Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06712 Brassica carinata HOM05D002948 ORTHO05D003577 2.3e-81 305.4 151 100.0
BolC7t46502H Brassica oleracea HOM05D002948 ORTHO05D003577 9.7e-35 150.6 104 79.8
BcaNung07079 Brassica carinata HOM05D002948 ORTHO05D003577 3.7e-34 148.7 93 86.0
C07p60730 Brassica napus HOM05D002948 ORTHO05D003577 3.7e-34 148.7 104 78.8
BraA03t15385Z Brassica rapa HOM05D002948 ORTHO05D003577 5.5e-30 134.8 107 72.0
A03p63100 Brassica napus HOM05D002948 ORTHO05D003577 1.6e-29 133.3 107 71.0
AL7G16490 Arabidopsis lyrata HOM05D002948 ORTHO05D003577 3.2e-22 109.0 114 60.5
AT4G34710 Arabidopsis thaliana HOM05D002948 ORTHO05D003577 3.0e-20 102.4 117 58.1
Carub.0007s0558 Capsella rubella HOM05D002948 ORTHO05D003577 3.0e-20 102.4 123 56.9
Sp7g32490 Schrenkiella parvula HOM05D002948 ORTHO05D003577 1.1e-19 100.5 123 53.7
BcaB03g16368 Brassica carinata HOM05D002948 ORTHO05D003577 4.4e-19 98.6 111 55.9
Thhalv10024529m.g Eutrema salsugineum HOM05D002948 ORTHO05D003577 4.4e-19 98.6 125 52.8
Thhalv10022578m.g Eutrema salsugineum HOM05D002948 ORTHO05D003577 5.7e-19 98.2 114 55.3
Aa31LG8G13820 Aethionema arabicum HOM05D002948 ORTHO05D003577 7.4e-19 97.8 124 54.0
CARHR243010 Cardamine hirsuta HOM05D002948 ORTHO05D003577 2.2e-18 96.3 121 54.5
BcaC01g00879 Brassica carinata HOM05D002948 ORTHO05D003577 2.8e-18 95.9 107 57.0
C03p85520 Brassica napus HOM05D002948 ORTHO05D003577 2.8e-18 95.9 107 57.0
BraA08t33628Z Brassica rapa HOM05D002948 ORTHO05D003577 3.7e-18 95.5 105 57.1
Sp3g29770 Schrenkiella parvula HOM05D002948 ORTHO05D003577 3.7e-18 95.5 111 54.1
A08p16630 Brassica napus HOM05D002948 ORTHO05D003577 4.8e-18 95.1 107 55.1
A01p03790 Brassica napus HOM05D002948 ORTHO05D003577 6.3e-18 94.7 115 53.9
BraA01t00364Z Brassica rapa HOM05D002948 ORTHO05D003577 6.3e-18 94.7 115 53.9
BolC3t20839H Brassica oleracea HOM05D002948 ORTHO05D003577 8.2e-18 94.4 107 56.1
BcaB03g11816 Brassica carinata HOM05D002948 ORTHO05D003577 1.8e-17 93.2 109 56.9
Carub.0003s3028 Capsella rubella HOM05D002948 ORTHO05D003577 5.3e-17 91.7 111 55.9
BcaB03g15553 Brassica carinata HOM05D002948 ORTHO05D003577 7.0e-17 91.3 105 56.2
BcaNung05379 Brassica carinata HOM05D002948 ORTHO05D003577 9.1e-17 90.9 117 51.3
CARHR106720 Cardamine hirsuta HOM05D002948 ORTHO05D003577 3.5e-16 89.0 108 53.7
THA.LOC104807291 Tarenaya hassleriana HOM05D002948 ORTHO05D003577 3.5e-16 89.0 124 50.0
BcaNung05380 Brassica carinata HOM05D002948 ORTHO05D003577 4.5e-16 88.6 96 56.2
THA.LOC104804343 Tarenaya hassleriana HOM05D002948 ORTHO05D003577 7.7e-16 87.8 122 50.0
BcaNung00671 Brassica carinata HOM05D002948 ORTHO05D003577 1.7e-15 86.7 95 55.8
C01p04110 Brassica napus HOM05D002948 ORTHO05D003577 1.7e-15 86.7 95 55.8
A01p03800 Brassica napus HOM05D002948 ORTHO05D003577 2.9e-15 85.9 95 54.7
C01p04090 Brassica napus HOM05D002948 ORTHO05D003577 3.8e-15 85.5 115 50.4
BolC1t00399H Brassica oleracea HOM05D002948 ORTHO05D003577 3.8e-15 85.5 115 50.4
BraA01t00365Z Brassica rapa HOM05D002948 ORTHO05D003577 5.0e-15 85.1 95 54.7
Atru.chr5.3152 Acer truncatum HOM05D002948 ORTHO05D003577 8.5e-15 84.3 110 50.9
Atru.chr5.3166 Acer truncatum HOM05D002948 ORTHO05D003577 8.5e-15 84.3 110 50.9
AL3G52690 Arabidopsis lyrata HOM05D002948 ORTHO05D003577 1.1e-14 84.0 108 52.8
Lj1g0012396 Lotus japonicus HOM05D002948 ORTHO05D003577 1.1e-14 84.0 111 47.7
THA.LOC104820175 Tarenaya hassleriana HOM05D002948 ORTHO05D003577 1.9e-14 83.2 122 48.4
AT2G16500 Arabidopsis thaliana HOM05D002948 ORTHO05D003577 2.5e-14 82.8 110 55.5
Cpa.g.sc150.13 Carica papaya HOM05D002948 ORTHO05D003577 7.2e-14 81.3 57 70.2
Lalb_Chr03g0025331 Lupinus albus HOM05D002948 ORTHO05D003577 9.4e-14 80.9 104 51.0
Manes.11G081600 Manihot esculenta HOM05D002948 ORTHO05D003577 9.4e-14 80.9 95 51.6
COL.COLO4_00023 Corchorus olitorius HOM05D002948 ORTHO05D003577 1.2e-13 80.5 128 45.3
QL11p046480 Quercus lobata HOM05D002948 ORTHO05D003577 1.6e-13 80.1 123 46.3
Nitab4.5_0005266g0020 Nicotiana tabacum HOM05D002948 ORTHO05D003577 2.7e-13 79.3 88 53.4
FvH4_2g10570 Fragaria vesca HOM05D002948 ORTHO05D003577 4.7e-13 78.6 120 45.8
FAN24G2709 Fragaria x ananassa HOM05D002948 ORTHO05D003577 4.7e-13 78.6 120 45.8
Lj3g0025349 Lotus japonicus HOM05D002948 ORTHO05D003577 4.7e-13 78.6 115 47.8
PGR042G2860 Punica granatum HOM05D002948 ORTHO05D003577 4.7e-13 78.6 121 47.1
PGSC0003DMG400001662 Solanum tuberosum HOM05D002948 ORTHO05D003577 4.7e-13 78.6 92 53.3
Nitab4.5_0005932g0030 Nicotiana tabacum HOM05D002948 ORTHO05D003577 6.1e-13 78.2 88 53.4
Aqoxy5G01475 Aquilegia oxysepala HOM05D002948 ORTHO05D003577 8.0e-13 77.8 57 66.7
CAN.G170.106 Capsicum annuum HOM05D002948 ORTHO05D003577 8.0e-13 77.8 89 50.6
MD10G1062500 Malus domestica HOM05D002948 ORTHO05D003577 8.0e-13 77.8 124 46.8
Peaxi162Scf00016g00007 Petunia axillaris HOM05D002948 ORTHO05D003577 8.0e-13 77.8 57 66.7
Sopen01g052570 Solanum pennellii HOM05D002948 ORTHO05D003577 8.0e-13 77.8 92 53.3
TAR381G1534 Trochodendron aralioides HOM05D002948 ORTHO05D003577 8.0e-13 77.8 57 66.7
PSO170G0240 Papaver somniferum HOM05D002948 ORTHO05D003577 1.0e-12 77.4 84 52.4
PSO210G1300 Papaver somniferum HOM05D002948 ORTHO05D003577 1.0e-12 77.4 84 52.4
Potri.004G163300 Populus trichocarpa HOM05D002948 ORTHO05D003577 1.0e-12 77.4 57 64.9
Sabra04G0109600 Salix brachista HOM05D002948 ORTHO05D003577 1.0e-12 77.4 57 64.9
SalBow6G3895 Salvia bowleyana HOM05D002948 ORTHO05D003577 1.0e-12 77.4 116 44.8
Actinidia00576 Actinidia chinensis HOM05D002948 ORTHO05D003577 1.4e-12 77.0 125 46.4
CSS0024054 Camellia sinensis var. sinensis HOM05D002948 ORTHO05D003577 1.4e-12 77.0 57 68.4
RcHm_v2.0_Chr6g0268211 Rosa chinensis HOM05D002948 ORTHO05D003577 1.4e-12 77.0 129 45.0
arahy.Tifrunner.gnm1.ann1.YG2Q7Y Arachis hypogaea HOM05D002948 ORTHO05D003577 1.8e-12 76.6 57 64.9
CSS0006469 Camellia sinensis var. sinensis HOM05D002948 ORTHO05D003577 1.8e-12 76.6 123 44.7
CSS0040307 Camellia sinensis var. sinensis HOM05D002948 ORTHO05D003577 1.8e-12 76.6 123 44.7
CANSAT11G0625 Cannabis sativa HOM05D002948 ORTHO05D003577 1.8e-12 76.6 121 44.6
Prupe.8G083100 Prunus persica HOM05D002948 ORTHO05D003577 1.8e-12 76.6 122 48.4
BcaNung00669 Brassica carinata HOM05D002948 ORTHO05D003577 2.3e-12 76.3 58 67.2
Eucgr.G01735 Eucalyptus grandis HOM05D002948 ORTHO05D003577 2.3e-12 76.3 85 55.3
Duzib132G0750 Durio zibethinus HOM05D002948 ORTHO05D003577 3.0e-12 75.9 57 64.9
Gohir.A04G123600 Gossypium hirsutum HOM05D002948 ORTHO05D003577 3.0e-12 75.9 57 63.2
Nitab4.5_0001317g0070 Nicotiana tabacum HOM05D002948 ORTHO05D003577 3.0e-12 75.9 57 63.2
Dinv23451 Davidia involucrata HOM05D002948 ORTHO05D003577 4.0e-12 75.5 98 51.0
FAN27G1962 Fragaria x ananassa HOM05D002948 ORTHO05D003577 4.0e-12 75.5 122 44.3
MD05G1055300 Malus domestica HOM05D002948 ORTHO05D003577 4.0e-12 75.5 122 47.5
Phvul.009G002500 Phaseolus vulgaris HOM05D002948 ORTHO05D003577 4.0e-12 75.5 120 44.2
TAR376G0314 Trochodendron aralioides HOM05D002948 ORTHO05D003577 4.0e-12 75.5 57 64.9
CSS0028985 Camellia sinensis var. sinensis HOM05D002948 ORTHO05D003577 5.2e-12 75.1 57 66.7
Glyma.06G007500 Glycine max HOM05D002948 ORTHO05D003577 5.2e-12 75.1 121 42.1
Lalb_Chr01g0002141 Lupinus albus HOM05D002948 ORTHO05D003577 5.2e-12 75.1 115 45.2
Nitab4.5_0010630g0010 Nicotiana tabacum HOM05D002948 ORTHO05D003577 5.2e-12 75.1 92 48.9
Oeu002952.1 Olea europaea HOM05D002948 ORTHO05D003577 5.2e-12 75.1 92 50.0
TWI79G0104 Tripterygium wilfordii HOM05D002948 ORTHO05D003577 5.2e-12 75.1 126 42.9
Oeu010049.1 Olea europaea HOM05D002948 ORTHO05D003577 6.7e-12 74.7 115 46.1
Solyc10g054440.3 Solanum lycopersicum HOM05D002948 ORTHO05D003577 6.7e-12 74.7 119 44.5
Sopen10g024370 Solanum pennellii HOM05D002948 ORTHO05D003577 6.7e-12 74.7 119 44.5
Thecc.02G074500 Theobroma cacao HOM05D002948 ORTHO05D003577 6.7e-12 74.7 83 51.8
MSTRG.16854 Avicennia marina HOM05D002948 ORTHO05D003577 8.8e-12 74.3 119 45.4
Cfa005115 Carpinus fangiana HOM05D002948 ORTHO05D003577 8.8e-12 74.3 124 43.5
Haze_02235 Corylus avellana HOM05D002948 ORTHO05D003577 8.8e-12 74.3 124 43.5
Duzib052G1212 Durio zibethinus HOM05D002948 ORTHO05D003577 8.8e-12 74.3 57 64.9
FAN15G0007 Fragaria x ananassa HOM05D002948 ORTHO05D003577 8.8e-12 74.3 122 43.4
FAN20G1999 Fragaria x ananassa HOM05D002948 ORTHO05D003577 8.8e-12 74.3 122 43.4
Glyma.04G007700 Glycine max HOM05D002948 ORTHO05D003577 8.8e-12 74.3 123 43.9
Gohir.D04G165600 Gossypium hirsutum HOM05D002948 ORTHO05D003577 8.8e-12 74.3 57 61.4
Gorai.012G154100 Gossypium raimondii HOM05D002948 ORTHO05D003577 8.8e-12 74.3 57 61.4
Manes.04G083000 Manihot esculenta HOM05D002948 ORTHO05D003577 8.8e-12 74.3 92 50.0
PGSC0003DMG400026671 Solanum tuberosum HOM05D002948 ORTHO05D003577 8.8e-12 74.3 119 44.5
TWI75G1141 Tripterygium wilfordii HOM05D002948 ORTHO05D003577 8.8e-12 74.3 126 45.2
TAR628G1095 Trochodendron aralioides HOM05D002948 ORTHO05D003577 8.8e-12 74.3 57 63.2
arahy.Tifrunner.gnm1.ann1.C8NIIA Arachis hypogaea HOM05D002948 ORTHO05D003577 1.2e-11 73.9 57 63.2
CiPaw.05G073700 Carya illinoinensis HOM05D002948 ORTHO05D003577 1.2e-11 73.9 126 42.9
Migut.B00171 Erythranthe guttata HOM05D002948 ORTHO05D003577 1.2e-11 73.9 120 42.5
Nn5g29243 Nelumbo nucifera HOM05D002948 ORTHO05D003577 1.2e-11 73.9 91 49.5
Gorai.005G248700 Gossypium raimondii HOM05D002948 ORTHO05D003577 1.5e-11 73.6 57 63.2
Lsat_1_v5_gn_4_67421 Lactuca sativa HOM05D002948 ORTHO05D003577 1.5e-11 73.6 85 49.4
Actinidia20472 Actinidia chinensis HOM05D002948 ORTHO05D003577 2.0e-11 73.2 57 63.2
Oeu055637.1 Olea europaea HOM05D002948 ORTHO05D003577 2.0e-11 73.2 57 63.2
Sed0015136 Sechium edule HOM05D002948 ORTHO05D003577 2.0e-11 73.2 83 49.4
ClCG11G003830 Citrullus lanatus HOM05D002948 ORTHO05D003577 2.6e-11 72.8 91 47.3
Ciclev10027873m.g Citrus clementina HOM05D002948 ORTHO05D003577 2.6e-11 72.8 103 47.6
VMungo1309G2352 Vigna mungo HOM05D002948 ORTHO05D003577 2.6e-11 72.8 120 45.0
Gohir.A03G199500 Gossypium hirsutum HOM05D002948 ORTHO05D003577 3.3e-11 72.4 57 61.4
Gohir.A13G091000 Gossypium hirsutum HOM05D002948 ORTHO05D003577 3.3e-11 72.4 93 48.4
Gohir.D13G096600 Gossypium hirsutum HOM05D002948 ORTHO05D003577 3.3e-11 72.4 93 48.4
Gorai.002G149300 Gossypium raimondii HOM05D002948 ORTHO05D003577 3.3e-11 72.4 93 48.4
SGA_v2.0_scaffold207G41879 Striga asiatica HOM05D002948 ORTHO05D003577 3.3e-11 72.4 119 44.5
CiPaw.06G127900 Carya illinoinensis HOM05D002948 ORTHO05D003577 4.4e-11 72.0 79 50.6
Gohir.D02G220800 Gossypium hirsutum HOM05D002948 ORTHO05D003577 4.4e-11 72.0 57 61.4
Duzib248G1070 Durio zibethinus HOM05D002948 ORTHO05D003577 5.7e-11 71.6 57 59.6
ECA240G1699 Erigeron canadensis HOM05D002948 ORTHO05D003577 5.7e-11 71.6 115 43.5
Cc02_g16860 Coffea canephora HOM05D002948 ORTHO05D003577 7.5e-11 71.2 96 45.8
MSTRG.20037 Avicennia marina HOM05D002948 ORTHO05D003577 9.7e-11 70.9 119 45.4
MELO3C023359.2 Cucumis melo HOM05D002948 ORTHO05D003577 9.7e-11 70.9 57 61.4
Rhsim11G0184100 Rhododendron simsii HOM05D002948 ORTHO05D003577 9.7e-11 70.9 90 48.9
CDE04G0128 Ceratophyllum demersum HOM05D002948 ORTHO05D006079 1.3e-10 70.5 57 56.1
Lalb_Chr19g0138971 Lupinus albus HOM05D002948 ORTHO05D003577 1.3e-10 70.5 123 43.1
Dinv41995 Davidia involucrata HOM05D002948 ORTHO05D003577 1.7e-10 70.1 79 48.1
Nn4g26318 Nelumbo nucifera HOM05D002948 ORTHO05D003577 1.7e-10 70.1 136 39.0
Nn6g32257 Nelumbo nucifera HOM05D002948 ORTHO05D003577 1.7e-10 70.1 136 39.0
Sc08g0000930 Simmondsia chinensis HOM05D002948 ORTHO05D003577 1.7e-10 70.1 101 46.5
HPP92_020657 Vanilla planifolia HOM05D002948 ORTHO05D003577 1.7e-10 70.1 57 59.6
EL10Ac9g21627 Beta vulgaris HOM05D002948 ORTHO05D003577 2.2e-10 69.7 57 56.1
AUR62016840 Chenopodium quinoa HOM05D002948 ORTHO05D003577 2.2e-10 69.7 102 45.1
Medtr4g072020 Medicago truncatula HOM05D002948 ORTHO05D003577 2.2e-10 69.7 146 37.7
TPR.G7028 Trifolium pratense HOM05D002948 ORTHO05D003577 2.2e-10 69.7 141 39.7
AUR62010378 Chenopodium quinoa HOM05D002948 ORTHO05D003577 2.8e-10 69.3 102 45.1
Ca_20935_v3 Cicer arietinum L. HOM05D002948 ORTHO05D003577 2.8e-10 69.3 140 40.0
Psat7g140360 Pisum sativum HOM05D002948 ORTHO05D003577 2.8e-10 69.3 112 40.2
Sc18g0005400 Simmondsia chinensis HOM05D002948 ORTHO05D003577 2.8e-10 69.3 85 49.4
unitig_0.g48 Utricularia gibba HOM05D002948 ORTHO05D003577 2.8e-10 69.3 114 43.9
CDE02G4566 Ceratophyllum demersum HOM05D002948 ORTHO05D003577 3.7e-10 68.9 57 54.4
Hma1.2p1_0032F.1_g020070 Hydrangea macrophylla HOM05D002948 ORTHO05D003577 3.7e-10 68.9 121 41.3
SalBow3G2063 Salvia bowleyana HOM05D002948 ORTHO05D003577 3.7e-10 68.9 98 42.9
MSTRG.5424 Avicennia marina HOM05D002948 ORTHO05D003577 4.8e-10 68.6 99 40.4
Ah.01g018720 Amaranthus hybridus HOM05D002948 ORTHO05D003577 6.3e-10 68.2 57 57.9
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 8.2e-10 67.8 87 49.4
CDE09G0099 Ceratophyllum demersum HOM05D002948 ORTHO05D003577 8.2e-10 67.8 92 44.6
HanXRQChr15g0478321 Helianthus annuus HOM05D002948 ORTHO05D003577 8.2e-10 67.8 84 46.4
CsaV3_2G015310 Cucumis sativus L. HOM05D002948 ORTHO05D003577 1.4e-09 67.0 131 42.0
unitig_60.g25437 Utricularia gibba HOM05D002948 ORTHO05D003577 2.4e-09 66.2 114 40.4
HanXRQChr17g0543721 Helianthus annuus HOM05D002948 ORTHO05D003577 4.1e-09 65.5 107 43.0
Lsat_1_v5_gn_3_44201 Lactuca sativa HOM05D002948 ORTHO05D003577 5.3e-09 65.1 131 38.2
Lsat_1_v5_gn_3_136581 Lactuca sativa HOM05D002948 ORTHO05D003577 7.0e-09 64.7 48 60.4
Thecc.04G202400 Theobroma cacao HOM05D002948 ORTHO05D003577 7.0e-09 64.7 58 58.6
CDE02G0749 Ceratophyllum demersum HOM05D002948 ORTHO05D003577 1.2e-08 63.9 86 44.2
PGR142G4254 Punica granatum HOM05D002948 ORTHO05D003577 1.2e-08 63.9 86 44.2
ATR0149G028 Amborella trichopoda HOM05D002948 ORTHO05D003577 1.6e-08 63.5 57 56.1
Gohir.D04G165700 Gossypium hirsutum HOM05D002948 ORTHO05D003577 2.0e-08 63.2 48 60.4
MBI05_g16275_MAGBIO Magnolia biondii HOM05D002948 ORTHO05D003577 2.7e-08 62.8 106 43.4
Nn1g05620 Nelumbo nucifera HOM05D002948 ORTHO05D003577 2.7e-08 62.8 79 45.6
Migut.N01279 Erythranthe guttata HOM05D002948 ORTHO05D003577 5.9e-08 61.6 105 42.9
SHI43297 Sapria himalayana HOM05D002948 ORTHO05D003577 1.7e-07 60.1 87 40.2
PGR142G0309 Punica granatum HOM05D002948 ORTHO05D003577 2.2e-07 59.7 91 41.8
COL.COLO4_20154 Corchorus olitorius HOM05D002948 ORTHO05D003577 1.1e-06 57.4 79 50.6
Os06g0131300 Oryza sativa ssp. japonica HOM05D002948 ORTHO05D003577 1.5e-06 57.0 57 49.1
Zm00001eb378210 Zea mays HOM05D002948 ORTHO05D003577 5.5e-06 55.1 90 40.0


User provided reference genes

Program Settings