Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06950 Brassica carinata HOM05D004755 ORTHO05D006137 1.2e-225 786.2 399 100.0
BolC5t33386H Brassica oleracea HOM05D004755 ORTHO05D006137 1.6e-225 785.8 398 100.0
C05p46570 Brassica napus HOM05D004755 ORTHO05D006137 3.5e-225 784.6 399 99.7
BraA05t21911Z Brassica rapa HOM05D004755 ORTHO05D006137 4.4e-220 767.7 399 97.7
A05p30690 Brassica napus HOM05D004755 ORTHO05D006137 1.3e-219 766.1 399 97.2
BcaB06g25940 Brassica carinata HOM05D004755 ORTHO05D006137 5.6e-215 750.7 399 95.0
Thhalv10020129m.g Eutrema salsugineum HOM05D004755 ORTHO05D006137 3.0e-208 728.4 399 92.0
A03p40880 Brassica napus HOM05D004755 ORTHO05D006137 3.9e-208 728.0 399 91.5
BraA03t13246Z Brassica rapa HOM05D004755 ORTHO05D006137 3.9e-208 728.0 399 91.5
Sp3g16960 Schrenkiella parvula HOM05D004755 ORTHO05D006137 8.6e-208 726.9 399 91.7
AL3G32250 Arabidopsis lyrata HOM05D004755 ORTHO05D006137 4.3e-207 724.5 397 91.7
AT3G18860 Arabidopsis thaliana HOM05D004755 ORTHO05D006137 9.6e-207 723.4 397 91.9
BolC3t17278H Brassica oleracea HOM05D004755 ORTHO05D006137 7.6e-204 713.8 399 89.7
Carub.0003s1870 Capsella rubella HOM05D004755 ORTHO05D006137 1.3e-203 713.0 397 90.7
CARHR094310 Cardamine hirsuta HOM05D004755 ORTHO05D006137 1.3e-200 703.0 398 89.9
BcaC01g03670 Brassica carinata HOM05D004755 ORTHO05D006137 6.6e-200 700.7 399 88.7
C03p49850 Brassica napus HOM05D004755 ORTHO05D006137 2.1e-198 695.7 443 81.0
Aa31LG8G5700 Aethionema arabicum HOM05D004755 ORTHO05D006137 5.8e-196 687.6 397 86.4
THA.LOC104798811 Tarenaya hassleriana HOM05D004755 ORTHO05D006137 2.7e-185 652.1 397 82.4
Atru.chr5.2935 Acer truncatum HOM05D004755 ORTHO05D006137 4.1e-165 585.1 397 71.5
COL.COLO4_32463 Corchorus olitorius HOM05D004755 ORTHO05D006137 6.9e-165 584.3 397 71.5
Gohir.A04G117600 Gossypium hirsutum HOM05D004755 ORTHO05D006137 3.4e-164 582.0 397 71.0
Gorai.012G146700 Gossypium raimondii HOM05D004755 ORTHO05D006137 2.2e-163 579.3 397 70.8
Gohir.D04G159300 Gossypium hirsutum HOM05D004755 ORTHO05D006137 3.8e-163 578.6 397 70.8
Ciclev10027868m.g Citrus clementina HOM05D004755 ORTHO05D006137 5.0e-163 578.2 397 70.3
Cfa004975 Carpinus fangiana HOM05D004755 ORTHO05D006137 4.6e-161 571.6 398 69.3
Duzib132G0528 Durio zibethinus HOM05D004755 ORTHO05D006137 3.0e-160 568.9 397 70.0
Thecc.02G121800 Theobroma cacao HOM05D004755 ORTHO05D006137 3.0e-160 568.9 397 70.5
Potri.009G112184 Populus trichocarpa HOM05D004755 ORTHO05D006137 8.8e-160 567.4 397 68.8
Potri.T125104 Populus trichocarpa HOM05D004755 ORTHO05D006137 8.8e-160 567.4 397 68.5
Cpa.g.sc62.108 Carica papaya HOM05D004755 ORTHO05D006137 7.4e-159 564.3 420 66.7
Prupe.8G104600 Prunus persica HOM05D004755 ORTHO05D006137 7.4e-159 564.3 397 69.3
Sabra09G0085600 Salix brachista HOM05D004755 ORTHO05D006137 7.4e-159 564.3 397 68.0
MBI16_g13149_MAGBIO Magnolia biondii HOM05D004755 ORTHO05D006137 2.8e-158 562.4 395 69.6
RcHm_v2.0_Chr6g0262551 Rosa chinensis HOM05D004755 ORTHO05D006137 1.1e-157 560.5 397 68.5
Actinidia00497 Actinidia chinensis HOM05D004755 ORTHO05D006137 1.4e-157 560.1 397 66.8
Potri.004G150700 Populus trichocarpa HOM05D004755 ORTHO05D006137 1.4e-157 560.1 397 67.8
CiPaw.05G060900 Carya illinoinensis HOM05D004755 ORTHO05D006137 1.8e-157 559.7 397 67.5
QL11p042321 Quercus lobata HOM05D004755 ORTHO05D006137 1.8e-157 559.7 397 68.0
PGR142G0564 Punica granatum HOM05D004755 ORTHO05D006137 4.1e-157 558.5 397 68.0
MD10G1082200 Malus domestica HOM05D004755 ORTHO05D006137 5.3e-157 558.1 396 67.7
CSS0003833 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 2.6e-156 555.8 397 67.8
CSS0019785 Camellia sinensis var. sinensis HOM05D004755 ORTHO05D006137 2.6e-156 555.8 397 67.8
Manes.17G099000 Manihot esculenta HOM05D004755 ORTHO05D006137 5.9e-156 554.7 397 67.0
Glyma.12G045800 Glycine max HOM05D004755 ORTHO05D006137 1.0e-155 553.9 397 67.8
Hund06220 Selenicereus undatus HOM05D004755 ORTHO05D006137 2.9e-155 552.4 399 66.9
FvH4_2g08030 Fragaria vesca HOM05D004755 ORTHO05D006137 1.9e-154 549.7 397 67.3
Lj3g0013592 Lotus japonicus HOM05D004755 ORTHO05D006137 4.2e-154 548.5 396 66.9
Nn5g29490 Nelumbo nucifera HOM05D004755 ORTHO05D006137 1.2e-153 547.0 396 66.4
DCAR_022097 Daucus carota HOM05D004755 ORTHO05D006137 2.1e-153 546.2 397 66.8
Lj5A201G28 Lonicera japonica HOM05D004755 ORTHO05D006137 2.7e-153 545.8 397 66.2
Sabra04G0100200 Salix brachista HOM05D004755 ORTHO05D006137 2.7e-153 545.8 392 67.1
Eucgr.I01243 Eucalyptus grandis HOM05D004755 ORTHO05D006137 3.6e-153 545.4 393 66.2
Nitab4.5_0004287g0030 Nicotiana tabacum HOM05D004755 ORTHO05D006137 6.1e-153 544.7 397 65.5
AUR62016701 Chenopodium quinoa HOM05D004755 ORTHO05D006137 1.4e-152 543.5 400 67.8
FAN15G3513 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.4e-152 543.5 405 65.7
VMungo1127G1904 Vigna mungo HOM05D004755 ORTHO05D006137 1.8e-152 543.1 396 65.7
Glyma.11G120700 Glycine max HOM05D004755 ORTHO05D006137 3.9e-152 542.0 397 66.0
Phvul.011G047700 Phaseolus vulgaris HOM05D004755 ORTHO05D006137 5.1e-152 541.6 397 65.7
GSVIVG01031913001 Vitis vinifera HOM05D004755 ORTHO05D006137 8.8e-152 540.8 397 66.2
TWI75G0180 Tripterygium wilfordii HOM05D004755 ORTHO05D006137 1.1e-151 540.4 399 66.7
arahy.Tifrunner.gnm1.ann1.CRQ4KQ Arachis hypogaea HOM05D004755 ORTHO05D006137 2.0e-151 539.7 397 66.5
Haze_02419 Corylus avellana HOM05D004755 ORTHO05D006137 2.0e-151 539.7 396 68.2
arahy.Tifrunner.gnm1.ann1.A0G0F1 Arachis hypogaea HOM05D004755 ORTHO05D006137 1.7e-150 536.6 397 66.2
Sc18g0004710 Simmondsia chinensis HOM05D004755 ORTHO05D006137 2.8e-150 535.8 390 66.4
Lalb_Chr01g0002741 Lupinus albus HOM05D004755 ORTHO05D006137 3.7e-150 535.4 397 65.7
CAN.G322.107 Capsicum annuum HOM05D004755 ORTHO05D006137 6.3e-150 534.6 397 64.2
AUR62011360 Chenopodium quinoa HOM05D004755 ORTHO05D006137 6.3e-150 534.6 400 67.0
PSO170G5490 Papaver somniferum HOM05D004755 ORTHO05D006137 6.3e-150 534.6 393 67.7
Cc02_g17900 Coffea canephora HOM05D004755 ORTHO05D006137 8.2e-150 534.3 397 65.0
ECA240G4701 Erigeron canadensis HOM05D004755 ORTHO05D006137 3.1e-149 532.3 397 66.2
Psat7g185120 Pisum sativum HOM05D004755 ORTHO05D006137 3.1e-149 532.3 397 65.5
Migut.B00268 Erythranthe guttata HOM05D004755 ORTHO05D006137 4.1e-149 531.9 398 65.3
Peaxi162Scf00016g01034 Petunia axillaris HOM05D004755 ORTHO05D006137 4.1e-149 531.9 397 64.2
PSO700G0113 Papaver somniferum HOM05D004755 ORTHO05D006137 7.0e-149 531.2 393 67.4
FAN20G2502 Fragaria x ananassa HOM05D004755 ORTHO05D006137 9.1e-149 530.8 413 63.9
Lalb_Chr03g0025821 Lupinus albus HOM05D004755 ORTHO05D006137 1.2e-148 530.4 397 65.5
Medtr4g069090 Medicago truncatula HOM05D004755 ORTHO05D006137 4.5e-148 528.5 397 65.2
vmacro02143 Vaccinium macrocarpon HOM05D004755 ORTHO05D006137 4.5e-148 528.5 435 59.5
FAN24G1877 Fragaria x ananassa HOM05D004755 ORTHO05D006137 5.9e-148 528.1 422 62.8
Solyc01g109350.3 Solanum lycopersicum HOM05D004755 ORTHO05D006137 5.9e-148 528.1 397 63.7
Ah.01g006160 Amaranthus hybridus HOM05D004755 ORTHO05D006137 2.2e-147 526.2 396 64.6
Sopen01g051540 Solanum pennellii HOM05D004755 ORTHO05D006137 2.2e-147 526.2 397 63.7
Nitab4.5_0004280g0140 Nicotiana tabacum HOM05D004755 ORTHO05D006137 1.9e-146 523.1 386 64.2
EL10Ac9g21762 Beta vulgaris HOM05D004755 ORTHO05D006137 1.2e-145 520.4 397 64.7
Aqoxy5G01708 Aquilegia oxysepala HOM05D004755 ORTHO05D006137 2.7e-145 519.2 394 64.5
CsaV3_7G010210 Cucumis sativus L. HOM05D004755 ORTHO05D006137 8.2e-142 507.7 399 62.4
MELO3C018404.2 Cucumis melo HOM05D004755 ORTHO05D006137 5.3e-141 505.0 399 61.7
Sed0014712 Sechium edule HOM05D004755 ORTHO05D006137 5.3e-141 505.0 398 63.3
HPP92_001848 Vanilla planifolia HOM05D004755 ORTHO05D006137 2.0e-140 503.1 394 63.2
TAR628G0908 Trochodendron aralioides HOM05D004755 ORTHO05D006137 1.0e-136 490.7 357 66.9
HanXRQChr08g0216571 Helianthus annuus HOM05D004755 ORTHO05D006137 5.2e-136 488.4 362 66.0
Lsat_1_v5_gn_9_109321 Lactuca sativa HOM05D004755 ORTHO05D006137 7.5e-135 484.6 398 62.3
ClCG02G005310 Citrullus lanatus HOM05D004755 ORTHO05D006137 4.8e-134 481.9 399 60.4
Os07g0123700 Oryza sativa ssp. japonica HOM05D004755 ORTHO05D006137 1.8e-133 479.9 397 58.9
ATR0733G059 Amborella trichopoda HOM05D004755 ORTHO05D006137 2.0e-132 476.5 398 59.5
unitig_746.g26712 Utricularia gibba HOM05D004755 ORTHO05D006137 3.2e-130 469.2 397 60.2
Hma1.2p1_0066F.1_g036770 Hydrangea macrophylla HOM05D004755 ORTHO05D006137 2.0e-127 459.9 345 63.5
SalBow6G2421 Salvia bowleyana HOM05D004755 ORTHO05D006137 5.4e-125 451.8 422 56.9
Rhsim11G0173300 Rhododendron simsii HOM05D004755 ORTHO05D006137 2.5e-122 443.0 398 57.3
QL07p047567 Quercus lobata HOM05D004755 ORTHO05D006137 1.0e-120 437.6 387 58.4
SGA_v2.0_scaffold58G20570 Striga asiatica HOM05D004755 ORTHO05D006137 3.0e-120 436.0 435 53.6
Ca_20846_v3 Cicer arietinum L. HOM05D004755 ORTHO05D006137 1.4e-117 427.2 397 55.9
TPR.G28052 Trifolium pratense HOM05D004755 ORTHO05D006137 1.2e-113 414.1 308 63.6
Dinv23556 Davidia involucrata HOM05D004755 ORTHO05D006137 3.7e-110 402.5 284 63.4
Pp3c13_21390 Physcomitrium patens HOM05D004755 ORTHO05D006137 5.4e-109 398.7 407 48.9
Mapoly0131s0025 Marchantia polymorpha HOM05D004755 ORTHO05D006137 1.2e-105 387.5 402 47.5
QL11p041479 Quercus lobata HOM05D004755 ORTHO05D006137 6.4e-94 348.6 306 58.5
Oeu010560.1 Olea europaea HOM05D004755 ORTHO05D006137 1.9e-93 347.1 274 61.7
CBR_g24445 Chara braunii HOM05D004755 ORTHO05D006137 2.1e-89 333.6 394 44.7
SMO146G0209 Selaginella moellendorffii HOM05D004755 ORTHO05D006137 5.4e-85 318.9 402 44.5
AagrBONN_evm.TU.Sc2ySwM_368.721 Anthoceros agrestis HOM05D004755 ORTHO05D006137 6.0e-76 288.9 298 47.3
Zm00001eb299230 Zea mays HOM05D004755 ORTHO05D006137 2.5e-58 230.3 164 67.7
Oeu010556.1 Olea europaea HOM05D004755 ORTHO05D006137 2.9e-46 190.3 127 68.5
QL11p041571 Quercus lobata HOM05D005713 ORTHO05D007751 2.8e-41 173.7 109 74.3
Lsat_1_v5_gn_9_93780 Lactuca sativa HOM05D004755 ORTHO05D006137 4.5e-39 166.4 103 76.7
SHI05427 Sapria himalayana HOM05D004755 ORTHO05D006137 1.0e-38 165.2 158 52.5
FAN02G3646 Fragaria x ananassa HOM05D004755 ORTHO05D006137 1.3e-38 164.9 102 71.6
Lsat_1_v5_gn_3_56800 Lactuca sativa HOM05D004755 ORTHO05D006137 1.7e-38 164.5 137 62.0
MCO13G192 Micromonas commoda HOM05D004755 ORTHO05D006137 1.0e-35 155.2 430 29.8
Cfa023312 Carpinus fangiana HOM05D004755 ORTHO05D006137 1.2e-31 141.7 413 26.6
Thecc.09G060700 Theobroma cacao HOM05D004755 ORTHO05D006137 2.6e-31 140.6 102 73.5
PRCOL_00000489 Prasinoderma coloniale HOM05D004755 ORTHO05D006137 1.5e-29 134.8 387 30.5
QL11p041511 Quercus lobata HOM05D004755 ORTHO05D006137 1.7e-25 121.3 89 73.0
QL11p041806 Quercus lobata HOM05D004755 ORTHO05D006137 1.7e-25 121.3 88 73.9
TPR.G18928 Trifolium pratense HOM05D004755 ORTHO05D006137 1.7e-25 121.3 92 69.6
Glyma.01G127800 Glycine max HOM05D004755 ORTHO05D006137 4.8e-25 119.8 89 69.7
Lsat_1_v5_gn_3_67820 Lactuca sativa HOM05D001195 ORTHO05D001138 4.8e-25 119.8 82 68.3
QL11p041742 Quercus lobata HOM05D004755 ORTHO05D006137 7.0e-24 115.9 89 69.7
SEGI_36377 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 1.9e-21 107.8 90 56.7
Ca_08127_v3 Cicer arietinum L. HOM05D009313 ORTHO05D011011 5.5e-21 106.3 85 58.8
Cre09.g389912 Chlamydomonas reinhardtii HOM05D004755 ORTHO05D006137 3.0e-19 100.5 386 28.2
SEGI_11122 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 1.5e-18 98.2 89 59.6
PGSC0003DMG400025184 Solanum tuberosum HOM05D004755 ORTHO05D006137 7.0e-16 89.4 67 67.2
SEGI_27412 Sequoiadendron giganteum HOM05D004755 ORTHO05D006137 4.2e-13 80.1 50 72.0
QL11p042075 Quercus lobata HOM05D004755 ORTHO05D006137 3.7e-09 67.0 51 62.7
Haze_01851 Corylus avellana HOM05D004755 ORTHO05D006137 6.3e-09 66.2 43 76.7


User provided reference genes

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