Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1651.7 915 100.0
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 0.0e+00 1563.1 924 90.8
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1557.7 917 91.3
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 0.0e+00 1548.9 917 90.9
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 0.0e+00 1520.4 913 88.2
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 0.0e+00 1517.3 913 87.6
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 0.0e+00 1516.5 916 89.5
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 0.0e+00 1513.0 913 89.0
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 0.0e+00 1504.2 917 87.6
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 0.0e+00 1431.4 912 84.8
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 0.0e+00 1373.6 810 90.6
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 0.0e+00 1373.6 810 90.6
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 0.0e+00 1316.2 910 78.8
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 0.0e+00 1228.4 840 75.4
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 0.0e+00 1222.2 892 72.6
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 0.0e+00 1220.7 906 71.3
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 0.0e+00 1219.1 906 71.6
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 0.0e+00 1216.1 890 70.1
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1212.6 845 74.2
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 0.0e+00 1212.2 838 74.0
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1209.1 843 75.8
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 0.0e+00 1207.2 843 74.0
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 0.0e+00 1206.4 840 76.1
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 0.0e+00 1203.7 839 72.9
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1200.3 841 74.8
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 0.0e+00 1200.3 898 71.4
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 0.0e+00 1195.3 882 69.0
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 0.0e+00 1193.3 836 73.0
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 0.0e+00 1192.6 880 73.0
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 0.0e+00 1191.0 896 73.0
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 0.0e+00 1191.0 835 73.3
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 0.0e+00 1189.9 871 72.3
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1189.1 887 71.8
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 0.0e+00 1188.3 902 71.1
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 0.0e+00 1186.8 833 73.3
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 0.0e+00 1186.4 900 69.4
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1185.2 874 73.7
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1184.1 886 71.8
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 0.0e+00 1182.5 881 74.6
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 0.0e+00 1181.0 887 70.8
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 0.0e+00 1181.0 907 67.5
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1180.6 836 74.2
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1179.9 886 71.7
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1179.5 877 72.5
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1177.9 876 72.8
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1176.4 842 73.3
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1175.6 869 73.4
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 0.0e+00 1175.2 887 71.8
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1175.2 893 71.3
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 0.0e+00 1174.5 854 69.3
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 0.0e+00 1173.7 850 73.1
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 0.0e+00 1172.1 875 71.8
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 0.0e+00 1171.8 881 70.0
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 0.0e+00 1171.8 834 73.7
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 0.0e+00 1169.8 876 69.1
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 0.0e+00 1169.5 889 69.6
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 0.0e+00 1168.3 889 69.5
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 0.0e+00 1166.8 899 68.7
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 0.0e+00 1165.2 903 67.9
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1164.1 842 74.0
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 0.0e+00 1163.3 872 71.2
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 0.0e+00 1162.5 836 72.0
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 0.0e+00 1157.1 842 72.8
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 0.0e+00 1154.8 893 69.7
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1154.4 871 69.7
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 0.0e+00 1154.4 887 70.0
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1148.3 845 72.4
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 0.0e+00 1127.9 886 69.2
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 0.0e+00 1112.8 895 64.2
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 0.0e+00 1112.1 844 70.0
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 0.0e+00 1099.3 830 68.2
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1094.0 898 63.1
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1077.4 872 64.3
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 0.0e+00 1076.6 837 63.9
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 1.9e-311 1072.4 838 66.1
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 3.1e-309 1065.1 842 68.5
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 2.0e-308 1062.4 824 64.1
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 3.4e-308 1061.6 843 68.2
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 6.4e-307 1057.4 835 65.7
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 3.2e-306 1055.0 900 64.2
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 4.1e-306 1054.7 841 63.5
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 2.1e-305 1052.4 920 62.6
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 4.6e-305 1051.2 839 65.9
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 7.1e-298 1027.3 894 62.0
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 5.9e-260 901.4 852 59.2
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 1.1e-253 880.6 629 72.8
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 2.2e-235 819.7 851 53.5
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 8.5e-235 817.8 624 71.3
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 2.8e-230 802.7 569 71.4
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 9.2e-221 771.2 477 78.0
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 2.6e-215 753.1 829 49.5
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 5.7e-215 751.9 504 73.4
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 7.5e-207 724.9 536 74.3
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 7.3e-202 708.4 835 46.8
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 9.5e-202 708.0 536 67.7
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 6.6e-187 658.7 499 69.9
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 5.2e-184 649.0 833 47.8
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 7.6e-175 618.6 578 60.6
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 2.1e-169 600.5 848 40.3
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 4.5e-159 566.2 471 68.8
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 1.2e-148 531.6 715 41.1
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 8.2e-145 518.8 429 65.0
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 4.2e-125 453.4 370 70.3
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 4.1e-96 357.1 208 83.7
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 1.5e-90 338.6 310 68.1
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 7.8e-87 326.2 282 65.2
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 2.3e-83 314.7 219 69.9
CiPaw.07G076900 Carya illinoinensis HOM05D002281 ORTHO05D006774 8.9e-83 312.8 190 81.6
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 9.5e-77 292.7 291 55.3
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 8.4e-73 279.6 259 58.3
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 1.2e-71 275.8 261 57.5
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 2.1e-68 265.0 196 67.9
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 1.4e-67 262.3 260 56.2
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.4e-67 262.3 227 60.4
AL685U10020 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 1.7e-57 228.8 137 86.9
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 1.7e-49 202.2 164 64.6
Actinidia39977 Actinidia chinensis HOM05D002281 ORTHO05D006774 9.3e-48 196.4 144 67.4
ClCG03G011370 Citrullus lanatus HOM05D002281 ORTHO05D006774 3.0e-46 191.4 111 82.0
vmacro19968 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 3.3e-45 188.0 113 77.0
Hma1.2p1_0463F.1_g158160 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 7.1e-40 170.2 108 74.1
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 2.5e-37 161.8 197 47.7
QL03p032920 Quercus lobata HOM05D002281 ORTHO05D006774 5.7e-37 160.6 99 82.8
QL03p033074 Quercus lobata HOM05D002281 ORTHO05D006774 1.5e-34 152.5 91 85.7
Cpa.g.sc51.35 Carica papaya HOM05D002281 ORTHO05D006774 1.1e-32 146.4 87 80.5
Solyc01g015200.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.4e-22 112.8 167 41.3
BolC1t05755H Brassica oleracea HOM05D002281 ORTHO05D006774 3.0e-22 111.7 69 88.4
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 3.7e-20 104.8 82 65.9
Solyc01g013970.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.4e-19 102.8 88 56.8
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 2.0e-18 99.0 61 77.0
Solyc01g014000.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.5e-16 92.8 74 62.2
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.6e-15 89.4 53 81.1
Actinidia39976 Actinidia chinensis HOM05D002281 ORTHO05D006774 6.7e-14 84.0 59 74.6
CDE08G0752 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 4.4e-13 81.3 56 67.9
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 3.7e-12 78.2 49 77.6
BraA01t04528Z Brassica rapa HOM05D002281 ORTHO05D006774 1.6e-10 72.8 49 79.6
BolC1t05758H Brassica oleracea HOM05D002281 ORTHO05D006774 7.7e-10 70.5 42 83.3
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 2.7e-07 62.0 200 25.5
TPR.G31597 Trifolium pratense HOM05D002281 ORTHO05D006774 3.6e-07 61.6 40 67.5
FvH4_6g01352 Fragaria vesca HOM05D002281 ORTHO05D006774 6.8e-06 57.4 40 65.0


User provided reference genes

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