Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung06282 Brassica carinata HOM05D003507 ORTHO05D004324 9.7e-103 376.7 176 100.0
BcaC05g29472 Brassica carinata HOM05D003507 ORTHO05D004324 1.2e-73 280.0 136 98.5
A05p38780 Brassica napus HOM05D003507 ORTHO05D004324 1.2e-73 280.0 136 98.5
C05p57790 Brassica napus HOM05D003507 ORTHO05D004324 1.2e-73 280.0 136 98.5
BolC5t34436H Brassica oleracea HOM05D003507 ORTHO05D004324 1.2e-73 280.0 136 98.5
BraA05t22670Z Brassica rapa HOM05D003507 ORTHO05D004324 1.2e-73 280.0 136 98.5
BcaB04g21215 Brassica carinata HOM05D003507 ORTHO05D004324 4.7e-73 278.1 136 97.8
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 4.7e-73 278.1 136 97.8
A01p41890 Brassica napus HOM05D003507 ORTHO05D004324 4.7e-73 278.1 136 97.8
BolC1t05405H Brassica oleracea HOM05D003507 ORTHO05D004324 4.7e-73 278.1 136 97.8
BraA01t04259Z Brassica rapa HOM05D003507 ORTHO05D004324 4.7e-73 278.1 136 97.8
AL3G21700 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 1.0e-72 276.9 136 97.8
AT3G10370 Arabidopsis thaliana HOM05D003507 ORTHO05D004324 1.0e-72 276.9 136 97.8
CARHR084850 Cardamine hirsuta HOM05D003507 ORTHO05D004324 4.0e-72 275.0 136 97.1
Sp3g08640 Schrenkiella parvula HOM05D003507 ORTHO05D004324 6.8e-72 274.2 136 97.1
Carub.0003s0955 Capsella rubella HOM05D003507 ORTHO05D004324 1.2e-71 273.5 136 97.1
Thhalv10020293m.g Eutrema salsugineum HOM05D003507 ORTHO05D004324 5.7e-71 271.2 136 96.3
Glyma.02G165500 Glycine max HOM05D003507 ORTHO05D004324 1.1e-69 266.9 136 93.4
GSVIVG01016222001 Vitis vinifera HOM05D003507 ORTHO05D004324 1.8e-69 266.2 136 93.4
Gohir.A06G168100 Gossypium hirsutum HOM05D003507 ORTHO05D004324 2.4e-69 265.8 136 92.6
Aa31LG1G21080 Aethionema arabicum HOM05D003507 ORTHO05D004324 3.1e-69 265.4 136 94.1
Gohir.D06G175500 Gossypium hirsutum HOM05D003507 ORTHO05D004324 3.1e-69 265.4 136 92.6
Gorai.010G205900 Gossypium raimondii HOM05D003507 ORTHO05D004324 3.1e-69 265.4 136 92.6
COL.COLO4_17137 Corchorus olitorius HOM05D003507 ORTHO05D004324 5.4e-69 264.6 133 94.0
Haze_16857 Corylus avellana HOM05D003507 ORTHO05D004324 5.4e-69 264.6 136 93.4
Zm00001eb419210 Zea mays HOM05D003507 ORTHO05D004324 5.4e-69 264.6 136 91.2
Sabra10G0175000 Salix brachista HOM05D003507 ORTHO05D004324 7.0e-69 264.2 136 91.9
Psat6g130440 Pisum sativum HOM05D003507 ORTHO05D004324 9.1e-69 263.8 136 91.2
Potri.010G226700 Populus trichocarpa HOM05D003507 ORTHO05D004324 9.1e-69 263.8 136 91.9
Sed0010237 Sechium edule HOM05D003507 ORTHO05D004324 9.1e-69 263.8 136 91.9
Sc20g0001600 Simmondsia chinensis HOM05D003507 ORTHO05D004324 1.2e-68 263.5 136 91.9
arahy.Tifrunner.gnm1.ann1.X5QL3X Arachis hypogaea HOM05D003507 ORTHO05D004324 1.6e-68 263.1 136 91.2
CANSAT56G3424 Cannabis sativa HOM05D003507 ORTHO05D004324 1.6e-68 263.1 136 91.9
Cfa001677 Carpinus fangiana HOM05D003507 ORTHO05D004324 1.6e-68 263.1 136 92.6
ClCG08G007670 Citrullus lanatus HOM05D003507 ORTHO05D004324 1.6e-68 263.1 136 91.9
MELO3C019820.2 Cucumis melo HOM05D003507 ORTHO05D004324 1.6e-68 263.1 136 91.9
SalBow4G0138 Salvia bowleyana HOM05D003507 ORTHO05D004324 1.6e-68 263.1 136 91.9
Migut.F01958 Erythranthe guttata HOM05D003507 ORTHO05D004324 2.0e-68 262.7 136 92.6
Nitab4.5_0001659g0110 Nicotiana tabacum HOM05D003507 ORTHO05D004324 2.0e-68 262.7 136 91.2
TPR.G7608 Trifolium pratense HOM05D003507 ORTHO05D004324 2.0e-68 262.7 136 90.4
VMungo0720G1021 Vigna mungo HOM05D003507 ORTHO05D004324 2.0e-68 262.7 136 91.9
Medtr1g050720 Medicago truncatula HOM05D003507 ORTHO05D004324 2.7e-68 262.3 136 89.7
Psat6g180000 Pisum sativum HOM05D003507 ORTHO05D004324 2.7e-68 262.3 136 91.9
THA.LOC104816425 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 2.7e-68 262.3 136 91.9
TWI63G0759 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 2.7e-68 262.3 137 91.2
Duzib114G0668 Durio zibethinus HOM05D003507 ORTHO05D004324 3.5e-68 261.9 136 90.4
MD07G1170100 Malus domestica HOM05D003507 ORTHO05D004324 3.5e-68 261.9 136 91.9
MD07G1170200 Malus domestica HOM05D003507 ORTHO05D004324 3.5e-68 261.9 136 91.9
RcHm_v2.0_Chr1g0362611 Rosa chinensis HOM05D003507 ORTHO05D004324 3.5e-68 261.9 136 91.9
THA.LOC104826896 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 3.5e-68 261.9 136 92.6
CsaV3_6G036660 Cucumis sativus L. HOM05D003507 ORTHO05D004324 4.5e-68 261.5 136 91.2
Duzib128G1288 Durio zibethinus HOM05D003507 ORTHO05D004324 4.5e-68 261.5 136 90.4
PSO210G4234 Papaver somniferum HOM05D003507 ORTHO05D004324 4.5e-68 261.5 136 91.9
PSO210G6851 Papaver somniferum HOM05D003507 ORTHO05D004324 4.5e-68 261.5 136 91.9
Thecc.10G083100 Theobroma cacao HOM05D003507 ORTHO05D004324 4.5e-68 261.5 136 91.9
TWI38G0486 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 4.5e-68 261.5 136 91.2
arahy.Tifrunner.gnm1.ann1.WAL6D9 Arachis hypogaea HOM05D003507 ORTHO05D004324 5.9e-68 261.2 136 90.4
FvH4_7g18820 Fragaria vesca HOM05D003507 ORTHO05D004324 5.9e-68 261.2 136 91.2
FAN01G0276 Fragaria x ananassa HOM05D003507 ORTHO05D004324 5.9e-68 261.2 136 91.2
FAN03G2323 Fragaria x ananassa HOM05D003507 ORTHO05D004324 5.9e-68 261.2 136 91.2
FAN06G1568 Fragaria x ananassa HOM05D003507 ORTHO05D004324 5.9e-68 261.2 136 91.2
FAN06G2975 Fragaria x ananassa HOM05D003507 ORTHO05D004324 5.9e-68 261.2 136 91.2
FAN10G1468 Fragaria x ananassa HOM05D003507 ORTHO05D004324 5.9e-68 261.2 136 91.2
FAN10G2698 Fragaria x ananassa HOM05D003507 ORTHO05D004324 5.9e-68 261.2 136 91.2
SGA_v2.0_scaffold62G21389 Striga asiatica HOM05D003507 ORTHO05D004324 5.9e-68 261.2 136 91.9
CiPaw.01G268800 Carya illinoinensis HOM05D003507 ORTHO05D004324 7.7e-68 260.8 136 89.7
Eucgr.G02866 Eucalyptus grandis HOM05D003507 ORTHO05D004324 7.7e-68 260.8 136 91.2
Ca_11760_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 1.0e-67 260.4 136 89.7
HanXRQChr08g0218541 Helianthus annuus HOM05D003507 ORTHO05D004324 1.0e-67 260.4 136 91.2
Rhsim03G0116200 Rhododendron simsii HOM05D003507 ORTHO05D004324 1.0e-67 260.4 136 91.2
DCAR_019087 Daucus carota HOM05D003507 ORTHO05D004324 1.3e-67 260.0 136 91.2
ECA233G4141 Erigeron canadensis HOM05D003507 ORTHO05D004324 1.3e-67 260.0 136 91.2
MD01G1103300 Malus domestica HOM05D003507 ORTHO05D004324 1.3e-67 260.0 136 91.2
Phvul.007G245200 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 1.3e-67 260.0 136 91.2
Atru.chr12.838 Acer truncatum HOM05D003507 ORTHO05D008357 1.7e-67 259.6 136 91.9
Dinv31230 Davidia involucrata HOM05D003507 ORTHO05D004324 1.7e-67 259.6 136 91.2
HanXRQChr17g0564181 Helianthus annuus HOM05D003507 ORTHO05D004324 1.7e-67 259.6 136 90.4
CAN.G1121.6 Capsicum annuum HOM05D003507 ORTHO05D004324 2.3e-67 259.2 136 90.4
Glyma.20G183100 Glycine max HOM05D003507 ORTHO05D004324 2.3e-67 259.2 136 90.4
Gohir.D04G004700 Gossypium hirsutum HOM05D003507 ORTHO05D004324 2.3e-67 259.2 136 90.4
Gorai.012G005900 Gossypium raimondii HOM05D003507 ORTHO05D004324 2.3e-67 259.2 136 90.4
MBI18_g28045_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 2.3e-67 259.2 136 89.7
QL08p054391 Quercus lobata HOM05D003507 ORTHO05D004324 2.3e-67 259.2 136 90.4
QL08p054526 Quercus lobata HOM05D003507 ORTHO05D004324 2.3e-67 259.2 136 90.4
Sed0023455 Sechium edule HOM05D003507 ORTHO05D004324 2.3e-67 259.2 136 89.0
Hund22747 Selenicereus undatus HOM05D003507 ORTHO05D004324 2.3e-67 259.2 136 91.2
Gohir.A05G411300 Gossypium hirsutum HOM05D003507 ORTHO05D004324 2.9e-67 258.8 136 89.7
Lj5g0027490 Lotus japonicus HOM05D003507 ORTHO05D004324 2.9e-67 258.8 136 90.4
Manes.07G133156 Manihot esculenta HOM05D003507 ORTHO05D004324 2.9e-67 258.8 136 90.4
Manes.10G050100 Manihot esculenta HOM05D003507 ORTHO05D004324 2.9e-67 258.8 136 89.7
Prupe.2G209000 Prunus persica HOM05D003507 ORTHO05D004324 2.9e-67 258.8 136 90.4
TAR623G1746 Trochodendron aralioides HOM05D003507 ORTHO05D004324 3.8e-67 258.5 136 89.0
unitig_88.g27816 Utricularia gibba HOM05D003507 ORTHO05D004324 3.8e-67 258.5 136 89.0
vmacro07121 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 3.8e-67 258.5 135 91.1
MSTRG.27484 Avicennia marina HOM05D003507 ORTHO05D004324 5.0e-67 258.1 136 89.7
Lsat_1_v5_gn_8_20780 Lactuca sativa HOM05D003507 ORTHO05D004324 5.0e-67 258.1 136 90.4
CiPaw.02G172300 Carya illinoinensis HOM05D003507 ORTHO05D004324 6.5e-67 257.7 136 91.2
Dinv36393 Davidia involucrata HOM05D003507 ORTHO05D004324 6.5e-67 257.7 136 89.7
Glyma.10G207700 Glycine max HOM05D003507 ORTHO05D004324 6.5e-67 257.7 136 90.4
HPP92_008484 Vanilla planifolia HOM05D003507 ORTHO05D004324 6.5e-67 257.7 136 89.0
Actinidia18606 Actinidia chinensis HOM05D003507 ORTHO05D004324 8.6e-67 257.3 136 89.7
MSTRG.9152 Avicennia marina HOM05D003507 ORTHO05D004324 8.6e-67 257.3 136 88.2
Ca_10543_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 8.6e-67 257.3 136 89.7
Oeu013840.1 Olea europaea HOM05D003507 ORTHO05D004324 8.6e-67 257.3 136 90.4
ATR0219G019 Amborella trichopoda HOM05D003507 ORTHO05D004324 1.5e-66 256.5 136 86.8
A07p45220 Brassica napus HOM05D003507 ORTHO05D004324 1.5e-66 256.5 136 88.2
PGR142G1627 Punica granatum HOM05D003507 ORTHO05D004324 1.5e-66 256.5 136 90.4
THA.LOC104824233 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 1.5e-66 256.5 136 89.7
ECA232G4763 Erigeron canadensis HOM05D003507 ORTHO05D004324 1.9e-66 256.1 136 90.4
Sc09g0006070 Simmondsia chinensis HOM05D003507 ORTHO05D004324 1.9e-66 256.1 136 88.2
Aqoxy1G01151 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 2.5e-66 255.8 136 89.7
Cc02_g10950 Coffea canephora HOM05D003507 ORTHO05D004324 2.5e-66 255.8 136 90.4
Os04g0224900 Oryza sativa ssp. japonica HOM05D003507 ORTHO05D004324 2.5e-66 255.8 136 88.2
VMungo0720G1977 Vigna mungo HOM05D003507 ORTHO05D004324 3.2e-66 255.4 136 90.4
BraA07t32025Z Brassica rapa HOM05D003507 ORTHO05D004324 4.2e-66 255.0 136 87.5
Nn6g35287 Nelumbo nucifera HOM05D003507 ORTHO05D004324 4.2e-66 255.0 136 88.2
C06p54060 Brassica napus HOM05D003507 ORTHO05D004324 9.5e-66 253.8 136 87.5
BolC6t40419H Brassica oleracea HOM05D003507 ORTHO05D004324 9.5e-66 253.8 136 87.5
EL10Ac1g02015 Beta vulgaris HOM05D003507 ORTHO05D004324 1.2e-65 253.4 148 83.8
Lsat_1_v5_gn_9_70220 Lactuca sativa HOM05D003507 ORTHO05D004324 1.2e-65 253.4 133 90.2
Nn2g13785 Nelumbo nucifera HOM05D003507 ORTHO05D004324 1.2e-65 253.4 136 87.5
Phvul.007G099000 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 1.2e-65 253.4 136 89.0
arahy.Tifrunner.gnm1.ann1.8GLB3P Arachis hypogaea HOM05D003507 ORTHO05D004324 1.6e-65 253.1 136 89.7
arahy.Tifrunner.gnm1.ann1.TAZB16 Arachis hypogaea HOM05D003507 ORTHO05D004324 1.6e-65 253.1 136 89.7
CDE02G2605 Ceratophyllum demersum HOM05D003507 ORTHO05D004324 1.6e-65 253.1 136 86.0
Rhsim09G0148300 Rhododendron simsii HOM05D003507 ORTHO05D004324 2.1e-65 252.7 136 87.5
CSS0014006 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 2.8e-65 252.3 136 88.2
CSS0018584 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 2.8e-65 252.3 136 88.2
AUR62013829 Chenopodium quinoa HOM05D003507 ORTHO05D004324 2.8e-65 252.3 136 89.0
AUR62036906 Chenopodium quinoa HOM05D003507 ORTHO05D004324 2.8e-65 252.3 136 89.0
RhsimUnG0185700 Rhododendron simsii HOM05D003507 ORTHO05D004324 8.0e-65 250.8 136 87.5
TPR.G38613 Trifolium pratense HOM05D003507 ORTHO05D004324 8.0e-65 250.8 136 86.8
Ah.11g040810 Amaranthus hybridus HOM05D003507 ORTHO05D004324 1.4e-64 250.0 136 88.2
Lalb_Chr02g0152061 Lupinus albus HOM05D003507 ORTHO05D004324 5.2e-64 248.1 136 86.8
SHI08893 Sapria himalayana HOM05D003507 ORTHO05D004324 1.5e-63 246.5 136 86.0
Mapoly0025s0008 Marchantia polymorpha HOM05D003507 ORTHO05D004324 3.7e-62 241.9 136 86.8
AL491U10020 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 1.0e-59 233.8 119 95.8
AagrBONN_evm.TU.Sc2ySwM_117.1947 Anthoceros agrestis HOM05D003507 ORTHO05D004324 5.0e-59 231.5 136 80.9
MBI17_g03745_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 7.3e-58 227.6 136 76.5
Pp3c4_15510 Physcomitrium patens HOM05D003507 ORTHO05D004324 4.7e-57 224.9 138 78.3
SMO334G0124 Selaginella moellendorffii HOM05D003507 ORTHO05D004324 2.3e-56 222.6 137 78.8
BcaNung06834 Brassica carinata HOM05D003507 ORTHO05D004324 4.0e-56 221.9 136 83.1
Aqoxy1G02537 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 5.2e-56 221.5 136 72.8
BcaNung06832 Brassica carinata HOM05D003507 ORTHO05D004324 6.8e-56 221.1 116 92.2
TAR627G0142 Trochodendron aralioides HOM05D003507 ORTHO05D004324 2.0e-55 219.5 136 72.8
vmacro04843 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 1.4e-53 213.4 118 87.3
PSO541G4906 Papaver somniferum HOM05D003507 ORTHO05D004324 1.8e-53 213.0 136 69.9
CBR_g49884 Chara braunii HOM05D003507 ORTHO05D000048 1.7e-51 206.5 136 70.6
CiPaw.14G115300 Carya illinoinensis HOM05D003507 ORTHO05D004324 1.8e-48 196.4 126 77.8
MCO16G042 Micromonas commoda HOM05D003507 ORTHO05D004324 1.3e-43 180.3 136 58.1
Haze_26728 Corylus avellana HOM05D003507 ORTHO05D004324 6.6e-43 177.9 138 62.3
Cre13.g577450 Chlamydomonas reinhardtii HOM05D003507 ORTHO05D004324 2.5e-42 176.0 137 58.4
Cfa022775 Carpinus fangiana HOM05D003507 ORTHO05D004324 1.4e-40 170.2 138 58.0
SMO361G0200 Selaginella moellendorffii HOM05D003507 ORTHO05D004324 3.4e-39 165.6 95 81.1
Lj2C20G5 Lonicera japonica HOM05D003507 ORTHO05D004324 9.9e-39 164.1 81 93.8
MBI17_g46352_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 1.3e-38 163.7 126 63.5
Nitab4.5_0001450g0180 Nicotiana tabacum HOM05D003507 ORTHO05D004324 2.2e-38 162.9 80 93.8
Peaxi162Scf00145g01313 Petunia axillaris HOM05D003507 ORTHO05D004324 2.2e-38 162.9 79 93.7
SEGI_22983 Sequoiadendron giganteum HOM05D003507 ORTHO05D004324 2.9e-38 162.5 80 92.5
Cpa.g.sc2869.2 Carica papaya HOM05D003507 ORTHO05D004324 4.9e-38 161.8 79 94.9
Solyc11g008380.3 Solanum lycopersicum HOM05D003507 ORTHO05D004324 4.9e-38 161.8 80 92.5
CBR_g56910 Chara braunii HOM05D003507 ORTHO05D004324 1.5e-31 140.2 143 47.6
Aqoxy1G02532 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 4.9e-30 135.2 79 73.4
VMungo0251G1768 Vigna mungo HOM05D003507 ORTHO05D004324 7.1e-21 104.8 58 84.5
Lj2A20T45 Lonicera japonica HOM05D003507 ORTHO05D004324 7.8e-20 101.3 58 82.8
ATR0680G388 Amborella trichopoda HOM05D003507 ORTHO05D004324 1.6e-17 93.6 61 68.9
SEGI_18211 Sequoiadendron giganteum HOM05D003507 ORTHO05D004324 3.6e-17 92.4 63 71.4
Pp3s42_220 Physcomitrium patens HOM05D003206 ORTHO05D310700 2.7e-12 76.3 134 32.8
Oeu000789.2 Olea europaea HOM05D003507 ORTHO05D004324 8.7e-11 71.2 40 82.5
HPP92_008470 Vanilla planifolia HOM05D003507 ORTHO05D429279 4.0e-08 62.4 57 54.4


User provided reference genes

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