Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06832 Brassica carinata HOM05D003507 ORTHO05D004324 2.9e-168 595.1 299 100.0
A05p38780 Brassica napus HOM05D003507 ORTHO05D004324 1.4e-162 576.2 299 96.7
BraA05t22670Z Brassica rapa HOM05D003507 ORTHO05D004324 1.4e-162 576.2 299 96.7
C05p57790 Brassica napus HOM05D003507 ORTHO05D004324 2.7e-161 572.0 299 96.0
BcaC05g29472 Brassica carinata HOM05D003507 ORTHO05D004324 3.5e-161 571.6 299 96.0
A01p41890 Brassica napus HOM05D003507 ORTHO05D004324 3.5e-161 571.6 299 95.3
BolC5t34436H Brassica oleracea HOM05D003507 ORTHO05D004324 3.5e-161 571.6 299 96.0
BraA01t04259Z Brassica rapa HOM05D003507 ORTHO05D004324 3.5e-161 571.6 299 95.3
AL3G21700 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 4.5e-161 571.2 299 95.3
AL491U10020 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 4.5e-161 571.2 299 95.3
BcaB04g21215 Brassica carinata HOM05D003507 ORTHO05D004324 4.5e-161 571.2 299 95.3
CARHR084850 Cardamine hirsuta HOM05D003507 ORTHO05D004324 1.7e-160 569.3 299 95.0
AT3G10370 Arabidopsis thaliana HOM05D003507 ORTHO05D004324 3.8e-160 568.2 299 94.6
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 5.0e-160 567.8 299 94.3
BolC1t05405H Brassica oleracea HOM05D003507 ORTHO05D004324 5.0e-160 567.8 299 94.3
Carub.0003s0955 Capsella rubella HOM05D003507 ORTHO05D004324 8.6e-160 567.0 299 95.0
Sp3g08640 Schrenkiella parvula HOM05D003507 ORTHO05D004324 3.3e-159 565.1 299 95.0
Thhalv10020293m.g Eutrema salsugineum HOM05D003507 ORTHO05D004324 1.6e-158 562.8 299 94.6
Aa31LG1G21080 Aethionema arabicum HOM05D003507 ORTHO05D004324 2.3e-149 532.3 297 88.2
A07p45220 Brassica napus HOM05D003507 ORTHO05D004324 9.8e-148 526.9 292 89.0
C06p54060 Brassica napus HOM05D003507 ORTHO05D004324 6.4e-147 524.2 290 89.3
BraA07t32025Z Brassica rapa HOM05D003507 ORTHO05D004324 3.2e-146 521.9 290 89.0
BolC6t40419H Brassica oleracea HOM05D003507 ORTHO05D004324 5.4e-146 521.2 290 89.0
VMungo0720G1021 Vigna mungo HOM05D003507 ORTHO05D004324 6.6e-144 514.2 299 83.9
CANSAT56G3424 Cannabis sativa HOM05D003507 ORTHO05D004324 3.6e-142 508.4 297 83.5
CAN.G1121.6 Capsicum annuum HOM05D003507 ORTHO05D004324 3.6e-142 508.4 297 83.5
Migut.F01958 Erythranthe guttata HOM05D003507 ORTHO05D004324 4.7e-142 508.1 299 82.9
Sc20g0001600 Simmondsia chinensis HOM05D003507 ORTHO05D004324 4.7e-142 508.1 299 82.9
Haze_16857 Corylus avellana HOM05D003507 ORTHO05D004324 8.1e-142 507.3 299 82.9
Psat6g130440 Pisum sativum HOM05D003507 ORTHO05D004324 1.4e-141 506.5 299 82.3
Phvul.007G245200 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 1.8e-141 506.1 299 82.6
Cfa001677 Carpinus fangiana HOM05D003507 ORTHO05D004324 2.3e-141 505.8 299 82.9
Glyma.02G165500 Glycine max HOM05D003507 ORTHO05D004324 3.1e-141 505.4 299 81.6
Ca_11760_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 5.8e-140 501.1 299 81.6
ATR0219G019 Amborella trichopoda HOM05D003507 ORTHO05D004324 7.5e-140 500.7 297 80.5
arahy.Tifrunner.gnm1.ann1.X5QL3X Arachis hypogaea HOM05D003507 ORTHO05D004324 7.5e-140 500.7 306 80.7
MELO3C019820.2 Cucumis melo HOM05D003507 ORTHO05D004324 7.5e-140 500.7 299 82.6
SalBow4G0138 Salvia bowleyana HOM05D003507 ORTHO05D004324 7.5e-140 500.7 299 81.9
MBI18_g28045_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 9.9e-140 500.4 297 81.1
Nn2g13785 Nelumbo nucifera HOM05D003507 ORTHO05D004324 9.9e-140 500.4 297 82.2
Rhsim03G0116200 Rhododendron simsii HOM05D003507 ORTHO05D004324 1.7e-139 499.6 299 81.6
TPR.G7608 Trifolium pratense HOM05D003507 ORTHO05D004324 1.7e-139 499.6 299 80.6
Medtr1g050720 Medicago truncatula HOM05D003507 ORTHO05D004324 2.2e-139 499.2 299 79.9
CsaV3_6G036660 Cucumis sativus L. HOM05D003507 ORTHO05D004324 3.7e-139 498.4 299 81.9
Sed0010237 Sechium edule HOM05D003507 ORTHO05D004324 3.7e-139 498.4 299 82.6
ClCG08G007670 Citrullus lanatus HOM05D003507 ORTHO05D004324 4.9e-139 498.0 299 82.3
PGR142G1627 Punica granatum HOM05D003507 ORTHO05D004324 4.9e-139 498.0 299 80.9
Gorai.012G005900 Gossypium raimondii HOM05D003507 ORTHO05D004324 1.4e-138 496.5 299 81.6
Oeu013840.1 Olea europaea HOM05D003507 ORTHO05D004324 1.9e-138 496.1 297 81.5
Manes.10G050100 Manihot esculenta HOM05D003507 ORTHO05D004324 3.2e-138 495.4 297 81.5
arahy.Tifrunner.gnm1.ann1.8GLB3P Arachis hypogaea HOM05D003507 ORTHO05D004324 5.4e-138 494.6 299 81.3
arahy.Tifrunner.gnm1.ann1.TAZB16 Arachis hypogaea HOM05D003507 ORTHO05D004324 5.4e-138 494.6 299 81.3
Lj5g0027490 Lotus japonicus HOM05D003507 ORTHO05D004324 7.1e-138 494.2 299 82.3
Sed0023455 Sechium edule HOM05D003507 ORTHO05D004324 9.2e-138 493.8 299 81.3
CiPaw.02G172300 Carya illinoinensis HOM05D003507 ORTHO05D004324 1.2e-137 493.4 297 81.8
COL.COLO4_17137 Corchorus olitorius HOM05D003507 ORTHO05D004324 6.0e-137 491.1 301 81.7
Actinidia18606 Actinidia chinensis HOM05D003507 ORTHO05D004324 7.8e-137 490.7 299 80.3
Dinv36393 Davidia involucrata HOM05D003507 ORTHO05D004324 7.8e-137 490.7 299 80.3
Glyma.20G183100 Glycine max HOM05D003507 ORTHO05D004324 7.8e-137 490.7 299 80.3
MD07G1170100 Malus domestica HOM05D003507 ORTHO05D004324 7.8e-137 490.7 297 81.1
RcHm_v2.0_Chr1g0362611 Rosa chinensis HOM05D003507 ORTHO05D004324 7.8e-137 490.7 299 80.9
Phvul.007G099000 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 1.3e-136 490.0 299 80.3
Nn6g35287 Nelumbo nucifera HOM05D003507 ORTHO05D004324 5.1e-136 488.0 297 79.1
Lalb_Chr02g0152061 Lupinus albus HOM05D003507 ORTHO05D004324 6.6e-136 487.6 299 79.3
THA.LOC104826896 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 6.6e-136 487.6 297 81.8
MSTRG.27484 Avicennia marina HOM05D003507 ORTHO05D004324 1.9e-135 486.1 299 78.9
vmacro07121 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 1.9e-135 486.1 309 77.3
TWI63G0759 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 2.5e-135 485.7 301 80.7
Glyma.10G207700 Glycine max HOM05D003507 ORTHO05D004324 4.3e-135 485.0 299 79.6
Prupe.2G209000 Prunus persica HOM05D003507 ORTHO05D004324 5.6e-135 484.6 297 80.1
MSTRG.9152 Avicennia marina HOM05D003507 ORTHO05D004324 1.2e-134 483.4 299 78.3
FvH4_7g18820 Fragaria vesca HOM05D003507 ORTHO05D004324 2.8e-134 482.3 298 78.9
FAN06G1568 Fragaria x ananassa HOM05D003507 ORTHO05D004324 2.8e-134 482.3 298 78.9
FAN06G2975 Fragaria x ananassa HOM05D003507 ORTHO05D004324 2.8e-134 482.3 298 78.9
FAN10G1468 Fragaria x ananassa HOM05D003507 ORTHO05D004324 3.6e-134 481.9 298 78.9
Nitab4.5_0001659g0110 Nicotiana tabacum HOM05D003507 ORTHO05D004324 4.7e-134 481.5 288 80.9
FAN01G0276 Fragaria x ananassa HOM05D003507 ORTHO05D004324 6.2e-134 481.1 298 78.9
Rhsim09G0148300 Rhododendron simsii HOM05D003507 ORTHO05D004324 6.2e-134 481.1 299 78.9
unitig_88.g27816 Utricularia gibba HOM05D003507 ORTHO05D004324 8.1e-134 480.7 297 78.1
FAN10G2698 Fragaria x ananassa HOM05D003507 ORTHO05D004324 1.4e-133 479.9 298 78.5
TWI38G0486 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 1.8e-133 479.6 297 80.1
AUR62036906 Chenopodium quinoa HOM05D003507 ORTHO05D004324 3.1e-133 478.8 299 78.9
AUR62013829 Chenopodium quinoa HOM05D003507 ORTHO05D004324 4.0e-133 478.4 299 78.6
TPR.G38613 Trifolium pratense HOM05D003507 ORTHO05D004324 6.8e-133 477.6 299 77.9
THA.LOC104816425 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 1.2e-132 476.9 297 79.1
ECA233G4141 Erigeron canadensis HOM05D003507 ORTHO05D004324 3.4e-132 475.3 299 77.6
Atru.chr12.838 Acer truncatum HOM05D003507 ORTHO05D008357 7.6e-132 474.2 297 78.8
DCAR_019087 Daucus carota HOM05D003507 ORTHO05D004324 7.6e-132 474.2 299 78.3
Mapoly0025s0008 Marchantia polymorpha HOM05D003507 ORTHO05D004324 2.2e-131 472.6 297 78.8
SGA_v2.0_scaffold62G21389 Striga asiatica HOM05D003507 ORTHO05D004324 3.8e-131 471.9 297 78.5
Zm00001eb419210 Zea mays HOM05D003507 ORTHO05D004324 4.9e-131 471.5 298 75.8
MD07G1170200 Malus domestica HOM05D003507 ORTHO05D004324 6.4e-131 471.1 288 80.6
Lsat_1_v5_gn_8_20780 Lactuca sativa HOM05D003507 ORTHO05D004324 1.1e-130 470.3 297 76.8
FAN03G2323 Fragaria x ananassa HOM05D003507 ORTHO05D004324 2.4e-130 469.2 290 79.3
Sc09g0006070 Simmondsia chinensis HOM05D003507 ORTHO05D004324 3.2e-130 468.8 299 76.6
PSO210G6851 Papaver somniferum HOM05D003507 ORTHO05D004324 7.1e-130 467.6 297 77.8
Ah.11g040810 Amaranthus hybridus HOM05D003507 ORTHO05D004324 1.6e-129 466.5 299 77.9
GSVIVG01016222001 Vitis vinifera HOM05D003507 ORTHO05D004324 6.0e-129 464.5 297 77.4
Gohir.A06G168100 Gossypium hirsutum HOM05D003507 ORTHO05D004324 2.3e-128 462.6 299 77.3
PSO210G4234 Papaver somniferum HOM05D003507 ORTHO05D004324 2.3e-128 462.6 297 76.8
Gohir.D06G175500 Gossypium hirsutum HOM05D003507 ORTHO05D004324 3.0e-128 462.2 299 77.3
RhsimUnG0185700 Rhododendron simsii HOM05D003507 ORTHO05D004324 3.9e-128 461.8 299 76.6
Gorai.010G205900 Gossypium raimondii HOM05D003507 ORTHO05D004324 6.6e-128 461.1 299 76.9
Manes.07G133156 Manihot esculenta HOM05D003507 ORTHO05D004324 6.6e-128 461.1 297 76.8
EL10Ac1g02015 Beta vulgaris HOM05D003507 ORTHO05D004324 1.1e-127 460.3 326 71.5
CSS0014006 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 1.9e-127 459.5 299 75.9
CSS0018584 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 1.9e-127 459.5 299 75.9
QL08p054391 Quercus lobata HOM05D003507 ORTHO05D004324 1.9e-127 459.5 297 76.8
SMO334G0124 Selaginella moellendorffii HOM05D003507 ORTHO05D004324 3.3e-127 458.8 298 76.2
QL08p054526 Quercus lobata HOM05D003507 ORTHO05D004324 5.6e-127 458.0 297 76.1
Gohir.D04G004700 Gossypium hirsutum HOM05D003507 ORTHO05D004324 1.6e-126 456.4 299 76.6
arahy.Tifrunner.gnm1.ann1.WAL6D9 Arachis hypogaea HOM05D003507 ORTHO05D004324 2.1e-126 456.1 418 59.3
Potri.010G226700 Populus trichocarpa HOM05D003507 ORTHO05D004324 2.1e-126 456.1 297 77.1
TAR623G1746 Trochodendron aralioides HOM05D003507 ORTHO05D004324 2.8e-126 455.7 297 75.4
Os04g0224900 Oryza sativa ssp. japonica HOM05D003507 ORTHO05D004324 3.6e-126 455.3 298 74.2
Gohir.A05G411300 Gossypium hirsutum HOM05D003507 ORTHO05D004324 4.7e-126 454.9 299 75.9
Psat6g180000 Pisum sativum HOM05D003507 ORTHO05D004324 4.7e-126 454.9 299 76.6
Thecc.10G083100 Theobroma cacao HOM05D003507 ORTHO05D004324 8.1e-126 454.1 299 75.9
Cc02_g10950 Coffea canephora HOM05D003507 ORTHO05D004324 1.4e-125 453.4 299 75.3
Duzib128G1288 Durio zibethinus HOM05D003507 ORTHO05D004324 5.2e-125 451.4 298 75.2
CiPaw.01G268800 Carya illinoinensis HOM05D003507 ORTHO05D004324 1.5e-124 449.9 299 73.6
Aqoxy1G01151 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 2.0e-124 449.5 297 75.1
Duzib114G0668 Durio zibethinus HOM05D003507 ORTHO05D004324 2.6e-124 449.1 299 74.6
Ca_10543_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 4.4e-124 448.4 299 74.9
MD01G1103300 Malus domestica HOM05D003507 ORTHO05D004324 7.6e-124 447.6 297 75.4
Sabra10G0175000 Salix brachista HOM05D003507 ORTHO05D004324 7.6e-124 447.6 297 75.4
SHI08893 Sapria himalayana HOM05D003507 ORTHO05D004324 2.9e-123 445.7 298 73.8
Pp3c4_15510 Physcomitrium patens HOM05D003507 ORTHO05D004324 1.4e-122 443.4 300 71.0
Eucgr.G02866 Eucalyptus grandis HOM05D003507 ORTHO05D004324 4.2e-122 441.8 299 73.6
Hund22747 Selenicereus undatus HOM05D003507 ORTHO05D004324 3.0e-120 435.6 297 72.1
VMungo0720G1977 Vigna mungo HOM05D003507 ORTHO05D004324 5.1e-120 434.9 299 73.2
ECA232G4763 Erigeron canadensis HOM05D003507 ORTHO05D004324 1.5e-119 433.3 299 72.9
vmacro04843 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 1.6e-118 429.9 314 71.0
HanXRQChr17g0564181 Helianthus annuus HOM05D003507 ORTHO05D004324 2.1e-118 429.5 299 73.2
HanXRQChr08g0218541 Helianthus annuus HOM05D003507 ORTHO05D004324 2.8e-118 429.1 299 70.9
HPP92_008484 Vanilla planifolia HOM05D003507 ORTHO05D004324 5.3e-117 424.9 297 70.7
Lsat_1_v5_gn_9_70220 Lactuca sativa HOM05D003507 ORTHO05D004324 3.2e-114 415.6 305 69.2
THA.LOC104824233 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 2.1e-113 412.9 287 71.1
Aqoxy1G02537 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 1.9e-111 406.4 287 69.0
MBI17_g03745_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 1.9e-111 406.4 294 67.3
PSO541G4906 Papaver somniferum HOM05D003507 ORTHO05D004324 3.7e-110 402.1 285 69.1
TAR627G0142 Trochodendron aralioides HOM05D003507 ORTHO05D004324 3.1e-109 399.1 287 69.0
CBR_g49884 Chara braunii HOM05D003507 ORTHO05D000048 4.5e-108 395.2 297 66.3
Lj2A20T45 Lonicera japonica HOM05D003507 ORTHO05D004324 3.8e-107 392.1 241 80.1
BcaNung06834 Brassica carinata HOM05D003507 ORTHO05D004324 3.4e-100 369.0 233 81.1
Oeu000789.2 Olea europaea HOM05D003507 ORTHO05D004324 6.9e-93 344.7 266 66.2
Dinv31230 Davidia involucrata HOM05D003507 ORTHO05D004324 1.2e-92 344.0 212 78.3
CDE02G2605 Ceratophyllum demersum HOM05D003507 ORTHO05D004324 3.6e-89 332.4 207 76.3
VMungo0251G1768 Vigna mungo HOM05D003507 ORTHO05D004324 7.9e-89 331.3 241 68.9
SEGI_18211 Sequoiadendron giganteum HOM05D003507 ORTHO05D004324 1.1e-85 320.9 244 66.4
ATR0680G388 Amborella trichopoda HOM05D003507 ORTHO05D004324 5.3e-85 318.5 231 68.0
AagrBONN_evm.TU.Sc2ySwM_117.1947 Anthoceros agrestis HOM05D003507 ORTHO05D004324 6.5e-83 311.6 199 74.4
Nitab4.5_0027540g0010 Nicotiana tabacum HOM05D003507 ORTHO05D004324 3.9e-80 302.4 184 77.7
CiPaw.14G115300 Carya illinoinensis HOM05D003507 ORTHO05D004324 2.6e-79 299.7 297 57.9
Cre13.g577450 Chlamydomonas reinhardtii HOM05D003507 ORTHO05D004324 7.2e-74 281.6 305 48.9
CBR_g56910 Chara braunii HOM05D003507 ORTHO05D004324 9.4e-66 254.6 310 46.1
MCO16G042 Micromonas commoda HOM05D003507 ORTHO05D004324 8.0e-65 251.5 290 46.6
Cfa022775 Carpinus fangiana HOM05D003507 ORTHO05D004324 1.1e-61 241.1 309 43.4
CSS0013740 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 1.5e-58 230.7 167 66.5
MBI17_g46352_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 7.2e-58 228.4 278 49.3
CSS0011029 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 1.4e-56 224.2 156 71.8
BcaNung06282 Brassica carinata HOM05D003507 ORTHO05D004324 3.4e-55 219.5 116 92.2
CSS0000572 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 2.8e-54 216.5 156 68.6
Haze_26728 Corylus avellana HOM05D003507 ORTHO05D004324 2.5e-50 203.4 248 44.8
CSS0034710 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 1.9e-34 150.6 156 51.9
Cpa.g.sc2869.1 Carica papaya HOM05D003507 ORTHO05D004324 1.6e-33 147.5 86 81.4
SMO361G0200 Selaginella moellendorffii HOM05D003507 ORTHO05D004324 1.2e-25 121.3 75 74.7
Nn2g13805 Nelumbo nucifera HOM05D003507 ORTHO05D004324 2.9e-22 110.2 73 78.1
Lj2C20G5 Lonicera japonica HOM05D003507 ORTHO05D004324 1.1e-21 108.2 61 83.6
Cpa.g.sc2869.2 Carica papaya HOM05D003507 ORTHO05D004324 2.4e-21 107.1 59 84.7
Nitab4.5_0001450g0180 Nicotiana tabacum HOM05D003507 ORTHO05D004324 3.2e-21 106.7 60 83.3
Peaxi162Scf00145g01313 Petunia axillaris HOM05D003507 ORTHO05D004324 3.2e-21 106.7 59 83.1
Solyc11g008380.3 Solanum lycopersicum HOM05D003507 ORTHO05D004324 3.2e-21 106.7 60 83.3
SEGI_22983 Sequoiadendron giganteum HOM05D003507 ORTHO05D004324 5.4e-21 105.9 60 80.0
Aqoxy1G02532 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 3.9e-19 99.8 59 78.0
Pp3s42_220 Physcomitrium patens HOM05D003206 ORTHO05D310700 4.4e-15 86.3 286 26.2
HPP92_008470 Vanilla planifolia HOM05D003507 ORTHO05D429279 3.2e-13 80.1 87 52.9


User provided reference genes

Program Settings