Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung04497 Brassica carinata HOM05D001993 ORTHO05D014738 9.7e-52 206.5 99 100.0
BcaNung04500 Brassica carinata HOM05D001993 ORTHO05D014738 9.7e-52 206.5 99 100.0
BcaNung04502 Brassica carinata HOM05D001993 ORTHO05D014738 9.7e-52 206.5 99 100.0
C09p11950 Brassica napus HOM05D001993 ORTHO05D014738 3.5e-33 144.8 69 98.6
AL2G40910 Arabidopsis lyrata HOM05D001993 ORTHO05D004040 4.3e-15 84.7 45 84.4
CARHR074080 Cardamine hirsuta HOM05D001993 ORTHO05D004040 4.3e-15 84.7 45 84.4
Sp5g35230 Schrenkiella parvula HOM05D001993 ORTHO05D004040 5.6e-15 84.3 45 84.4
BolC9t54083H Brassica oleracea HOM05D001993 ORTHO05D014738 2.8e-14 82.0 39 100.0
Carub.0002s2700 Capsella rubella HOM05D001993 ORTHO05D004040 2.8e-14 82.0 45 82.2
BcaB05g25259 Brassica carinata HOM05D001993 ORTHO05D004040 1.1e-13 80.1 45 80.0
CARHR205690 Cardamine hirsuta HOM05D001993 ORTHO05D004040 8.9e-13 77.0 45 75.6
BcaC03g15954 Brassica carinata HOM05D001993 ORTHO05D004040 1.7e-11 72.8 53 67.9
DCAR_021360 Daucus carota HOM05D001993 ORTHO05D004040 2.9e-11 72.0 47 68.1
A02p23460 Brassica napus HOM05D001993 ORTHO05D004040 4.9e-11 71.2 53 66.0
BraA02t07338Z Brassica rapa HOM05D001993 ORTHO05D004040 4.9e-11 71.2 53 66.0
CARHR125330 Cardamine hirsuta HOM05D001993 ORTHO05D004040 4.9e-11 71.2 47 68.1
AT1G80560 Arabidopsis thaliana HOM05D001993 ORTHO05D004040 6.4e-11 70.9 47 68.1
CSS0044698 Camellia sinensis var. sinensis HOM05D001993 ORTHO05D004040 6.4e-11 70.9 47 68.1
Carub.0002s2699 Capsella rubella HOM05D001993 ORTHO05D004040 6.4e-11 70.9 47 68.1
Thhalv10018649m.g Eutrema salsugineum HOM05D001993 ORTHO05D004040 6.4e-11 70.9 47 68.1
Hma1.2p1_0135F.1_g061690 Hydrangea macrophylla HOM05D001993 ORTHO05D004040 6.4e-11 70.9 47 68.1
TWI18G1017 Tripterygium wilfordii HOM05D001993 ORTHO05D004040 6.4e-11 70.9 47 68.1
Aqoxy1G01546 Aquilegia oxysepala HOM05D001993 ORTHO05D004040 8.3e-11 70.5 47 66.0
MSTRG.22778 Avicennia marina HOM05D001993 ORTHO05D004040 8.3e-11 70.5 47 68.1
Nn8g39686 Nelumbo nucifera HOM05D001993 ORTHO05D004040 8.3e-11 70.5 47 68.1
Nitab4.5_0002481g0070 Nicotiana tabacum HOM05D001993 ORTHO05D004040 8.3e-11 70.5 62 51.6
TAR625G0460 Trochodendron aralioides HOM05D001993 ORTHO05D004040 8.3e-11 70.5 47 66.0
Dinv23318 Davidia involucrata HOM05D001993 ORTHO05D004040 1.1e-10 70.1 47 68.1
Nitab4.5_0000315g0220 Nicotiana tabacum HOM05D001993 ORTHO05D004040 1.1e-10 70.1 62 51.6
BraA07t32014Z Brassica rapa HOM05D001993 ORTHO05D004040 1.4e-10 69.7 47 66.0
CANSAT78G2160 Cannabis sativa HOM05D001993 ORTHO05D004040 1.4e-10 69.7 47 68.1
Dinv38158 Davidia involucrata HOM05D001993 ORTHO05D004040 1.4e-10 69.7 47 68.1
Sp5g35220 Schrenkiella parvula HOM05D001993 ORTHO05D004040 1.4e-10 69.7 47 66.0
AL2G40900 Arabidopsis lyrata HOM05D001993 ORTHO05D004040 1.9e-10 69.3 47 66.0
A07p45110 Brassica napus HOM05D001993 ORTHO05D004040 1.9e-10 69.3 47 66.0
C02p06590 Brassica napus HOM05D001993 ORTHO05D004040 1.9e-10 69.3 47 63.8
BolC2t06605H Brassica oleracea HOM05D001993 ORTHO05D004040 1.9e-10 69.3 47 63.8
A02p23450 Brassica napus HOM05D001993 ORTHO05D004040 2.4e-10 68.9 47 66.0
C02p37150 Brassica napus HOM05D001993 ORTHO05D004040 2.4e-10 68.9 47 66.0
BolC2t09727H Brassica oleracea HOM05D001993 ORTHO05D004040 2.4e-10 68.9 47 66.0
BraA02t07337Z Brassica rapa HOM05D001993 ORTHO05D004040 2.4e-10 68.9 47 66.0
CiPaw.01G251500 Carya illinoinensis HOM05D001993 ORTHO05D004040 2.4e-10 68.9 48 64.6
BcaC03g15953 Brassica carinata HOM05D001993 ORTHO05D004040 3.2e-10 68.6 47 63.8
C06p53940 Brassica napus HOM05D001993 ORTHO05D004040 3.2e-10 68.6 47 63.8
BolC6t40408H Brassica oleracea HOM05D001993 ORTHO05D004040 3.2e-10 68.6 47 63.8
Cc11_g03270 Coffea canephora HOM05D001993 ORTHO05D004040 3.2e-10 68.6 47 66.0
Sabra01G0154500 Salix brachista HOM05D001993 ORTHO05D004040 3.2e-10 68.6 47 68.1
Aqoxy6G02753 Aquilegia oxysepala HOM05D001993 ORTHO05D004040 4.1e-10 68.2 47 63.8
BcaB05g25258 Brassica carinata HOM05D001993 ORTHO05D004040 4.1e-10 68.2 47 63.8
Ciclev10025744m.g Citrus clementina HOM05D001993 ORTHO05D004040 4.1e-10 68.2 47 68.1
Lj1A617G82 Lonicera japonica HOM05D001993 ORTHO05D004040 4.1e-10 68.2 62 54.8
Manes.11G062800 Manihot esculenta HOM05D001993 ORTHO05D004040 4.1e-10 68.2 47 66.0
Aa31LG4G830 Aethionema arabicum HOM05D001993 ORTHO05D004040 5.4e-10 67.8 47 66.0
Aa31LG4G840 Aethionema arabicum HOM05D002499 ORTHO05D004040 5.4e-10 67.8 47 66.0
Carub.0006s1240 Capsella rubella HOM05D001993 ORTHO05D004040 5.4e-10 67.8 47 61.7
Cpa.g.sc52.151 Carica papaya HOM05D001993 ORTHO05D004040 5.4e-10 67.8 47 66.0
Migut.I00729 Erythranthe guttata HOM05D001993 ORTHO05D004040 5.4e-10 67.8 47 66.0
HanXRQChr06g0181061 Helianthus annuus HOM05D001993 ORTHO05D004040 5.4e-10 67.8 47 66.0
HanXRQChr16g0510241 Helianthus annuus HOM05D001993 ORTHO05D004040 5.4e-10 67.8 47 66.0
Phvul.005G181600 Phaseolus vulgaris HOM05D001993 ORTHO05D004040 5.4e-10 67.8 60 56.7
Rhsim08G0209300 Rhododendron simsii HOM05D001993 ORTHO05D004040 5.4e-10 67.8 47 66.0
Sp6g29830 Schrenkiella parvula HOM05D001993 ORTHO05D004040 5.4e-10 67.8 47 61.7
SpUn0049_0030 Schrenkiella parvula HOM05D001993 ORTHO05D004040 5.4e-10 67.8 47 61.7
vmacro19031 Vaccinium macrocarpon HOM05D001993 ORTHO05D004040 5.4e-10 67.8 47 66.0
Atru.chr13.1967 Acer truncatum HOM05D001993 ORTHO05D004040 7.1e-10 67.4 47 63.8
AT5G14200 Arabidopsis thaliana HOM05D001993 ORTHO05D004040 7.1e-10 67.4 47 63.8
A02p02370 Brassica napus HOM05D001993 ORTHO05D004040 7.1e-10 67.4 47 61.7
BraA02t05207Z Brassica rapa HOM05D001993 ORTHO05D004040 7.1e-10 67.4 47 61.7
Haze_16625 Corylus avellana HOM05D001993 ORTHO05D004040 7.1e-10 67.4 47 63.8
Eucgr.F03933 Eucalyptus grandis HOM05D001993 ORTHO05D004040 7.1e-10 67.4 47 63.8
RcHm_v2.0_Chr2g0133821 Rosa chinensis HOM05D001993 ORTHO05D004040 7.1e-10 67.4 47 66.0
VMungo1080G0486 Vigna mungo HOM05D001993 ORTHO05D004040 7.1e-10 67.4 45 68.9
GSVIVG01023010001 Vitis vinifera HOM05D001993 ORTHO05D004040 7.1e-10 67.4 47 66.0
AL1G50860 Arabidopsis lyrata HOM05D001993 ORTHO05D004040 9.2e-10 67.0 47 66.0
BcaC01g01608 Brassica carinata HOM05D009193 ORTHO05D027771 9.2e-10 67.0 38 84.2
CAN.G610.41 Capsicum annuum HOM05D001993 ORTHO05D004040 9.2e-10 67.0 47 63.8
PSO478G5069 Papaver somniferum HOM05D001993 ORTHO05D004040 9.2e-10 67.0 47 63.8
PSO541G0229 Papaver somniferum HOM05D001993 ORTHO05D004040 9.2e-10 67.0 47 63.8
PSO675G4738 Papaver somniferum HOM05D001993 ORTHO05D004040 9.2e-10 67.0 47 63.8
Sc11g0002740 Simmondsia chinensis HOM05D001993 ORTHO05D004040 9.2e-10 67.0 47 66.0
unitig_62.g23356 Utricularia gibba HOM05D001993 ORTHO05D004040 9.2e-10 67.0 47 63.8
vmacro06416 Vaccinium macrocarpon HOM05D001993 ORTHO05D004040 9.2e-10 67.0 47 66.0
Actinidia08952 Actinidia chinensis HOM05D001993 ORTHO05D004040 1.2e-09 66.6 47 63.8
AL6G24870 Arabidopsis lyrata HOM05D001993 ORTHO05D004040 1.2e-09 66.6 47 59.6
AT1G31180 Arabidopsis thaliana HOM05D001993 ORTHO05D004040 1.2e-09 66.6 47 63.8
Prupe.3G094300 Prunus persica HOM05D001993 ORTHO05D004040 1.2e-09 66.6 45 66.7
PGR102G0990 Punica granatum HOM05D001993 ORTHO05D004040 1.2e-09 66.6 47 63.8
THA.LOC104808191 Tarenaya hassleriana HOM05D001993 ORTHO05D004040 1.2e-09 66.6 47 66.0
CSS0006698 Camellia sinensis var. sinensis HOM05D001993 ORTHO05D004040 1.6e-09 66.2 47 63.8
CSS0034242 Camellia sinensis var. sinensis HOM05D001993 ORTHO05D004040 1.6e-09 66.2 47 63.8
Cfa001917 Carpinus fangiana HOM05D001993 ORTHO05D004040 1.6e-09 66.2 47 63.8
Lsat_1_v5_gn_8_105360 Lactuca sativa HOM05D001993 ORTHO05D004040 1.6e-09 66.2 45 66.7
MD17G1218700 Malus domestica HOM05D001993 ORTHO05D004040 1.6e-09 66.2 45 66.7
Thecc.06G035700 Theobroma cacao HOM05D001993 ORTHO05D004040 1.6e-09 66.2 47 61.7
TAR636G1963 Trochodendron aralioides HOM05D001993 ORTHO05D004040 1.6e-09 66.2 47 61.7
BolC3t19674H Brassica oleracea HOM05D001993 ORTHO05D017704 2.1e-09 65.9 36 86.1
Oeu055805.1 Olea europaea HOM05D001993 ORTHO05D004040 2.1e-09 65.9 47 63.8
Potri.001G185600 Populus trichocarpa HOM05D001993 ORTHO05D004040 2.1e-09 65.9 47 63.8
TAR636G1834 Trochodendron aralioides HOM05D001993 ORTHO05D004040 2.1e-09 65.9 46 63.0
Actinidia03218 Actinidia chinensis HOM05D001993 ORTHO05D017206 2.7e-09 65.5 45 64.4
COL.COLO4_10077 Corchorus olitorius HOM05D001993 ORTHO05D004040 2.7e-09 65.5 47 61.7
SalBow7G1960 Salvia bowleyana HOM05D001993 ORTHO05D004040 2.7e-09 65.5 45 64.4
CDE05G0929 Ceratophyllum demersum HOM05D001993 ORTHO05D004040 3.5e-09 65.1 75 45.3
Gorai.011G085100 Gossypium raimondii HOM05D001993 ORTHO05D004040 3.5e-09 65.1 47 61.7
SGA_v2.0_scaffold37G14738 Striga asiatica HOM05D001993 ORTHO05D004040 3.5e-09 65.1 45 66.7
Zm00001eb076030 Zea mays HOM05D001993 ORTHO05D004040 3.5e-09 65.1 45 64.4
MELO3C017853.2 Cucumis melo HOM05D001993 ORTHO05D004040 4.6e-09 64.7 47 59.6
Duzib235G0702 Durio zibethinus HOM05D001993 ORTHO05D004040 4.6e-09 64.7 47 59.6
Thhalv10013695m.g Eutrema salsugineum HOM05D001993 ORTHO05D004040 4.6e-09 64.7 45 62.2
MBI02_g44629_MAGBIO Magnolia biondii HOM05D001993 ORTHO05D004040 4.6e-09 64.7 47 61.7
PSO017G5288 Papaver somniferum HOM05D001993 ORTHO05D004040 4.6e-09 64.7 47 61.7
Solyc05g009030.4 Solanum lycopersicum HOM05D001993 ORTHO05D004040 4.6e-09 64.7 47 61.7
Sopen05g004770 Solanum pennellii HOM05D001993 ORTHO05D004040 4.6e-09 64.7 47 61.7
CARHR199140 Cardamine hirsuta HOM05D001993 ORTHO05D004040 6.0e-09 64.3 47 59.6
CsaV3_4G001800 Cucumis sativus L. HOM05D001993 ORTHO05D004040 6.0e-09 64.3 47 59.6
ECA240G4532 Erigeron canadensis HOM05D001993 ORTHO05D004040 7.8e-09 63.9 45 64.4
FvH4_1g23550 Fragaria vesca HOM05D001993 ORTHO05D004040 7.8e-09 63.9 47 61.7
FvH4_2g04971 Fragaria vesca HOM05D001993 ORTHO05D004040 7.8e-09 63.9 47 61.7
FAN23G0437 Fragaria x ananassa HOM05D001993 ORTHO05D004040 7.8e-09 63.9 47 61.7
Sed0011728 Sechium edule HOM05D001993 ORTHO05D004040 7.8e-09 63.9 47 59.6
Lalb_Chr24g0395371 Lupinus albus HOM05D001993 ORTHO05D004040 1.0e-08 63.5 45 62.2
QL05p033532 Quercus lobata HOM05D001993 ORTHO05D004040 1.0e-08 63.5 47 61.7
Sed0006349 Sechium edule HOM05D001993 ORTHO05D004040 1.0e-08 63.5 47 57.4
PGSC0003DMG400030577 Solanum tuberosum HOM05D001993 ORTHO05D004040 1.0e-08 63.5 47 61.7
THA.LOC104812454 Tarenaya hassleriana HOM05D001993 ORTHO05D004040 1.0e-08 63.5 47 63.8
Zm00001eb434270 Zea mays HOM05D001993 ORTHO05D004040 1.0e-08 63.5 45 62.2
arahy.Tifrunner.gnm1.ann1.9XJ6IP Arachis hypogaea HOM05D001993 ORTHO05D004040 1.7e-08 62.8 47 57.4
arahy.Tifrunner.gnm1.ann1.MFGQ7M Arachis hypogaea HOM05D001993 ORTHO05D004040 1.7e-08 62.8 47 57.4
arahy.Tifrunner.gnm1.ann1.S9NP0T Arachis hypogaea HOM05D001993 ORTHO05D004040 1.7e-08 62.8 47 57.4
ECA232G4796 Erigeron canadensis HOM05D001993 ORTHO05D004040 1.7e-08 62.8 45 64.4
Gohir.A10G072700 Gossypium hirsutum HOM05D001993 ORTHO05D004040 1.7e-08 62.8 47 59.6
Medtr2g104610 Medicago truncatula HOM05D001993 ORTHO05D004040 1.7e-08 62.8 45 60.0
Os03g0655700 Oryza sativa ssp. japonica HOM05D001993 ORTHO05D004040 1.7e-08 62.8 45 62.2
ATR0165G046 Amborella trichopoda HOM05D001993 ORTHO05D004040 2.3e-08 62.4 45 60.0
arahy.Tifrunner.gnm1.ann1.G3W1SC Arachis hypogaea HOM05D001993 ORTHO05D004040 2.3e-08 62.4 47 57.4
arahy.Tifrunner.gnm1.ann1.WS718B Arachis hypogaea HOM05D001993 ORTHO05D014738 2.3e-08 62.4 47 57.4
C03p73820 Brassica napus HOM05D001993 ORTHO05D017704 2.3e-08 62.4 36 83.3
Ca_01033_v3 Cicer arietinum L. HOM05D001993 ORTHO05D004040 2.3e-08 62.4 45 60.0
Ca_30253_v3 Cicer arietinum L. HOM05D001993 ORTHO05D004040 2.3e-08 62.4 45 60.0
Peaxi162Scf00045g02262 Petunia axillaris HOM05D001993 ORTHO05D004040 2.3e-08 62.4 62 48.4
TPR.G19151 Trifolium pratense HOM05D001993 ORTHO05D004040 2.3e-08 62.4 45 60.0
arahy.Tifrunner.gnm1.ann1.GNX4LQ Arachis hypogaea HOM05D001993 ORTHO05D017206 3.9e-08 61.6 47 57.4
FAN20G0035 Fragaria x ananassa HOM05D001993 ORTHO05D004040 5.1e-08 61.2 47 59.6
Glyma.15G005400 Glycine max HOM05D001993 ORTHO05D004040 5.1e-08 61.2 47 61.7
Ah.01g004830 Amaranthus hybridus HOM05D001993 ORTHO05D004040 6.6e-08 60.8 47 61.7
Gohir.D10G078300 Gossypium hirsutum HOM05D001993 ORTHO05D004040 6.6e-08 60.8 47 59.6
Lalb_Chr14g0373941 Lupinus albus HOM05D001993 ORTHO05D004040 6.6e-08 60.8 45 60.0
Aa31LG11G14990 Aethionema arabicum HOM05D001993 ORTHO05D004040 8.6e-08 60.5 45 57.8
CDE02G2027 Ceratophyllum demersum HOM05D001993 ORTHO05D004040 8.6e-08 60.5 47 57.4
Glyma.11G079000 Glycine max HOM05D001993 ORTHO05D004040 1.1e-07 60.1 45 60.0
Glyma.13G367900 Glycine max HOM05D001993 ORTHO05D004040 1.1e-07 60.1 45 60.0
Psat5g304040 Pisum sativum HOM05D001993 ORTHO05D004040 1.1e-07 60.1 45 55.6
ClCG07G012340 Citrullus lanatus HOM05D001993 ORTHO05D004040 1.9e-07 59.3 47 57.4
HPP92_009455 Vanilla planifolia HOM05D001993 ORTHO05D004040 1.9e-07 59.3 47 59.6
AUR62011462 Chenopodium quinoa HOM05D001993 ORTHO05D004040 2.5e-07 58.9 47 59.6
AUR62016593 Chenopodium quinoa HOM05D001993 ORTHO05D004040 2.5e-07 58.9 47 59.6
SEGI_15241 Sequoiadendron giganteum HOM05D001993 ORTHO05D004040 3.3e-07 58.5 47 53.2
SMO201G0043 Selaginella moellendorffii HOM05D001993 ORTHO05D004040 4.3e-07 58.2 45 55.6
EL10Ac9g21856 Beta vulgaris HOM05D001993 ORTHO05D004040 5.6e-07 57.8 47 57.4
C02p37160 Brassica napus HOM05D001993 ORTHO05D004040 5.6e-07 57.8 34 79.4
BolC2t09728H Brassica oleracea HOM05D001993 ORTHO05D004040 5.6e-07 57.8 34 79.4
Lj3g0004208 Lotus japonicus HOM05D001993 ORTHO05D004040 7.3e-07 57.4 47 53.2
AagrBONN_evm.TU.Sc2ySwM_228.2916 Anthoceros agrestis HOM05D001993 ORTHO05D004040 1.6e-06 56.2 45 55.6
AT1G80555 Arabidopsis thaliana HOM05D001993 ORTHO05D014738 2.8e-06 55.5 34 73.5
Hund00508 Selenicereus undatus HOM05D001993 ORTHO05D004040 3.6e-06 55.1 45 57.8


User provided reference genes

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