Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03615 Brassica carinata HOM05D001312 ORTHO05D001832 2.8e-38 161.4 77 100.0
BcaNung01192 Brassica carinata HOM05D001312 ORTHO05D001832 9.6e-31 136.3 65 100.0
BolC2t06519H Brassica oleracea HOM05D001312 ORTHO05D001832 9.6e-31 136.3 65 100.0
A02p01520 Brassica napus HOM05D001312 ORTHO05D001832 2.8e-30 134.8 65 98.5
BraA02t05132Z Brassica rapa HOM05D001312 ORTHO05D001832 2.8e-30 134.8 65 98.5
C02p05740 Brassica napus HOM05D001312 ORTHO05D001832 4.0e-29 131.0 65 95.4
BcaNung03620 Brassica carinata HOM05D001312 ORTHO05D001832 2.2e-27 125.2 65 90.8
Sp6g31240 Schrenkiella parvula HOM05D001312 ORTHO05D001832 2.2e-27 125.2 65 90.8
Thhalv10012427m.g Eutrema salsugineum HOM05D001312 ORTHO05D001832 2.5e-26 121.7 65 89.2
Carub.0006s1090 Capsella rubella HOM05D001312 ORTHO05D001832 7.9e-25 116.7 65 83.1
AL6G23200 Arabidopsis lyrata HOM05D001312 ORTHO05D001832 1.8e-24 115.5 65 83.1
BcaB08g37000 Brassica carinata HOM05D001312 ORTHO05D001832 3.9e-24 114.4 65 84.6
CARHR200700 Cardamine hirsuta HOM05D001312 ORTHO05D001832 5.1e-24 114.0 65 84.6
A03p05600 Brassica napus HOM05D001312 ORTHO05D001832 8.7e-24 113.2 65 83.1
C03p06550 Brassica napus HOM05D001312 ORTHO05D001832 8.7e-24 113.2 65 83.1
BolC3t13155H Brassica oleracea HOM05D001312 ORTHO05D001832 8.7e-24 113.2 65 83.1
BraA03t09897Z Brassica rapa HOM05D001312 ORTHO05D001832 8.7e-24 113.2 65 83.1
AT5G12400 Arabidopsis thaliana HOM05D001312 ORTHO05D001832 1.5e-23 112.5 65 80.0
BcaB01g05404 Brassica carinata HOM05D001312 ORTHO05D001832 3.3e-23 111.3 65 81.5
A10p25420 Brassica napus HOM05D001312 ORTHO05D001832 9.6e-23 109.8 65 78.5
BraA10t44606Z Brassica rapa HOM05D001312 ORTHO05D001832 9.6e-23 109.8 65 78.5
BolC9t59283H Brassica oleracea HOM05D001312 ORTHO05D001832 2.1e-22 108.6 65 78.5
C09p64490 Brassica napus HOM05D001312 ORTHO05D001832 6.3e-22 107.1 65 76.9
Aa31LG3G14830 Aethionema arabicum HOM05D001312 ORTHO05D001832 3.4e-20 101.3 65 70.8
THA.LOC104811188 Tarenaya hassleriana HOM05D001312 ORTHO05D001832 1.1e-15 86.3 65 56.9
MD11G1187100 Malus domestica HOM05D001312 ORTHO05D001832 4.1e-13 77.8 78 48.7
Nitab4.5_0002726g0060 Nicotiana tabacum HOM05D001312 ORTHO05D001832 6.9e-13 77.0 78 44.9
MD03G1169900 Malus domestica HOM05D001312 ORTHO05D001832 1.5e-12 75.9 78 47.4
CAN.G633.5 Capsicum annuum HOM05D001312 ORTHO05D001832 4.5e-12 74.3 78 48.7
Nitab4.5_0006878g0030 Nicotiana tabacum HOM05D001312 ORTHO05D001832 4.5e-12 74.3 78 43.6
FvH4_3g28290 Fragaria vesca HOM05D001312 ORTHO05D001832 7.7e-12 73.6 55 54.5
FAN11G1475 Fragaria x ananassa HOM05D001312 ORTHO05D001832 7.7e-12 73.6 55 54.5
FAN16G2548 Fragaria x ananassa HOM05D001312 ORTHO05D001832 7.7e-12 73.6 55 54.5
FAN21G0684 Fragaria x ananassa HOM05D001312 ORTHO05D008204 7.7e-12 73.6 55 54.5
Prupe.4G257200 Prunus persica HOM05D001312 ORTHO05D001832 7.7e-12 73.6 78 48.7
FAN25G1359 Fragaria x ananassa HOM05D001312 ORTHO05D001832 2.2e-11 72.0 55 52.7
Peaxi162Scf00004g03915 Petunia axillaris HOM05D001312 ORTHO05D001832 2.2e-11 72.0 78 46.2
Cfa009825 Carpinus fangiana HOM05D001312 ORTHO05D001832 2.9e-11 71.6 76 46.1
Haze_23185 Corylus avellana HOM05D001312 ORTHO05D001832 3.8e-11 71.2 76 46.1
Sopen11g024890 Solanum pennellii HOM05D001312 ORTHO05D001832 5.0e-11 70.9 78 43.6
Dinv36206 Davidia involucrata HOM05D001312 ORTHO05D001832 8.5e-11 70.1 75 46.7
RcHm_v2.0_Chr5g0051171 Rosa chinensis HOM05D001312 ORTHO05D001832 8.5e-11 70.1 71 45.1
Solyc11g065160.3 Solanum lycopersicum HOM05D001312 ORTHO05D001832 8.5e-11 70.1 78 43.6
Hma1.2p1_1920F.1_g307530 Hydrangea macrophylla HOM05D001312 ORTHO05D001832 1.4e-10 69.3 65 50.8
Hma1.2p1_2309F.1_g319530 Hydrangea macrophylla HOM05D001312 ORTHO05D001832 1.9e-10 68.9 65 49.2
Actinidia16356 Actinidia chinensis HOM05D001312 ORTHO05D001832 3.2e-10 68.2 71 47.9
Lj1A305G17 Lonicera japonica HOM05D001312 ORTHO05D001832 4.2e-10 67.8 74 45.9
QL01p018031 Quercus lobata HOM05D001312 ORTHO05D001832 5.5e-10 67.4 75 44.0
CiPaw.13G153400 Carya illinoinensis HOM05D001312 ORTHO05D001832 7.2e-10 67.0 73 46.6
Dinv22150 Davidia involucrata HOM05D001312 ORTHO05D001832 9.4e-10 66.6 71 49.3
CiPaw.14G115800 Carya illinoinensis HOM05D001312 ORTHO05D001832 1.2e-09 66.2 54 55.6
TAR623G0760 Trochodendron aralioides HOM05D001312 ORTHO05D001832 1.2e-09 66.2 76 44.7
Potri.009G049100 Populus trichocarpa HOM05D001312 ORTHO05D001832 2.1e-09 65.5 76 40.8
vmacro04116 Vaccinium macrocarpon HOM05D001312 ORTHO05D001832 2.1e-09 65.5 72 48.6
Atru.chr3.2620 Acer truncatum HOM05D001312 ORTHO05D001832 2.7e-09 65.1 76 44.7
Gohir.D07G126500 Gossypium hirsutum HOM05D001312 ORTHO05D001832 2.7e-09 65.1 73 42.5
Manes.06G161100 Manihot esculenta HOM05D001312 ORTHO05D001832 2.7e-09 65.1 77 42.9
Gorai.001G136400 Gossypium raimondii HOM05D001312 ORTHO05D001832 3.6e-09 64.7 73 42.5
arahy.Tifrunner.gnm1.ann1.9N20R9 Arachis hypogaea HOM05D001312 ORTHO05D001832 4.6e-09 64.3 73 45.2
arahy.Tifrunner.gnm1.ann1.BS1MHB Arachis hypogaea HOM05D001312 ORTHO05D001832 4.6e-09 64.3 73 45.2
Gohir.A07G122400 Gossypium hirsutum HOM05D001312 ORTHO05D001832 4.6e-09 64.3 73 42.5
Lalb_Chr03g0024551 Lupinus albus HOM05D001312 ORTHO05D001832 6.1e-09 63.9 73 42.5
GSVIVG01037231001 Vitis vinifera HOM05D001312 ORTHO05D001832 7.9e-09 63.5 75 42.7
Glyma.11G095800 Glycine max HOM05D001312 ORTHO05D001832 1.0e-08 63.2 73 43.8
TPR.G22567 Trifolium pratense HOM05D001312 ORTHO05D001832 1.8e-08 62.4 55 50.9
Ciclev10014020m.g Citrus clementina HOM05D001312 ORTHO05D001832 2.3e-08 62.0 75 42.7
Glyma.12G021900 Glycine max HOM05D001312 ORTHO05D001832 2.3e-08 62.0 73 42.5
Manes.14G005800 Manihot esculenta HOM05D001312 ORTHO05D001832 2.3e-08 62.0 67 44.8
Potri.001G254300 Populus trichocarpa HOM05D001312 ORTHO05D001832 2.3e-08 62.0 56 48.2
MELO3C015157.2 Cucumis melo HOM05D001312 ORTHO05D001832 3.0e-08 61.6 69 42.0
CsaV3_1G043090 Cucumis sativus L. HOM05D001312 ORTHO05D001832 3.0e-08 61.6 69 42.0
Sabra16G0155000 Salix brachista HOM05D001312 ORTHO05D001832 3.0e-08 61.6 77 40.3
Oeu001484.2 Olea europaea HOM05D001312 ORTHO05D001832 3.9e-08 61.2 77 37.7
Sabra09G0035800 Salix brachista HOM05D001312 ORTHO05D001832 3.9e-08 61.2 71 40.8
Sed0027883 Sechium edule HOM05D001312 ORTHO05D001832 3.9e-08 61.2 75 44.0
Thecc.09G241500 Theobroma cacao HOM05D001312 ORTHO05D001832 3.9e-08 61.2 56 44.6
Gohir.D07G126400 Gossypium hirsutum HOM05D001312 ORTHO05D001832 5.1e-08 60.8 73 39.7
Gorai.001G136300 Gossypium raimondii HOM05D001312 ORTHO05D001832 5.1e-08 60.8 73 39.7
Nn7g36465 Nelumbo nucifera HOM05D001312 ORTHO05D001832 6.7e-08 60.5 60 50.0
ClCG03G012960 Citrullus lanatus HOM05D001312 ORTHO05D001832 8.8e-08 60.1 69 42.0
Rhsim13G0217000 Rhododendron simsii HOM05D001312 ORTHO05D001832 1.1e-07 59.7 49 55.1
CSS0018354 Camellia sinensis var. sinensis HOM05D001312 ORTHO05D001832 1.5e-07 59.3 69 49.3
Lj3g0017534 Lotus japonicus HOM05D001312 ORTHO05D001832 1.5e-07 59.3 76 42.1
Psat0s2790g0120 Pisum sativum HOM05D003679 ORTHO05D004265 1.5e-07 59.3 55 47.3
VMungo1127G2034 Vigna mungo HOM05D001312 ORTHO05D001832 1.5e-07 59.3 73 42.5
Gohir.A07G122300 Gossypium hirsutum HOM05D001312 ORTHO05D001832 2.0e-07 58.9 73 38.4
Lalb_Chr19g0139691 Lupinus albus HOM05D001312 ORTHO05D001832 2.0e-07 58.9 73 42.5
Ca_11247_v3 Cicer arietinum L. HOM05D001312 ORTHO05D001832 3.3e-07 58.2 78 38.5
Phvul.011G023900 Phaseolus vulgaris HOM05D001312 ORTHO05D001832 3.3e-07 58.2 73 41.1
TWI23G1095 Tripterygium wilfordii HOM05D001312 ORTHO05D001832 3.3e-07 58.2 56 41.1
Sc16g0011180 Simmondsia chinensis HOM05D001312 ORTHO05D001832 4.4e-07 57.8 72 38.9
Medtr4g076180 Medicago truncatula HOM05D001312 ORTHO05D001832 7.4e-07 57.0 74 39.2
Hund21993 Selenicereus undatus HOM05D001312 ORTHO05D001832 9.7e-07 56.6 55 47.3
TWI39G0267 Tripterygium wilfordii HOM05D001312 ORTHO05D001832 1.3e-06 56.2 77 35.1
ECA233G2461 Erigeron canadensis HOM05D001312 ORTHO05D001832 1.7e-06 55.8 67 41.8
PSO339G2353 Papaver somniferum HOM05D001312 ORTHO05D001832 3.7e-06 54.7 45 48.9
PSO384G1094 Papaver somniferum HOM05D001312 ORTHO05D001832 3.7e-06 54.7 45 48.9
COL.COLO4_36486 Corchorus olitorius HOM05D001312 ORTHO05D008204 4.8e-06 54.3 70 41.4
HanXRQChr12g0378141 Helianthus annuus HOM05D001312 ORTHO05D001832 4.8e-06 54.3 68 41.2


User provided reference genes

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