Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06662 Brassica carinata HOM05D004885 ORTHO05D006124 2.3e-111 405.6 211 100.0
BraA01t04432Z Brassica rapa HOM05D001895 ORTHO05D002082 6.0e-83 311.2 247 70.9
Thhalv10020408m.g Eutrema salsugineum HOM05D004885 ORTHO05D006124 1.1e-81 307.0 247 69.2
BNapus_Darmor_BZH_scaffold_118p00060 Brassica napus HOM05D001895 ORTHO05D002082 1.9e-81 306.2 230 73.0
BolC5t34729H Brassica oleracea HOM05D004885 ORTHO05D006124 7.3e-81 304.3 250 66.8
C05p60690 Brassica napus HOM05D001895 ORTHO05D002082 1.6e-80 303.1 250 66.4
A05p41490 Brassica napus HOM05D001895 ORTHO05D002082 4.7e-80 301.6 251 66.9
Sp3g05480 Schrenkiella parvula HOM05D004885 ORTHO05D006124 1.4e-79 300.1 246 67.5
BraA05t22870Z Brassica rapa HOM05D004885 ORTHO05D006124 7.6e-78 294.3 253 65.6
AL3G17570 Arabidopsis lyrata HOM05D004885 ORTHO05D006124 2.2e-77 292.7 246 65.4
AT3G06540 Arabidopsis thaliana HOM05D004885 ORTHO05D006124 2.2e-77 292.7 248 66.1
Carub.0003s0600 Capsella rubella HOM05D004885 ORTHO05D006124 2.5e-73 279.3 246 63.0
Aa31LG5G17090 Aethionema arabicum HOM05D004885 ORTHO05D006124 7.1e-60 234.6 248 56.0
THA.LOC104823506 Tarenaya hassleriana HOM05D004885 ORTHO05D006124 1.1e-49 200.7 240 48.3
Cpa.g.sc365.1 Carica papaya HOM05D004885 ORTHO05D006124 1.3e-40 170.6 235 43.0
VMungo1215G0823 Vigna mungo HOM05D004885 ORTHO05D006124 6.9e-39 164.9 237 41.4
Atru.chr3.136 Acer truncatum HOM05D004885 ORTHO05D006124 1.0e-37 161.0 241 43.2
Atru.chr4.1890 Acer truncatum HOM05D004885 ORTHO05D006124 1.3e-37 160.6 238 43.7
CANSAT80G0225 Cannabis sativa HOM05D004885 ORTHO05D006124 3.8e-37 159.1 231 41.6
Ca_24977_v3 Cicer arietinum L. HOM05D004885 ORTHO05D006124 6.5e-37 158.3 245 38.8
Lj2g0026862 Lotus japonicus HOM05D004885 ORTHO05D006124 1.4e-36 157.1 236 40.3
Manes.01G155100 Manihot esculenta HOM05D004885 ORTHO05D006124 4.2e-36 155.6 236 39.8
Phvul.002G116400 Phaseolus vulgaris HOM05D004885 ORTHO05D006124 4.2e-36 155.6 245 39.2
Ciclev10025327m.g Citrus clementina HOM05D004885 ORTHO05D006124 1.2e-35 154.1 244 45.1
COL.COLO4_10588 Corchorus olitorius HOM05D004885 ORTHO05D006124 1.2e-35 154.1 264 40.2
Glyma.01G159000 Glycine max HOM05D004885 ORTHO05D006124 1.2e-35 154.1 236 37.3
TWI53G2056 Tripterygium wilfordii HOM05D004885 ORTHO05D006124 1.2e-35 154.1 238 43.3
TWI09G0982 Tripterygium wilfordii HOM05D004885 ORTHO05D006124 2.7e-35 152.9 235 43.0
QL04p013021 Quercus lobata HOM05D004885 ORTHO05D006124 1.4e-34 150.6 233 40.8
GSVIVG01026648001 Vitis vinifera HOM05D004885 ORTHO05D006124 1.4e-34 150.6 238 42.0
Medtr5g024150 Medicago truncatula HOM05D004885 ORTHO05D006124 2.3e-34 149.8 241 38.6
Glyma.11G085700 Glycine max HOM05D004885 ORTHO05D006124 3.9e-34 149.1 238 37.4
arahy.Tifrunner.gnm1.ann1.E2QT4D Arachis hypogaea HOM05D004885 ORTHO05D006124 5.1e-34 148.7 235 35.7
arahy.Tifrunner.gnm1.ann1.P2H8QY Arachis hypogaea HOM05D004885 ORTHO05D006124 5.1e-34 148.7 235 35.7
Thecc.01G005900 Theobroma cacao HOM05D004885 ORTHO05D006124 5.1e-34 148.7 264 38.3
Duzib147G0190 Durio zibethinus HOM05D004885 ORTHO05D006124 2.5e-33 146.4 264 38.3
Dinv40183 Davidia involucrata HOM05D004885 ORTHO05D006124 3.3e-33 146.0 242 41.3
CiPaw.06G030500 Carya illinoinensis HOM05D004885 ORTHO05D006124 4.3e-33 145.6 247 38.5
Haze_00453 Corylus avellana HOM05D004885 ORTHO05D006124 7.4e-33 144.8 245 36.3
Aqoxy3G00208 Aquilegia oxysepala HOM05D004885 ORTHO05D006124 2.8e-32 142.9 237 37.1
Hma1.2p1_0300F.1_g118050 Hydrangea macrophylla HOM05D004885 ORTHO05D006124 4.8e-32 142.1 230 39.1
CsaV3_3G000260 Cucumis sativus L. HOM05D004885 ORTHO05D006124 6.3e-32 141.7 235 38.7
Gohir.A07G170900 Gossypium hirsutum HOM05D004885 ORTHO05D006124 8.2e-32 141.4 260 38.5
Gohir.D07G177700 Gossypium hirsutum HOM05D004885 ORTHO05D006124 8.2e-32 141.4 260 38.8
Gorai.001G198800 Gossypium raimondii HOM05D004885 ORTHO05D006124 8.2e-32 141.4 260 38.8
PSO724G1376 Papaver somniferum HOM05D004885 ORTHO05D006124 8.2e-32 141.4 238 40.3
Dinv08168 Davidia involucrata HOM05D004885 ORTHO05D006124 1.1e-31 141.0 243 40.7
Hma1.2p1_0085F.1_g044730 Hydrangea macrophylla HOM05D004885 ORTHO05D006124 1.8e-31 140.2 237 38.4
Sed0002359 Sechium edule HOM05D004885 ORTHO05D006124 4.1e-31 139.0 211 40.8
RcHm_v2.0_Chr2g0097311 Rosa chinensis HOM05D004885 ORTHO05D006124 5.3e-31 138.7 243 37.9
MBI15_g00077_MAGBIO Magnolia biondii HOM05D004885 ORTHO05D006124 6.9e-31 138.3 240 38.3
MD02G1117700 Malus domestica HOM05D004885 ORTHO05D006124 9.1e-31 137.9 251 39.0
MD15G1232400 Malus domestica HOM05D004885 ORTHO05D006124 9.1e-31 137.9 246 39.8
Sabra05G0033700 Salix brachista HOM05D004885 ORTHO05D006124 9.1e-31 137.9 266 35.7
Lalb_Chr09g0324741 Lupinus albus HOM05D004885 ORTHO05D006124 2.6e-30 136.3 244 34.0
FvH4_1g10450 Fragaria vesca HOM05D004885 ORTHO05D006124 4.5e-30 135.6 243 36.6
CSS0014238 Camellia sinensis var. sinensis HOM05D004885 ORTHO05D006124 5.9e-30 135.2 242 38.8
Eucgr.I02226 Eucalyptus grandis HOM05D004885 ORTHO05D006124 5.9e-30 135.2 234 39.3
FAN26G3465 Fragaria x ananassa HOM05D004885 ORTHO05D006124 7.7e-30 134.8 234 37.2
Actinidia22902 Actinidia chinensis HOM05D004885 ORTHO05D006124 1.0e-29 134.4 229 39.7
CSS0037388 Camellia sinensis var. sinensis HOM05D004885 ORTHO05D006124 2.2e-29 133.3 227 39.2
FAN28G2162 Fragaria x ananassa HOM05D004885 ORTHO05D006124 3.8e-29 132.5 243 36.2
HanXRQChr14g0442521 Helianthus annuus HOM05D004885 ORTHO05D006124 3.8e-29 132.5 241 36.1
Lj4C235G2 Lonicera japonica HOM05D004885 ORTHO05D006124 3.8e-29 132.5 250 34.8
Cc07_g11780 Coffea canephora HOM05D004885 ORTHO05D006124 5.0e-29 132.1 237 38.8
PSO386G0181 Papaver somniferum HOM05D004885 ORTHO05D006124 5.0e-29 132.1 215 40.9
Nn4g22671 Nelumbo nucifera HOM05D004885 ORTHO05D006124 1.9e-28 130.2 241 38.6
HPP92_017799 Vanilla planifolia HOM05D004885 ORTHO05D006124 2.5e-28 129.8 234 37.2
TAR629G2658 Trochodendron aralioides HOM05D004885 ORTHO05D006124 3.2e-28 129.4 212 37.7
Prupe.7G181700 Prunus persica HOM05D004885 ORTHO05D006124 9.4e-28 127.9 242 38.4
PGR102G0956 Punica granatum HOM05D004885 ORTHO05D006124 9.4e-28 127.9 223 35.4
Hund03605 Selenicereus undatus HOM05D004885 ORTHO05D006124 9.4e-28 127.9 246 35.4
ECA238G4274 Erigeron canadensis HOM05D004885 ORTHO05D006124 2.1e-27 126.7 244 32.8
CDE06G1258 Ceratophyllum demersum HOM05D004885 ORTHO05D006124 2.7e-27 126.3 238 34.9
AUR62033951 Chenopodium quinoa HOM05D004885 ORTHO05D006124 4.7e-27 125.6 265 34.0
AUR62029056 Chenopodium quinoa HOM05D004885 ORTHO05D006124 7.9e-27 124.8 247 36.0
CDE08G1303 Ceratophyllum demersum HOM05D004885 ORTHO05D006124 1.0e-26 124.4 238 34.5
ATR0605G212 Amborella trichopoda HOM05D004885 ORTHO05D006124 6.7e-26 121.7 245 32.2
Nitab4.5_0001936g0130 Nicotiana tabacum HOM05D004885 ORTHO05D006124 8.8e-26 121.3 237 35.4
EL10Ac8g19196 Beta vulgaris HOM05D004885 ORTHO05D006124 2.6e-25 119.8 251 35.1
DCAR_006252 Daucus carota HOM05D004885 ORTHO05D006124 2.6e-25 119.8 238 35.3
CAN.G1238.6 Capsicum annuum HOM05D004885 ORTHO05D006124 3.3e-25 119.4 234 35.5
Cc11_g03220 Coffea canephora HOM05D004885 ORTHO05D006124 5.7e-25 118.6 237 34.2
Potri.005G030000 Populus trichocarpa HOM05D004885 ORTHO05D006124 5.7e-25 118.6 180 40.0
Sopen02g027490 Solanum pennellii HOM05D004885 ORTHO05D006124 9.7e-25 117.9 233 36.1
PGSC0003DMG401001521 Solanum tuberosum HOM05D004885 ORTHO05D006124 1.7e-24 117.1 236 35.6
Solyc02g082730.3 Solanum lycopersicum HOM05D004885 ORTHO05D006124 2.8e-24 116.3 233 36.1
MD10G1065000 Malus domestica HOM05D004885 ORTHO05D006124 3.7e-24 115.9 228 36.8
unitig_37.g12359 Utricularia gibba HOM05D004885 ORTHO05D006124 3.7e-24 115.9 189 38.6
QL04p012404 Quercus lobata HOM05D004885 ORTHO05D006124 1.1e-23 114.4 180 38.3
Potri.005G028900 Populus trichocarpa HOM05D004885 ORTHO05D006124 1.8e-23 113.6 180 38.9
Lsat_1_v5_gn_2_73361 Lactuca sativa HOM05D004885 ORTHO05D006124 2.4e-23 113.2 186 41.4
Peaxi162Scf01051g00141 Petunia axillaris HOM05D004885 ORTHO05D006124 4.1e-23 112.5 234 34.6
MD17G1057100 Malus domestica HOM05D004885 ORTHO05D006124 5.3e-23 112.1 236 34.7
Nitab4.5_0006177g0010 Nicotiana tabacum HOM05D004885 ORTHO05D006124 1.2e-22 110.9 239 34.7
Psat2g149880 Pisum sativum HOM05D004885 ORTHO05D006124 1.2e-22 110.9 129 43.4
Migut.C00024 Erythranthe guttata HOM05D004885 ORTHO05D006124 4.5e-22 109.0 235 33.2
SGA_v2.0_scaffold376G50298 Striga asiatica HOM05D004885 ORTHO05D006124 5.9e-22 108.6 223 36.3
MBI01_g31987_MAGBIO Magnolia biondii HOM05D004885 ORTHO05D006124 3.8e-21 105.9 188 35.1
Rhsim08G0027300 Rhododendron simsii HOM05D004885 ORTHO05D006124 8.5e-21 104.8 218 36.2
Zm00001eb128670 Zea mays HOM05D004885 ORTHO05D006124 1.2e-19 100.9 232 31.0
Zm00001eb333020 Zea mays HOM05D004885 ORTHO05D006124 2.1e-19 100.1 228 29.8
Ah.14g085190 Amaranthus hybridus HOM05D004885 ORTHO05D006124 3.6e-19 99.4 318 30.2
Nitab4.5_0024681g0010 Nicotiana tabacum HOM05D004885 ORTHO05D006124 4.7e-19 99.0 161 38.5
vmacro18463 Vaccinium macrocarpon HOM05D004885 ORTHO05D006124 4.0e-18 95.9 179 34.6
Sc16g0001670 Simmondsia chinensis HOM05D004885 ORTHO05D006124 6.7e-18 95.1 186 34.4
TPR.G39950 Trifolium pratense HOM05D004885 ORTHO05D006124 9.7e-17 91.3 124 39.5
C05p54650 Brassica napus HOM05D004885 ORTHO05D006124 8.2e-16 88.2 71 66.2
BolC5t34133H Brassica oleracea HOM05D004885 ORTHO05D006124 8.2e-16 88.2 71 66.2
SEGI_12272 Sequoiadendron giganteum HOM05D004885 ORTHO05D006124 8.2e-16 88.2 177 32.8
Oeu012449.1 Olea europaea HOM05D004885 ORTHO05D006124 7.0e-15 85.1 241 30.7
SGA_v2.0_scaffold334G49087 Striga asiatica HOM05D004885 ORTHO05D006124 9.1e-15 84.7 185 34.1
QL04p012417 Quercus lobata HOM05D002173 ORTHO05D002189 1.4e-10 70.9 139 36.7
AagrBONN_evm.TU.Sc2ySwM_117.1017 Anthoceros agrestis HOM05D004885 ORTHO05D006124 2.6e-09 66.6 199 27.1
Nitab4.5_0000702g0180 Nicotiana tabacum HOM05D004607 ORTHO05D005836 2.6e-09 66.6 86 38.4
Pp3c12_25630 Physcomitrium patens HOM05D004885 ORTHO05D006124 4.4e-09 65.9 273 25.6
C05p54670 Brassica napus HOM05D046167 ORTHO05D040695 5.7e-09 65.5 41 73.2
BolC5t34136H Brassica oleracea HOM05D046167 ORTHO05D040695 5.7e-09 65.5 41 73.2
Mapoly0007s0130 Marchantia polymorpha HOM05D004885 ORTHO05D006124 5.7e-09 65.5 258 25.2
Cc07_g11790 Coffea canephora HOM05D004885 ORTHO05D006124 9.8e-09 64.7 183 27.3
TPR.G39534 Trifolium pratense HOM05D004885 ORTHO05D006124 1.1e-07 61.2 115 33.9
PSO210G5901 Papaver somniferum HOM05D004885 ORTHO05D006124 2.0e-06 57.0 171 29.2


User provided reference genes

Program Settings