Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 1.2e-112 409.8 198 100.0
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 1.2e-101 373.2 197 89.3
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 1.0e-100 370.2 197 88.3
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 1.5e-99 366.3 197 87.8
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 1.5e-99 366.3 197 87.8
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 1.5e-99 366.3 197 87.8
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 3.0e-84 315.5 197 76.6
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 2.9e-79 298.9 197 73.6
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 4.6e-77 291.6 197 69.0
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 1.1e-73 280.4 198 68.2
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 1.9e-70 269.6 197 68.5
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 4.2e-70 268.5 197 65.5
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 1.2e-69 266.9 197 66.5
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 2.1e-58 229.6 197 55.8
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.1e-57 227.3 197 55.3
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 2.3e-52 209.5 198 51.0
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 1.9e-51 206.5 197 46.7
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 1.9e-51 206.5 200 50.0
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 2.5e-51 206.1 197 47.2
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 9.7e-51 204.1 199 49.2
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 3.7e-50 202.2 197 46.2
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 6.3e-50 201.4 200 47.5
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 1.4e-49 200.3 200 47.0
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 1.8e-49 199.9 198 49.0
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 2.4e-49 199.5 105 86.7
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 1.5e-48 196.8 197 44.7
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 7.7e-48 194.5 198 47.5
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 1.7e-47 193.4 198 49.0
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 8.5e-47 191.0 200 49.5
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 1.1e-46 190.7 200 45.5
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 1.4e-46 190.3 197 46.7
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 1.4e-46 190.3 199 44.7
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 1.9e-46 189.9 197 46.2
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 2.5e-46 189.5 197 45.2
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 2.5e-46 189.5 198 44.9
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 4.2e-46 188.7 196 43.4
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 5.5e-46 188.3 196 43.4
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 9.4e-46 187.6 201 47.3
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 1.2e-45 187.2 197 42.6
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 1.2e-45 187.2 200 45.5
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.2e-45 187.2 200 45.5
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.2e-45 187.2 200 45.5
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 1.6e-45 186.8 196 43.4
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 2.1e-45 186.4 197 43.1
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 2.1e-45 186.4 197 44.2
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 2.1e-45 186.4 201 45.8
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 2.1e-45 186.4 198 44.4
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.6e-45 185.7 200 45.0
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 3.6e-45 185.7 200 45.0
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 4.6e-45 185.3 199 44.7
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 4.6e-45 185.3 199 45.2
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 6.1e-45 184.9 197 45.2
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 7.9e-45 184.5 198 43.4
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 7.9e-45 184.5 197 42.6
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 1.0e-44 184.1 197 41.6
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 1.4e-44 183.7 199 46.2
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 1.8e-44 183.3 196 43.4
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 3.0e-44 182.6 198 46.0
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 6.7e-44 181.4 199 44.7
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 6.7e-44 181.4 196 40.8
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 1.1e-43 180.6 197 43.1
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 3.3e-43 179.1 201 44.8
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.3e-43 179.1 197 41.6
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.3e-43 179.1 197 41.6
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 5.7e-43 178.3 197 45.2
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 5.7e-43 178.3 200 43.5
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 9.7e-43 177.6 197 44.7
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 2.2e-42 176.4 197 44.2
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 2.8e-42 176.0 200 42.5
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 3.7e-42 175.6 201 41.3
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.1e-41 174.1 197 43.7
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 1.1e-41 174.1 196 41.3
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 1.8e-41 173.3 197 42.6
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 2.4e-41 172.9 201 42.8
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 2.4e-41 172.9 193 45.1
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 4.1e-41 172.2 197 43.1
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 2.0e-40 169.9 197 43.1
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 7.7e-40 167.9 198 43.4
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 5.0e-39 165.2 196 38.8
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 1.1e-38 164.1 200 41.5
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 2.5e-38 162.9 199 40.7
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 4.2e-38 162.2 198 39.9
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 7.2e-38 161.4 197 40.6
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 3.6e-37 159.1 197 40.6
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 3.9e-36 155.6 197 41.1
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.0e-35 153.3 196 38.8
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.6e-35 152.9 196 37.8
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 2.6e-35 152.9 197 40.6
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 9.7e-35 151.0 197 40.1
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 1.7e-34 150.2 197 42.1
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 1.4e-33 147.1 195 40.0
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 1.4e-33 147.1 197 41.1
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 2.0e-32 143.3 153 44.4
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 2.2e-31 139.8 210 37.6
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 3.8e-31 139.0 197 38.6
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 8.5e-31 137.9 177 47.5
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 2.5e-30 136.3 169 37.3
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 4.2e-30 135.6 199 35.2
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 4.2e-30 135.6 197 36.5
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.7e-29 132.1 143 46.9
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 1.0e-28 131.0 165 38.8
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 7.5e-27 124.8 196 34.2
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 5.9e-24 115.2 196 32.1
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 1.0e-23 114.4 197 32.5
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 2.2e-23 113.2 196 33.2
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 3.8e-23 112.5 109 47.7
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 1.5e-22 110.5 106 44.3
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 2.3e-20 103.2 98 54.1
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 1.2e-19 100.9 109 42.2
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 2.2e-18 96.7 216 27.3
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 1.1e-17 94.4 207 30.0
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.8e-17 93.6 105 42.9
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 3.5e-16 89.4 211 28.0
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 4.2e-14 82.4 195 27.7
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 6.1e-13 78.6 195 25.1
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 6.8e-12 75.1 36 94.4
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.8e-12 75.1 89 43.8
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 6.8e-12 75.1 214 24.3
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 8.8e-12 74.7 56 53.6
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 1.5e-11 73.9 198 29.3
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 2.8e-10 69.7 58 46.6
MCO04G551 Micromonas commoda HOM05D002338 ORTHO05D006102 2.0e-08 63.5 219 22.8
FAN10G3983 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.7e-08 63.2 53 56.6


User provided reference genes

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