Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 1.6e-140 502.7 245 100.0
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 9.9e-138 493.4 245 98.0
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 4.9e-137 491.1 245 97.6
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 1.9e-136 489.2 245 97.1
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 7.8e-135 483.8 245 97.1
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 2.6e-130 468.8 245 93.5
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 5.8e-130 467.6 245 92.2
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 2.7e-127 458.8 245 90.6
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 4.6e-127 458.0 245 89.4
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 4.3e-125 451.4 245 87.8
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 9.6e-125 450.3 245 87.3
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 1.6e-124 449.5 245 87.8
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 1.4e-123 446.4 245 87.8
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 3.5e-119 431.8 245 83.3
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 5.6e-109 397.9 245 75.1
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 2.4e-107 392.5 242 76.0
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 9.0e-107 390.6 243 75.7
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 1.2e-106 390.2 243 75.3
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 2.0e-106 389.4 242 74.8
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 3.4e-106 388.7 245 74.7
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 5.8e-106 387.9 242 74.8
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 7.6e-106 387.5 242 75.6
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.3e-105 386.7 243 75.3
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.3e-105 386.7 243 75.3
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 4.9e-105 384.8 245 72.7
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 4.2e-104 381.7 240 73.3
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 5.5e-104 381.3 238 73.5
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 5.5e-104 381.3 242 75.2
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 5.5e-104 381.3 242 73.6
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 7.1e-104 380.9 245 73.1
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 7.1e-104 380.9 245 73.1
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 9.3e-104 380.6 245 72.2
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 9.3e-104 380.6 242 69.8
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 1.2e-103 380.2 245 72.2
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.2e-103 380.2 245 72.2
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 1.6e-103 379.8 242 74.4
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 3.5e-103 378.6 245 72.2
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 6.0e-103 377.9 243 72.0
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 6.0e-103 377.9 245 72.2
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 7.9e-103 377.5 242 72.7
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 1.0e-102 377.1 245 70.2
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 1.0e-102 377.1 245 71.0
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 1.0e-102 377.1 242 69.4
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.8e-102 376.3 242 73.1
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 2.3e-102 375.9 245 70.2
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 3.0e-102 375.6 245 71.0
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 3.9e-102 375.2 242 69.0
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 5.1e-102 374.8 245 72.2
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 8.7e-102 374.0 245 71.4
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 1.9e-101 372.9 245 70.6
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 2.5e-101 372.5 244 73.0
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 3.3e-101 372.1 242 70.2
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 4.3e-101 371.7 243 72.0
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 5.7e-101 371.3 240 71.7
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 7.4e-101 370.9 242 71.9
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 9.6e-101 370.5 243 71.2
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 1.3e-100 370.2 247 71.7
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 1.3e-100 370.2 245 70.6
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 1.3e-100 370.2 243 71.2
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 2.1e-100 369.4 245 69.8
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 3.7e-100 368.6 245 70.2
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 3.7e-100 368.6 261 67.0
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 3.7e-100 368.6 243 70.4
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 4.8e-100 368.2 246 72.4
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 4.8e-100 368.2 273 65.9
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 6.3e-100 367.9 242 71.1
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 1.1e-99 367.1 245 69.8
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 1.1e-99 367.1 242 72.3
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 1.4e-99 366.7 282 64.2
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 2.4e-99 365.9 242 69.8
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 6.9e-99 364.4 246 68.7
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 1.3e-97 360.1 227 73.6
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 8.5e-97 357.5 240 68.8
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 8.5e-97 357.5 241 69.3
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 1.4e-96 356.7 231 71.9
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 3.2e-96 355.5 255 68.6
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 5.5e-96 354.8 275 64.7
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 1.2e-95 353.6 294 58.5
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 1.6e-95 353.2 243 67.5
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 2.7e-95 352.4 243 70.0
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 1.0e-94 350.5 242 66.5
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 3.9e-94 348.6 230 71.3
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 5.1e-94 348.2 242 66.5
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 5.7e-93 344.7 229 69.9
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 5.7e-93 344.7 242 66.1
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 1.1e-91 340.5 242 66.9
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 1.1e-91 340.5 242 65.3
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 2.4e-91 339.3 244 63.9
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 2.2e-89 332.8 245 66.1
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 1.1e-88 330.5 208 72.1
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 1.6e-87 326.6 327 53.8
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 7.9e-87 324.3 282 56.4
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 5.1e-86 321.6 203 74.4
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 1.4e-83 313.5 211 67.8
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 2.4e-83 312.8 204 72.1
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 2.0e-82 309.7 256 57.0
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 1.0e-81 307.4 213 66.7
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 2.1e-79 299.7 298 52.0
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 1.8e-78 296.6 250 54.4
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 3.9e-78 295.4 242 58.7
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 9.7e-77 290.8 242 58.7
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 6.3e-76 288.1 213 66.2
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 2.1e-71 273.1 316 45.6
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 1.3e-65 253.8 257 49.0
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 2.1e-63 246.5 249 51.0
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 1.3e-57 227.3 253 46.2
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 3.0e-54 216.1 251 46.2
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 6.8e-54 214.9 257 44.7
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 7.0e-51 204.9 340 38.8
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.7e-49 200.3 120 76.7
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 3.8e-49 199.1 132 71.2
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 4.3e-48 195.7 121 81.0
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 3.2e-43 179.5 111 73.0
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 6.4e-36 155.2 94 77.7
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.5e-32 144.1 84 71.4
A01p41990 Brassica napus HOM05D005979 ORTHO05D041676 5.2e-22 109.0 179 43.6
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 8.9e-22 108.2 83 59.0
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 8.9e-22 108.2 83 59.0
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 5.8e-21 105.5 57 77.2
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 4.9e-20 102.4 51 94.1
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 2.4e-19 100.1 51 92.2
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 2.4e-19 100.1 51 92.2
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.3e-17 94.4 75 57.3
BolC1t05773H Brassica oleracea HOM05D005979 ORTHO05D007848 3.6e-15 86.3 43 90.7
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 2.4e-14 83.6 70 60.0
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 4.0e-14 82.8 60 60.0
BcaC09g47773 Brassica carinata HOM05D005979 ORTHO05D007848 8.4e-12 75.1 38 89.5
BraA01t04267Z Brassica rapa HOM05D005979 ORTHO05D041676 4.2e-11 72.8 38 86.8
CBR_g27740 Chara braunii HOM05D000738 ORTHO05D000675 1.6e-10 70.9 73 45.2
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 1.4e-06 57.8 73 42.5
PRCOL_00006618 Prasinoderma coloniale HOM05D000738 ORTHO05D000675 3.1e-06 56.6 70 40.0


User provided reference genes

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