHO05D006857 9.8e-109 397.9 364 58.0
Rhsim07G0017300 Rhododendron simsii HOM05D000683 ORTHO05D000507 2.9e-108 396.4 389 57.8
Hund27291 Selenicereus undatus HOM05D005745 ORTHO05D006857 6.4e-108 395.2 430 52.1
Haze_15472 Corylus avellana HOM05D005745 ORTHO05D006857 4.1e-107 392.5 418 54.1
Potri.014G081400 Populus trichocarpa HOM05D005745 ORTHO05D006857 1.2e-106 391.0 361 59.3
Eucgr.E00173 Eucalyptus grandis HOM05D005745 ORTHO05D006857 6.0e-106 388.7 428 51.2
Eucgr.E00169 Eucalyptus grandis HOM05D005745 ORTHO05D006857 1.0e-105 387.9 428 51.2
CsaV3_6G000430 Cucumis sativus L. HOM05D005745 ORTHO05D006857 2.3e-105 386.7 427 51.5
Aqoxy7G00357 Aquilegia oxysepala HOM05D005745 ORTHO05D006857 5.1e-105 385.6 424 49.8
CiPaw.02G029100 Carya illinoinensis HOM05D005745 ORTHO05D006857 2.5e-104 383.3 423 52.2
Oeu056358.1 Olea europaea HOM05D005745 ORTHO05D006857 2.5e-104 383.3 386 55.2
ECA236G3051 Erigeron canadensis HOM05D005745 ORTHO05D006857 3.3e-104 382.9 426 51.4
Lj7C516G5 Lonicera japonica HOM05D005745 ORTHO05D006857 4.7e-103 379.0 360 56.9
AUR62004330 Chenopodium quinoa HOM05D005745 ORTHO05D006857 9.9e-101 371.3 433 50.3
ClCG06G003860 Citrullus lanatus HOM05D005745 ORTHO05D006857 1.7e-97 360.5 498 44.8
Ah.05g176680 Amaranthus hybridus HOM05D005745 ORTHO05D006857 2.8e-95 353.2 411 49.9
Ca_23656_v3 Cicer arietinum L. HOM05D005745 ORTHO05D006857 2.4e-94 350.1 383 52.2
Gohir.A12G105450 Gossypium hirsutum HOM05D005745 ORTHO05D006857 1.5e-93 347.4 358 53.6
HanXRQChr04g0121611 Helianthus annuus HOM05D005745 ORTHO05D006857 3.4e-93 346.3 359 53.8
Sed0009525 Sechium edule HOM05D005745 ORTHO05D006857 5.8e-93 345.5 360 53.1
CiPaw.02G029200 Carya illinoinensis HOM05D005745 ORTHO05D006857 9.2e-91 338.2 361 53.5
Nitab4.5_0002262g0010 Nicotiana tabacum HOM05D005745 ORTHO05D006857 2.1e-90 337.0 415 47.7
Prupe.2G164800 Prunus persica HOM05D005745 ORTHO05D006857 1.2e-85 321.2 326 56.1
FAN03G1898 Fragaria x ananassa HOM05D005745 ORTHO05D006857 2.0e-85 320.5 417 47.0
RcHm_v2.0_Chr1g0354081 Rosa chinensis HOM05D005745 ORTHO05D006857 2.6e-85 320.1 442 46.4
MBI17_g21972_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 4.4e-85 319.3 410 46.3
HPP92_001499 Vanilla planifolia HOM05D005745 ORTHO05D006857 3.9e-81 306.2 384 46.1
Glyma.07G073300 Glycine max HOM05D005745 ORTHO05D006857 1.5e-80 304.3 319 54.2
Phvul.010G096200 Phaseolus vulgaris HOM05D005745 ORTHO05D006857 1.6e-79 300.8 285 59.3
Zm00001eb067600 Zea mays HOM05D005745 ORTHO05D006857 3.4e-77 293.1 428 41.8
MELO3C021221.2 Cucumis melo HOM05D005745 ORTHO05D006857 9.9e-77 291.6 394 46.2
MBI18_g01486_MAGBIO Magnolia biondii HOM05D005745 ORTHO05D006857 1.2e-74 284.6 411 43.6
FvH4_7g13861 Fragaria vesca HOM05D005745 ORTHO05D006857 2.1e-74 283.9 339 49.3
Psat4g154320 Pisum sativum HOM05D005745 ORTHO05D006857 3.9e-73 279.6 284 55.6
Mapoly0023s0060 Marchantia polymorpha HOM05D005745 ORTHO05D006857 1.9e-72 277.3 520 36.2
TPR.G39633 Trifolium pratense HOM05D005745 ORTHO05D006857 1.9e-72 277.3 216 63.9
CDE06G1611 Ceratophyllum demersum HOM05D005745 ORTHO05D006857 2.4e-70 270.4 423 40.0
Atru.BG.56.p Acer truncatum HOM05D005745 ORTHO05D006857 5.3e-70 269.2 353 45.9
Pp3c4_14060 Physcomitrium patens HOM05D005745 ORTHO05D006857 2.8e-63 246.9 514 34.4
FAN06G0933 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.2e-61 241.5 296 50.0
AagrBONN_evm.TU.Sc2ySwM_362.160 Anthoceros agrestis HOM05D005745 ORTHO05D006857 5.5e-59 232.6 460 35.0
AUR62003100 Chenopodium quinoa HOM05D005745 ORTHO05D006857 9.3e-59 231.9 180 61.1
Os04g0683500 Oryza sativa ssp. japonica HOM05D005745 ORTHO05D006857 7.9e-58 228.8 317 44.2
AUR62034353 Chenopodium quinoa HOM05D005745 ORTHO05D006857 1.9e-56 224.2 181 60.2
Glyma.03G013600 Glycine max HOM05D005745 ORTHO05D006857 5.7e-56 222.6 284 48.6
SHI13462 Sapria himalayana HOM05D005745 ORTHO05D006857 4.8e-55 219.5 425 37.6
ATR0594G105 Amborella trichopoda HOM05D005745 ORTHO05D006857 4.1e-54 216.5 274 46.4
Thecc.01G362500 Theobroma cacao HOM05D005745 ORTHO05D006857 1.7e-52 211.1 238 50.8
Zm00001eb420790 Zea mays HOM05D005745 ORTHO05D006857 2.5e-51 207.2 217 48.8
unitig_26.g9734 Utricularia gibba HOM05D005745 ORTHO05D006857 4.2e-51 206.5 361 38.5
Prupe.2G165000 Prunus persica HOM05D005745 ORTHO05D006857 3.8e-44 183.3 414 35.0
Zm00001eb191880 Zea mays HOM05D009386 ORTHO05D006857 9.4e-43 178.7 179 50.8
MD07G1140200 Malus domestica HOM05D005745 ORTHO05D006857 6.7e-41 172.6 307 39.7
TPR.G4413 Trifolium pratense HOM05D005745 ORTHO05D006857 7.7e-37 159.1 153 60.1
SEGI_32011 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 2.5e-35 154.1 193 45.1
SMO266G0032 Selaginella moellendorffii HOM05D005745 ORTHO05D006857 1.6e-34 151.4 287 37.3
Oeu056357.1 Olea europaea HOM05D005745 ORTHO05D006857 5.7e-32 142.9 156 53.2
AUR62034238 Chenopodium quinoa HOM05D002177 ORTHO05D002257 3.7e-31 140.2 111 58.6
AUR62019766 Chenopodium quinoa HOM05D005745 ORTHO05D006857 5.3e-30 136.3 108 57.4
MCO02G004 Micromonas commoda HOM05D005745 ORTHO05D006857 8.5e-28 129.0 418 28.5
Prupe.2G164500 Prunus persica HOM05D005745 ORTHO05D006857 1.2e-26 125.2 160 50.6
Glyma.03G013550 Glycine max HOM05D005745 ORTHO05D006857 1.8e-25 121.3 83 69.9
Atru.chr5.475 Acer truncatum HOM05D005745 ORTHO05D006857 3.0e-25 120.6 86 67.4
EL10Ac7g17708 Beta vulgaris HOM05D005745 ORTHO05D006857 2.6e-24 117.5 93 61.3
Zm00001eb442120 Zea mays HOM05D009386 ORTHO05D006857 4.4e-24 116.7 148 44.6
Oeu056356.1 Olea europaea HOM05D005745 ORTHO05D006857 9.8e-24 115.5 92 62.0
SEGI_32349 Sequoiadendron giganteum HOM05D005745 ORTHO05D006857 3.7e-23 113.6 88 61.4
COL.COLO4_12683 Corchorus olitorius HOM05D000683 ORTHO05D000507 1.1e-22 112.1 135 46.7
PRCOL_00000230 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 7.0e-22 109.4 424 27.8
FAN01G0854 Fragaria x ananassa HOM05D005745 ORTHO05D006857 1.1e-19 102.1 150 46.0
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 6.1e-18 96.3 387 24.8
Cre14.g629283 Chlamydomonas reinhardtii HOM05D005745 ORTHO05D006857 4.5e-13 80.1 102 46.1
PRCOL_00001873 Prasinoderma coloniale HOM05D005745 ORTHO05D006857 7.7e-13 79.3 274 26.6
MCO14G396 Micromonas commoda HOM05D005745 ORTHO05D006857 3.3e-11 73.9 270 27.8
MCO15G493 Micromonas commoda HOM05D005745 ORTHO05D006857 8.9e-09 65.9 313 24.3


User provided reference genes

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