Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung07365 Brassica carinata HOM05D005088 ORTHO05D006914 4.4e-128 461.5 258 100.0
BcaC07g39962 Brassica carinata HOM05D005088 ORTHO05D006914 1.0e-116 423.7 259 94.2
A09p49430 Brassica napus HOM05D005088 ORTHO05D006914 1.5e-115 419.9 253 94.5
BraA09t40396Z Brassica rapa HOM05D005088 ORTHO05D006914 1.5e-115 419.9 253 94.5
Thhalv10006186m.g Eutrema salsugineum HOM05D005088 ORTHO05D006914 7.2e-115 417.5 258 82.9
BolC8t50800H Brassica oleracea HOM05D005088 ORTHO05D006914 4.7e-114 414.8 254 94.1
Carub.0005s2328 Capsella rubella HOM05D005088 ORTHO05D006914 1.3e-111 406.8 258 84.5
AL5G37860 Arabidopsis lyrata HOM05D005088 ORTHO05D006914 3.2e-110 402.1 258 86.4
C08p31790 Brassica napus HOM05D005088 ORTHO05D006914 5.4e-110 401.4 278 86.0
AT3G56510 Arabidopsis thaliana HOM05D005088 ORTHO05D006914 1.7e-108 396.4 258 77.9
Aa31LG2G11590 Aethionema arabicum HOM05D005088 ORTHO05D006914 5.6e-107 391.3 257 77.4
CARHR166630 Cardamine hirsuta HOM05D005088 ORTHO05D006914 5.6e-107 391.3 218 87.6
BcaNung07083 Brassica carinata HOM05D005088 ORTHO05D006914 1.2e-104 383.6 198 98.0
THA.LOC104820717 Tarenaya hassleriana HOM05D005088 ORTHO05D006914 1.4e-94 350.1 218 77.5
GSVIVG01008659001 Vitis vinifera HOM05D005088 ORTHO05D006914 1.3e-87 327.0 218 71.6
TAR371G0548 Trochodendron aralioides HOM05D005088 ORTHO05D006914 9.6e-83 310.8 260 60.8
Actinidia36135 Actinidia chinensis HOM05D005088 ORTHO05D006914 5.2e-81 305.1 216 69.0
Manes.15G152700 Manihot esculenta HOM05D005088 ORTHO05D006914 5.2e-81 305.1 216 69.0
Cpa.g.sc130.68 Carica papaya HOM05D005088 ORTHO05D006914 1.3e-79 300.4 176 81.2
CSS0015220 Camellia sinensis var. sinensis HOM05D005088 ORTHO05D006914 1.7e-79 300.1 214 70.1
PGR142G2056 Punica granatum HOM05D005088 ORTHO05D006914 2.9e-79 299.3 219 66.2
Lsat_1_v5_gn_7_9521 Lactuca sativa HOM05D005088 ORTHO05D006914 8.4e-79 297.7 218 66.5
Solyc10g008130.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 8.4e-79 297.7 219 64.4
Sopen10g004000 Solanum pennellii HOM05D005088 ORTHO05D006914 8.4e-79 297.7 219 64.4
PGSC0003DMG400021851 Solanum tuberosum HOM05D005088 ORTHO05D006914 8.4e-79 297.7 219 64.4
vmacro05886 Vaccinium macrocarpon HOM05D005088 ORTHO05D006914 8.4e-79 297.7 214 68.7
RhsimUnG0087300 Rhododendron simsii HOM05D005088 ORTHO05D006914 1.1e-78 297.4 216 69.0
RhsimUnG0006300 Rhododendron simsii HOM05D005088 ORTHO05D006914 1.4e-78 297.0 216 69.0
TWI63G0383 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 3.2e-78 295.8 219 66.2
ECA236G2300 Erigeron canadensis HOM05D005088 ORTHO05D006914 4.2e-78 295.4 218 65.6
Peaxi162Scf00420g00135 Petunia axillaris HOM05D005088 ORTHO05D006914 5.4e-78 295.0 219 65.3
Atru.chr6.2443 Acer truncatum HOM05D005088 ORTHO05D006914 3.5e-77 292.4 224 67.0
Nn2g12382 Nelumbo nucifera HOM05D005088 ORTHO05D006914 3.5e-77 292.4 222 66.7
Sopen01g054060 Solanum pennellii HOM05D005088 ORTHO05D006914 6.0e-77 291.6 219 62.6
HanXRQChr04g0122711 Helianthus annuus HOM05D005088 ORTHO05D006914 1.0e-76 290.8 218 65.1
Duzib147G1185 Durio zibethinus HOM05D005088 ORTHO05D006914 1.3e-76 290.4 220 65.9
Ciclev10015979m.g Citrus clementina HOM05D005088 ORTHO05D006914 1.7e-76 290.0 222 64.9
TWI73G1260 Tripterygium wilfordii HOM05D005088 ORTHO05D006914 2.3e-76 289.7 219 65.3
Migut.H00031 Erythranthe guttata HOM05D005088 ORTHO05D006914 5.1e-76 288.5 218 64.7
Nitab4.5_0006478g0030 Nicotiana tabacum HOM05D005088 ORTHO05D006914 6.6e-76 288.1 219 63.0
CiPaw.03G046700 Carya illinoinensis HOM05D005088 ORTHO05D006914 1.9e-75 286.6 256 57.4
Nitab4.5_0001562g0080 Nicotiana tabacum HOM05D005088 ORTHO05D006914 3.3e-75 285.8 214 63.1
Nitab4.5_0006683g0110 Nicotiana tabacum HOM05D005088 ORTHO05D006914 5.6e-75 285.0 212 63.2
CsaV3_5G026950 Cucumis sativus L. HOM05D005088 ORTHO05D006914 7.3e-75 284.6 220 64.5
PSO063G5784 Papaver somniferum HOM05D005088 ORTHO05D006914 7.3e-75 284.6 222 64.0
Sc14g0003070 Simmondsia chinensis HOM05D005088 ORTHO05D006914 2.8e-74 282.7 212 67.5
Thecc.04G021300 Theobroma cacao HOM05D005088 ORTHO05D006914 4.8e-74 282.0 220 64.5
Nitab4.5_0001357g0120 Nicotiana tabacum HOM05D005088 ORTHO05D006914 6.2e-74 281.6 212 63.2
Oeu013966.1 Olea europaea HOM05D005088 ORTHO05D006914 6.2e-74 281.6 216 65.7
Gohir.A07G224400 Gossypium hirsutum HOM05D005088 ORTHO05D006914 1.1e-73 280.8 216 65.7
Haze_14769 Corylus avellana HOM05D005088 ORTHO05D006914 1.4e-73 280.4 218 62.8
Sed0009164 Sechium edule HOM05D005088 ORTHO05D006914 1.8e-73 280.0 219 62.6
Gorai.001G266900 Gossypium raimondii HOM05D005088 ORTHO05D006914 3.1e-73 279.3 214 66.4
SalBow8G2200 Salvia bowleyana HOM05D005088 ORTHO05D006914 4.0e-73 278.9 215 64.7
ClCG09G019430 Citrullus lanatus HOM05D005088 ORTHO05D006914 5.3e-73 278.5 212 64.2
Gohir.D07G231700 Gossypium hirsutum HOM05D005088 ORTHO05D006914 5.3e-73 278.5 215 65.6
PSO754G0075 Papaver somniferum HOM05D005088 ORTHO05D006914 6.9e-73 278.1 222 62.6
Dinv22813 Davidia involucrata HOM05D005088 ORTHO05D006914 9.0e-73 277.7 199 67.8
EL10Ac6g15396 Beta vulgaris HOM05D005088 ORTHO05D006914 1.2e-72 277.3 206 67.0
Potri.001G341300 Populus trichocarpa HOM05D005088 ORTHO05D006914 1.2e-72 277.3 225 64.9
SalBow4G2808 Salvia bowleyana HOM05D005088 ORTHO05D006914 3.4e-72 275.8 215 63.7
MELO3C021598.2 Cucumis melo HOM05D005088 ORTHO05D006914 4.4e-72 275.4 211 63.5
ATR1136G111 Amborella trichopoda HOM05D005088 ORTHO05D006914 1.3e-71 273.9 216 63.0
CANSAT64G2170 Cannabis sativa HOM05D005088 ORTHO05D006914 1.3e-71 273.9 219 62.6
arahy.Tifrunner.gnm1.ann1.NBA2EB Arachis hypogaea HOM05D005088 ORTHO05D006914 3.8e-71 272.3 213 64.3
arahy.Tifrunner.gnm1.ann1.XI631Y Arachis hypogaea HOM05D005088 ORTHO05D006914 1.9e-70 270.0 210 63.8
Glyma.19G052200 Glycine max HOM05D005088 ORTHO05D006914 2.4e-70 269.6 218 61.9
unitig_748.g6973 Utricularia gibba HOM05D005088 ORTHO05D006914 4.2e-70 268.9 215 61.4
Hma1.2p1_0587F.1_g183900 Hydrangea macrophylla HOM05D005088 ORTHO05D006914 7.1e-70 268.1 162 77.2
CDE02G1254 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 9.3e-70 267.7 218 59.2
PGSC0003DMG400010550 Solanum tuberosum HOM05D005088 ORTHO05D006914 9.3e-70 267.7 199 64.3
Glyma.05G115100 Glycine max HOM05D005088 ORTHO05D006914 1.2e-69 267.3 208 63.5
CANSAT64G1390 Cannabis sativa HOM05D005088 ORTHO05D006914 2.1e-69 266.5 219 60.7
Prupe.3G295300 Prunus persica HOM05D005088 ORTHO05D006914 2.1e-69 266.5 248 55.2
DCAR_011267 Daucus carota HOM05D005088 ORTHO05D006914 4.6e-69 265.4 211 63.0
Actinidia05972 Actinidia chinensis HOM05D005088 ORTHO05D006914 6.0e-69 265.0 216 63.0
Sabra16G0221300 Salix brachista HOM05D005088 ORTHO05D006914 7.9e-69 264.6 220 62.7
Psat1g081640 Pisum sativum HOM05D005088 ORTHO05D006914 1.0e-68 264.2 218 60.1
VMungo0464G1582 Vigna mungo HOM05D005088 ORTHO05D006914 1.0e-68 264.2 219 61.2
MD17G1021200 Malus domestica HOM05D005088 ORTHO05D006914 1.3e-68 263.8 211 63.0
QL02p073814 Quercus lobata HOM05D005088 ORTHO05D006914 1.3e-68 263.8 218 60.6
SEGI_26999 Sequoiadendron giganteum HOM05D005088 ORTHO05D006914 1.3e-68 263.8 250 54.0
FvH4_6g52000 Fragaria vesca HOM05D005088 ORTHO05D006914 2.3e-68 263.1 219 59.4
PSO210G1672 Papaver somniferum HOM05D005088 ORTHO05D006914 2.3e-68 263.1 221 60.2
Sp5g06120 Schrenkiella parvula HOM05D005088 ORTHO05D006914 3.9e-68 262.3 264 58.7
PSO210G5838 Papaver somniferum HOM05D005088 ORTHO05D006914 5.1e-68 261.9 222 57.2
RcHm_v2.0_Chr2g0173471 Rosa chinensis HOM05D005088 ORTHO05D006914 5.1e-68 261.9 215 60.0
MD09G1021000 Malus domestica HOM05D005088 ORTHO05D006914 6.6e-68 261.5 213 62.4
arahy.Tifrunner.gnm1.ann1.NQR6QW Arachis hypogaea HOM05D005088 ORTHO05D006914 1.1e-67 260.8 226 59.7
FAN02G1545 Fragaria x ananassa HOM05D005088 ORTHO05D006914 1.5e-67 260.4 214 59.3
Phvul.004G060300 Phaseolus vulgaris HOM05D005088 ORTHO05D006914 2.5e-67 259.6 213 61.0
FAN05G1017 Fragaria x ananassa HOM05D005088 ORTHO05D006914 4.3e-67 258.8 214 58.9
Lalb_Chr06g0174471 Lupinus albus HOM05D005088 ORTHO05D006914 7.3e-67 258.1 218 57.3
Cc00_g04470 Coffea canephora HOM05D005088 ORTHO05D006914 1.3e-66 257.3 161 76.4
FAN14G4588 Fragaria x ananassa HOM05D005088 ORTHO05D006914 1.6e-66 256.9 214 58.9
Ah.15g098720 Amaranthus hybridus HOM05D005088 ORTHO05D006914 2.1e-66 256.5 214 60.7
FAN09G0922 Fragaria x ananassa HOM05D005088 ORTHO05D006914 1.1e-65 254.2 214 58.4
PGSC0003DMG400018652 Solanum tuberosum HOM05D005088 ORTHO05D006914 3.1e-65 252.7 202 60.9
Lj7A602T41 Lonicera japonica HOM05D005088 ORTHO05D006914 1.5e-64 250.4 164 72.0
HPP92_010722 Vanilla planifolia HOM05D005088 ORTHO05D006914 1.5e-64 250.4 211 60.2
Aqoxy7G00744 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 7.6e-64 248.1 213 57.7
Aqoxy5G03675 Aquilegia oxysepala HOM05D005088 ORTHO05D006914 1.3e-63 247.3 213 56.8
Medtr6g021760 Medicago truncatula HOM05D005088 ORTHO05D006914 3.8e-63 245.7 213 58.2
Lj4g0026117 Lotus japonicus HOM05D005088 ORTHO05D006914 1.4e-62 243.8 214 58.4
SHI10481 Sapria himalayana HOM05D005088 ORTHO05D006914 1.9e-59 233.4 238 52.9
Ciclev10017686m.g Citrus clementina HOM05D005088 ORTHO05D006914 2.5e-59 233.0 167 68.3
Pp3c15_21890 Physcomitrium patens HOM05D005088 ORTHO05D006914 2.1e-58 229.9 215 54.0
TAR629G0436 Trochodendron aralioides HOM05D005088 ORTHO05D006914 2.8e-58 229.6 173 64.7
CBR_g229 Chara braunii HOM05D005088 ORTHO05D006914 2.4e-57 226.5 221 49.8
Ca_04381_v3 Cicer arietinum L. HOM05D005088 ORTHO05D006914 2.4e-57 226.5 158 65.8
SpUn0233_0020 Schrenkiella parvula HOM05D005088 ORTHO05D006914 2.4e-57 226.5 135 88.1
Os07g0662600 Oryza sativa ssp. japonica HOM05D005088 ORTHO05D006914 9.0e-57 224.6 208 55.3
HPP92_010645 Vanilla planifolia HOM05D005088 ORTHO05D006914 1.2e-56 224.2 198 58.6
PSO782G2229 Papaver somniferum HOM05D005088 ORTHO05D006914 1.5e-56 223.8 224 54.9
Mapoly0020s0128 Marchantia polymorpha HOM05D005088 ORTHO05D006914 5.8e-56 221.9 214 51.4
Zm00001eb110920 Zea mays HOM05D005088 ORTHO05D006914 7.6e-56 221.5 209 54.5
Psat5g064920 Pisum sativum HOM05D005088 ORTHO05D006914 2.5e-54 216.5 214 53.3
Solyc01g112010.3 Solanum lycopersicum HOM05D005088 ORTHO05D006914 5.5e-54 215.3 165 63.0
BcaB02g08365 Brassica carinata HOM05D005088 ORTHO05D006914 3.5e-53 212.6 184 68.5
COL.COLO4_29189 Corchorus olitorius HOM05D005088 ORTHO05D006914 1.5e-51 207.2 168 61.3
TAR629G1146 Trochodendron aralioides HOM05D005088 ORTHO05D006914 3.2e-46 189.5 141 65.2
Cre06.g264500 Chlamydomonas reinhardtii HOM05D005088 ORTHO05D006914 5.5e-46 188.7 168 56.5
AUR62029179 Chenopodium quinoa HOM05D005088 ORTHO05D006914 4.8e-42 175.6 122 67.2
MCO13G391 Micromonas commoda HOM05D005088 ORTHO05D006914 4.8e-42 175.6 159 50.9
SMO347G0658 Selaginella moellendorffii HOM05D005088 ORTHO05D006914 1.1e-38 164.5 170 50.6
SGA_v2.0_scaffold18G08253 Striga asiatica HOM05D005088 ORTHO05D006914 2.2e-34 150.2 89 77.5
CDE09G0918 Ceratophyllum demersum HOM05D005088 ORTHO05D006914 5.9e-32 142.1 89 69.7
DCAR_001396 Daucus carota HOM05D005088 ORTHO05D006914 1.6e-29 134.0 101 60.4
MD09G1021200 Malus domestica HOM05D005088 ORTHO05D006914 7.9e-29 131.7 116 56.0
BolC4t25202H Brassica oleracea HOM05D005088 ORTHO05D017652 4.4e-27 125.9 193 44.0
C04p35970 Brassica napus HOM05D005088 ORTHO05D017652 3.7e-26 122.9 169 46.7
BcaC02g09844 Brassica carinata HOM05D005088 ORTHO05D017652 8.2e-26 121.7 170 45.9
PRCOL_00000286 Prasinoderma coloniale HOM05D005088 ORTHO05D006914 1.8e-25 120.6 164 39.6
C09p52510 Brassica napus HOM05D005088 ORTHO05D017652 6.5e-23 112.1 61 96.7
BolC9t58117H Brassica oleracea HOM05D005088 ORTHO05D017652 4.2e-22 109.4 61 95.1
BolC2t09028H Brassica oleracea HOM05D005088 ORTHO05D017652 8.8e-20 101.7 61 90.2
C05p10570 Brassica napus HOM05D005088 ORTHO05D017652 2.0e-19 100.5 61 90.2
Sed0009105 Sechium edule HOM05D005088 ORTHO05D006914 3.3e-19 99.8 153 41.2
C06p46790 Brassica napus HOM05D005088 ORTHO05D017652 1.3e-18 97.8 52 96.2
Oeu060752.1 Olea europaea HOM05D005088 ORTHO05D006914 1.3e-18 97.8 137 43.8
Manes.17G110201 Manihot esculenta HOM05D005088 ORTHO05D006914 2.0e-16 90.5 48 85.4
SpUn0056_0040 Schrenkiella parvula HOM05D005088 ORTHO05D017652 2.2e-15 87.0 58 74.1
Cc02_g24380 Coffea canephora HOM05D005088 ORTHO05D006914 4.2e-06 56.2 57 45.6
Sc09g0007140 Simmondsia chinensis HOM05D005088 ORTHO05D389638 4.2e-06 56.2 44 61.4


User provided reference genes

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