Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung07304 Brassica carinata HOM05D003481 ORTHO05D004001 2.2e-88 328.9 171 100.0
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 1.2e-86 323.2 167 100.0
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 1.2e-81 306.6 167 95.2
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 7.7e-81 303.9 167 94.6
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 5.0e-80 301.2 167 93.4
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 1.1e-74 283.5 168 89.3
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 2.4e-74 282.3 168 88.7
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 3.5e-73 278.5 169 90.5
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 3.5e-73 278.5 169 90.5
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 5.0e-72 274.6 169 88.8
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 6.6e-72 274.2 169 89.3
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 6.6e-72 274.2 169 89.3
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 2.1e-70 269.2 169 87.6
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 3.1e-69 265.4 168 85.7
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 8.9e-69 263.8 168 85.7
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 1.4e-66 256.5 171 83.0
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 2.4e-66 255.8 169 83.4
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 9.2e-66 253.8 170 82.9
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 1.6e-65 253.1 170 82.4
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 8.3e-59 230.7 160 78.8
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 1.9e-55 219.5 170 74.1
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 1.2e-41 173.7 174 58.6
Manes.03G070216 Manihot esculenta HOM05D003481 ORTHO05D004001 2.1e-41 172.9 169 59.8
Lj1A1155T51 Lonicera japonica HOM05D003481 ORTHO05D004001 3.9e-40 168.7 167 58.7
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 1.1e-39 167.2 169 59.8
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 1.3e-38 163.7 167 58.1
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 2.8e-38 162.5 167 58.1
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 2.4e-37 159.5 161 56.5
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 6.9e-37 157.9 172 57.0
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 7.6e-36 154.5 147 61.2
Actinidia29310 Actinidia chinensis HOM05D003481 ORTHO05D004001 1.7e-35 153.3 180 54.4
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 1.7e-35 153.3 186 55.4
Cpa.g.sc192.16 Carica papaya HOM05D003481 ORTHO05D004001 2.2e-35 152.9 168 59.5
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 2.2e-35 152.9 170 56.5
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 4.9e-35 151.8 167 55.7
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 8.4e-35 151.0 179 54.7
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 1.1e-34 150.6 136 61.8
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 1.9e-34 149.8 167 54.5
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 5.4e-34 148.3 167 56.3
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 1.2e-33 147.1 167 55.7
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 1.6e-33 146.7 167 53.9
TAR624G0988 Trochodendron aralioides HOM05D003481 ORTHO05D004001 1.6e-33 146.7 151 56.3
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 6.0e-33 144.8 146 60.3
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 1.7e-32 143.3 167 55.7
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 6.6e-32 141.4 168 56.0
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 6.6e-32 141.4 167 52.7
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 1.5e-31 140.2 167 54.5
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 2.5e-31 139.4 151 51.7
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 2.5e-31 139.4 171 50.3
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 3.3e-31 139.0 179 50.3
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 5.6e-31 138.3 177 53.7
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 7.3e-31 137.9 171 52.0
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 1.3e-30 137.1 167 53.9
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 1.6e-30 136.7 138 57.2
Oeu051246.1 Olea europaea HOM05D003481 ORTHO05D004001 2.1e-30 136.3 172 52.3
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 2.8e-30 136.0 193 47.7
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 4.8e-30 135.2 167 52.7
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 4.8e-30 135.2 167 52.7
CSS0036853 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 6.2e-30 134.8 139 58.3
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 8.1e-30 134.4 154 55.2
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 8.1e-30 134.4 159 51.6
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 1.1e-29 134.0 167 52.7
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 1.8e-29 133.3 141 53.9
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 1.8e-29 133.3 177 52.5
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 4.0e-29 132.1 170 48.2
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 1.5e-28 130.2 152 52.6
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 1.5e-28 130.2 160 52.5
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 9.9e-28 127.5 174 46.6
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 9.9e-28 127.5 189 48.1
arahy.Tifrunner.gnm1.ann1.R9RUHP Arachis hypogaea HOM05D003481 ORTHO05D004001 9.9e-28 127.5 189 48.1
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 9.9e-28 127.5 157 52.9
Solyc02g030100.4 Solanum lycopersicum HOM05D003481 ORTHO05D004001 1.7e-27 126.7 141 53.2
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 2.2e-27 126.3 157 51.0
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 3.8e-27 125.6 179 47.5
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 3.8e-27 125.6 170 51.8
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 3.8e-27 125.6 174 48.9
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 4.9e-27 125.2 147 51.7
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 4.9e-27 125.2 168 48.8
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 6.4e-27 124.8 189 46.6
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 6.4e-27 124.8 188 44.1
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 8.4e-27 124.4 173 48.0
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 1.1e-26 124.0 176 48.3
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 1.1e-26 124.0 174 47.7
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 1.4e-26 123.6 141 52.5
SEGI_08137 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 2.4e-26 122.9 167 46.7
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 3.2e-26 122.5 158 48.7
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 7.1e-26 121.3 175 45.1
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 7.1e-26 121.3 171 49.1
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 7.1e-26 121.3 153 49.0
Nitab4.5_0010415g0040 Nicotiana tabacum HOM05D003481 ORTHO05D004001 9.3e-26 120.9 174 45.4
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 1.6e-25 120.2 160 46.9
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 2.7e-25 119.4 128 51.6
Nitab4.5_0001298g0050 Nicotiana tabacum HOM05D003481 ORTHO05D004001 2.7e-25 119.4 142 52.8
ATR1132G122 Amborella trichopoda HOM05D003481 ORTHO05D004001 4.6e-25 118.6 198 42.4
Peaxi162Scf00267g00085 Petunia axillaris HOM05D003481 ORTHO05D004001 3.9e-24 115.5 158 47.5
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 1.5e-23 113.6 128 50.8
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 3.3e-23 112.5 168 45.8
Nitab4.5_0000378g0090 Nicotiana tabacum HOM05D003481 ORTHO05D004001 2.1e-22 109.8 132 47.7
Psat0s4071g0040 Pisum sativum HOM05D003481 ORTHO05D004001 2.1e-22 109.8 167 44.3
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 2.1e-22 109.8 93 64.5
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 2.1e-22 109.8 93 64.5
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 2.8e-22 109.4 154 45.5
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 4.8e-22 108.6 167 44.9
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 1.4e-21 107.1 169 46.2
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 4.0e-21 105.5 98 57.1
FAN18G3112 Fragaria x ananassa HOM05D003481 ORTHO05D004001 9.0e-21 104.4 92 58.7
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 9.0e-21 104.4 172 43.6
FvH4_5g17630 Fragaria vesca HOM05D003481 ORTHO05D004001 1.2e-20 104.0 92 58.7
FAN27G0233 Fragaria x ananassa HOM05D003481 ORTHO05D004001 2.0e-20 103.2 140 47.1
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 2.0e-20 103.2 158 43.0
FAN10G3643 Fragaria x ananassa HOM05D003481 ORTHO05D004001 2.6e-20 102.8 94 58.5
FvH4_4g15480 Fragaria vesca HOM05D003481 ORTHO05D004001 3.4e-20 102.4 91 58.2
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 3.4e-20 102.4 91 58.2
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 4.5e-20 102.1 171 45.6
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 5.8e-20 101.7 178 39.3
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 5.8e-20 101.7 167 43.1
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.7e-19 100.1 91 57.1
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 1.7e-19 100.1 142 47.2
SHI31592 Sapria himalayana HOM05D003481 ORTHO05D004001 2.2e-19 99.8 167 43.7
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 2.9e-19 99.4 90 57.8
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 1.1e-18 97.4 167 43.1
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 1.4e-18 97.1 173 38.2
Haze_05983 Corylus avellana HOM05D003481 ORTHO05D004001 2.5e-18 96.3 168 42.9
SMO137G0352 Selaginella moellendorffii HOM05D003481 ORTHO05D004001 7.1e-18 94.7 133 45.9
FvH4_4g15181 Fragaria vesca HOM05D003481 ORTHO05D004001 9.3e-18 94.4 91 54.9
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 6.0e-17 91.7 159 39.6
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 1.3e-16 90.5 159 39.6
FAN11G1212 Fragaria x ananassa HOM05D003481 ORTHO05D004001 3.9e-16 89.0 92 54.3
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 5.7e-15 85.1 170 38.8
Os04g0212200 Oryza sativa ssp. japonica HOM05D003481 ORTHO05D004001 1.3e-14 84.0 78 53.8
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 3.7e-14 82.4 147 39.5
CBR_g56099 Chara braunii HOM05D003481 ORTHO05D004001 1.2e-09 67.4 214 28.0
Sabra16G0301200 Salix brachista HOM05D003481 ORTHO05D004001 4.6e-09 65.5 95 43.2
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 5.1e-08 62.0 37 73.0
THA.LOC104812895 Tarenaya hassleriana HOM05D000153 ORTHO05D002648 8.7e-08 61.2 47 70.2


User provided reference genes

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